NO28G00040.4, NO28G00040.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00040.4
Unique NameNO28G00040.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2142
Alignment locationchr28:12210..14979 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:12210..14979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00040.4 vs.
Match: EWM26035.1 (sulphydryl oxidase [Nannochloropsis gaditana])

HSP 1 Score: 493.8 bits (1270), Expect = 5.500e-136
Identity = 243/399 (60.90%), Postives = 292/399 (73.18%), Query Frame = 0 
Query:    5 ILSLLLLLLLLAHPAATYAACPAISLSIKAPSVVKTTRRINAKIKVTNKGSTQAVGLRLRLNLPVDVTLLKSTPVPSSTLNPWSLAFDISTLMPGKSAHVRVQGLVGECFEGSSALIEAAVAVPAENECNPTTTSISMDIAANKSPKRKPSTCPTNTSKLTVECGVPLPLSTTLAEASFPMGTCGTRTTLDPRVFGPDAWQMLHLFAQNYPTDPQPQVVEACELMINALPYMLPSEVSGYAFGQFIIANIDNDGSFSPACQASTEYNMPCQAPDVACLNQNNLVNFFLRAHHSVDVKTKPCKALWSPQMAAEAYTYQTDFCATCIVWGTTPLCKAVGETDCSAVNTTQPCGAVAPYLGPTPAPVTSSPTSSPQLMVECGVTLQPSISDWPVGKCGGFKT 404
            IL  + L+ +        A CP++ L++  PS+VK TR   AK KVTN     A GL L + LP++ TL K++P PS+TLNPWSL +   TL P KS HV V+GLVGECF+GS     A VAVPA+N C P T + ++ I      KR P  C TNTS+L V+CGVPLP   T +   FP+GTCG+    DPR FGPDAWQMLH+FAQNYP DPQPQV +ACE  INALPYMLP EV GY FG+FI+ANI++  +FSPACQAS + NMPCQ P  AC  Q++LVNFFLRAHHSVD +T+PCK+LW+P MAAEAY YQ DFCATCIVWGT PLCK+VGETDC AVNTT+PCG VAPYL PTPAP+T+SPT S +L+VECG+ L PSISDWP+G+CG   T
Sbjct:    6 ILGAVNLISVFTVHTVQAATCPSVRLNVNVPSIVKPTRAFRAKFKVTNTNRNVATGLALTVTLPIEFTLFKASPAPSNTLNPWSLVYGDITLGPLKSMHVVVRGLVGECFQGSMTF-NATVAVPADNTCAPVTAARTLSIKDRTGTKRPPY-CMTNTSQLNVDCGVPLP---TFSVEPFPVGTCGSIPASDPRAFGPDAWQMLHIFAQNYPEDPQPQVAQACESFINALPYMLPCEVCGYTFGEFILANIEHADTFSPACQASQDLNMPCQTPAQACATQSSLVNFFLRAHHSVDQRTQPCKSLWTPAMAAEAYAYQPDFCATCIVWGTVPLCKSVGETDCQAVNTTEPCGTVAPYLAPTPAPLTASPTPSSELIVECGIVLPPSISDWPMGQCGNRTT 399
The following BLAST results are available for this feature:
BLAST of NO28G00040.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26035.15.500e-13660.90sulphydryl oxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00040NO28G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00040.4NO28G00040.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00040.4.cds1NO28G00040.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00040.4.cds2NO28G00040.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00040.4.cds3NO28G00040.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00040.4 ID=NO28G00040.4|Name=NO28G00040.4|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp
ACCACAGGCATCTCCAAGCATGCTGCCTGGCATCCTCTCTCTCCTCCTCC
TCCTCCTCCTCCTCGCCCATCCTGCCGCCACTTACGCTGCCTGTCCCGCT
ATTAGCCTCAGTATCAAAGCCCCTTCCGTCGTTAAAACTACACGCAGAAT
CAATGCCAAAATCAAGGTGACCAACAAGGGCAGCACGCAGGCTGTTGGCC
TGCGCCTTCGTCTAAATCTACCCGTTGACGTCACGTTGCTAAAATCAACA
CCTGTCCCGTCCAGCACACTCAATCCCTGGTCGCTCGCCTTCGACATTTC
GACCCTGATGCCCGGCAAGAGTGCGCATGTGCGAGTACAAGGTCTGGTTG
GCGAATGCTTTGAGGGCAGTTCGGCATTAATCGAAGCCGCCGTAGCAGTG
CCGGCAGAGAATGAATGCAACCCTACGACGACCAGCATTTCGATGGACAT
TGCAGCCAACAAGAGTCCGAAAAGAAAGCCATCCACCTGCCCCACGAATA
CGTCTAAACTTACGGTGGAGTGTGGCGTGCCTTTGCCCTTGTCCACCACC
CTGGCCGAAGCCTCCTTCCCTATGGGCACCTGCGGGACACGGACAACCCT
CGACCCCCGCGTGTTCGGGCCCGACGCATGGCAAATGCTTCATCTCTTTG
CCCAGAACTACCCCACAGATCCGCAGCCCCAGGTGGTGGAGGCATGCGAG
CTAATGATCAATGCTTTACCCTACATGCTGCCGAGCGAGGTGTCGGGGTA
CGCGTTTGGGCAGTTCATAATCGCCAATATTGATAACGATGGCAGCTTTT
CGCCTGCGTGTCAAGCCAGTACCGAATACAACATGCCTTGCCAGGCCCCT
GATGTAGCCTGCCTCAATCAGAACAATCTCGTCAACTTTTTCCTTCGGGC
GCACCACAGCGTCGATGTCAAGACTAAGCCCTGCAAGGCCCTCTGGTCCC
CTCAGATGGCCGCTGAGGCCTATACCTACCAAACCGACTTTTGTGCTACA
TGCATCGTGTGGGGCACTACCCCACTTTGTAAAGCTGTGGGCGAGACGGA
CTGCAGCGCCGTTAACACCACGCAGCCCTGCGGTGCTGTCGCGCCCTACC
TGGGGCCGACTCCGGCACCTGTTACCTCTAGCCCCACCTCATCCCCTCAG
CTCATGGTGGAGTGTGGTGTCACCCTCCAGCCGTCCATCAGTGACTGGCC
CGTGGGAAAATGCGGTGGGTTCAAAACAGAAATGAGGATGGGGAATTGCA
TAATATCAATCTCTCTCTTTGTTATCACTTTACTTTTAACGGTTGACTTT
CGTTATGATCTCATCTTTCCCTTCCTGCTGATATAAAATAAAGGCAATCG
CACTACGGGTGACCCCCGGGTCTTCGGGCCCTACACTTGGCGGACAGTTC
ATCGCTTTGCCCAGCACTACCCAGTGAGTCCAACGCCAGACGTTCAAGAA
GCCTGCGTTAATTTCGTGAATGCCCTGCCATTCCTGCTGCCCTGTCCGCA
CTGCGGGTACGACCTCTCGGAGGTAAGTTGGCTTTATAGACAAAAAAGCG
ACAGATGGGTATCTTGTATGCATGACTTTTGTTCCATCTTCAACACTATC
TCTCACCTTCTGGTACACAGTTCATTGTTGCCAACATCGAAAATGCGGAC
ACCTTCAGTCCAGCCTGTCAGGGCAACACCACCTTCGCAATGCCCTGCGA
GACAATAGAAGACGCATGTAGCACGCGACCGAGCCTGATCTCCTTCTTTT
TGCGGGCACATCACAATGTTGACACGCACAACAAACCCTGCAAGCCACTG
TGGTCGCGTGAACAGGCATCTGACGCATTTGCCTTCCAGCCCAACTTCTG
CGCCACCGGGGTCGTCTACGGGGAGTACTCTCTATGTCGAAGTGAGAGCG
ATGTAGCCTGCGTTAACTTTAAAACGGAGCCGCCTTGTGGCGCAATTGTT
CCTCCACCAACAAACTAAGAAATAGGTGGAACACATTTACGTTTGAAACT
GCAATAAGATAATCAACAGTTTGCTAAACCCAGTTTAATCGAAGAGTCTT
CGTGCTTGCATAGATAAATAAACACCTGAAAGATAATGGGCGTTTAGTTT
TCTTATGGCAGAAAAATTAAGTAAAACGACGGAAAGTAGCGC
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protein sequence of NO28G00040.4

>NO28G00040.4-protein ID=NO28G00040.4-protein|Name=NO28G00040.4|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MLPGILSLLLLLLLLAHPAATYAACPAISLSIKAPSVVKTTRRINAKIKV
TNKGSTQAVGLRLRLNLPVDVTLLKSTPVPSSTLNPWSLAFDISTLMPGK
SAHVRVQGLVGECFEGSSALIEAAVAVPAENECNPTTTSISMDIAANKSP
KRKPSTCPTNTSKLTVECGVPLPLSTTLAEASFPMGTCGTRTTLDPRVFG
PDAWQMLHLFAQNYPTDPQPQVVEACELMINALPYMLPSEVSGYAFGQFI
IANIDNDGSFSPACQASTEYNMPCQAPDVACLNQNNLVNFFLRAHHSVDV
KTKPCKALWSPQMAAEAYTYQTDFCATCIVWGTTPLCKAVGETDCSAVNT
TQPCGAVAPYLGPTPAPVTSSPTSSPQLMVECGVTLQPSISDWPVGKCGG
FKTEMRMGNCIISISLFVITLLLTVDFRYDLIFPFLLI*
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mRNA from alignment at chr28:12210..14979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00040.4 ID=NO28G00040.4|Name=NO28G00040.4|organism=Nannochloropsis oceanica|type=mRNA|length=2770bp|location=Sequence derived from alignment at chr28:12210..14979- (Nannochloropsis oceanica)
ACCACAGGCATCTCCAAGCATGCTGCCTGGCATCCTCTCTCTCCTCCTCC
TCCTCCTCCTCCTCGCCCATCCTGCCGCCACTTACGCTGCCTGTCCCGCT
ATTAGCCTCAGTATCAAAGCCCCTTCCGTCGTTAAAACTACACGCAGAAT
CAATGCCAAAATCAAGGTGACCAACAAGGGCAGCACGCAGGCTGTTGGCC
TGCGCCTTCGTCTAAATCTACCCGTTGACGTCACGTTGCTAAAATCAACA
CCTGTCCCGTCCAGCACACTCAATCCCTGGTCGCTCGCCTTCGACATTTC
GACCCTGATGCCCGGCAAGAGTGCGCATGTGCGAGTACAAGGTCTGGTTG
GCGAATGCTTTGAGGGCAGTTCGGCATTAATCGAAGCCGCCGTAGCAGTG
CCGGCAGAGAATGAATGCAACCCTACGACGACCAGCATTTCGGTAAGGGG
GGTGATATGGATGGTTGAGGACCGGAAGGTTTAGATGGGCTCTCAATTGA
GGCATTTTACAGTCAAAGATTTAGTAGATTGAGGTTTCTCTTCTCCTTCT
CCTGCTGCTTCCCCTCTTTCTTCTTAAACTGCATTTTACAGTCAAAGATT
TAGTAGATTGAGGTTTCTCTTCTCCTTCTCCTGCTGCTTCCCCTCTTTCT
TCTTTATCCTCCTACTGCTCCTCACCCTCCTTTTCAACTCGTCCCCTTTT
CCTTCAGCCGTATCTTTACGAATTCCCTTTCTCCATCTTTCATATTTTTT
AATCCCTCTCAAGCTGTGCCTCTGTCTCTCTTTCTTATTTCCCATTTGTA
CTTCCTTCGATCATCATATCTATCAATCTCTGTACCCCTCCCACTAAATC
TGCGCCCTCTTGCGCTACCGCATTCCCTCCACCGCACTCAAAAGATGGAC
ATTGCAGCCAACAAGAGTCCGAAAAGAAAGCCATCCACCTGCCCCACGAA
TACGTCTAAACTTACGGTGGAGTGTGGCGTGCCTTTGCCCTTGTCCACCA
CCCTGGCCGAAGCCTCCTTCCCTATGGGCACCTGCGGGACACGGACAACC
CTCGACCCCCGCGTGTTCGGGCCCGACGCATGGCAAATGCTTCATCTCTT
TGCCCAGAACTACCCCACAGATCCGCAGCCCCAGGTGGTGGAGGCATGCG
AGCTAATGATCAATGCTTTACCCTACATGCTGCCGAGCGAGGTGTCGGGG
TACGCGTTTGGGCAGGTACGTGGATTTGAGGGAGAGACGACGATAAAGCC
AAAGAATGGATGGTCACTGGTGCAACAGCCGTATTATTCCTAGGTAAAAA
ATTCGGAAAACGCTGTAGGCGACGGCATGTGCTCTTCTATTTTCATAAAA
GACCCAACTGAAATTTCTCTACCTTCACCTCCATTTCATAGTTCATAATC
GCCAATATTGATAACGATGGCAGCTTTTCGCCTGCGTGTCAAGCCAGTAC
CGAATACAACATGCCTTGCCAGGCCCCTGATGTAGCCTGCCTCAATCAGA
ACAATCTCGTCAACTTTTTCCTTCGGGCGCACCACAGCGTCGATGTCAAG
ACTAAGCCCTGCAAGGCCCTCTGGTCCCCTCAGATGGCCGCTGAGGCCTA
TACCTACCAAACCGACTTTTGTGCTACATGCATCGTGTGGGGCACTACCC
CACTTTGTAAAGCTGTGGGCGAGACGGACTGCAGCGCCGTTAACACCACG
CAGCCCTGCGGTGCTGTCGCGCCCTACCTGGGGCCGACTCCGGCACCTGT
TACCTCTAGCCCCACCTCATCCCCTCAGCTCATGGTGGAGTGTGGTGTCA
CCCTCCAGCCGTCCATCAGTGACTGGCCCGTGGGAAAATGCGGTGGGTTC
AAAACAGAAATGAGGATGGGGAATTGCATAATATCAATCTCTCTCTTTGT
TATCACTTTACTTTTAACGGTTGACTTTCGTTATGATCTCATCTTTCCCT
TCCTGCTGATATAAAATAAAGGCAATCGCACTACGGGTGACCCCCGGGTC
TTCGGGCCCTACACTTGGCGGACAGTTCATCGCTTTGCCCAGCACTACCC
AGTGAGTCCAACGCCAGACGTTCAAGAAGCCTGCGTTAATTTCGTGAATG
CCCTGCCATTCCTGCTGCCCTGTCCGCACTGCGGGTACGACCTCTCGGAG
GTAAGTTGGCTTTATAGACAAAAAAGCGACAGATGGGTATCTTGTATGCA
TGACTTTTGTTCCATCTTCAACACTATCTCTCACCTTCTGGTACACAGTT
CATTGTTGCCAACATCGAAAATGCGGACACCTTCAGTCCAGCCTGTCAGG
GCAACACCACCTTCGCAATGCCCTGCGAGACAATAGAAGACGCATGTAGC
ACGCGACCGAGCCTGATCTCCTTCTTTTTGCGGGCACATCACAATGTTGA
CACGCACAACAAACCCTGCAAGCCACTGTGGTCGCGTGAACAGGCATCTG
ACGCATTTGCCTTCCAGCCCAACTTCTGCGCCACCGGGGTCGTCTACGGG
GAGTACTCTCTATGTCGAAGTGAGAGCGATGTAGCCTGCGTTAACTTTAA
AACGGAGCCGCCTTGTGGCGCAATTGTTCCTCCACCAACAAACTAAGAAA
TAGGTGGAACACATTTACGTTTGAAACTGCAATAAGATAATCAACAGTTT
GCTAAACCCAGTTTAATCGAAGAGTCTTCGTGCTTGCATAGATAAATAAA
CACCTGAAAGATAATGGGCGTTTAGTTTTCTTATGGCAGAAAAATTAAGT
AAAACGACGGAAAGTAGCGC
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Coding sequence (CDS) from alignment at chr28:12210..14979-

>NO28G00040.4 ID=NO28G00040.4|Name=NO28G00040.4|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr28:12210..14979- (Nannochloropsis oceanica)
ATGCTGCCTGGCATCCTCTCTCTCCTCCTCCTCCTCCTCCTCCTCGCCCA
TCCTGCCGCCACTTACGCTGCCTGTCCCGCTATTAGCCTCAGTATCAAAG
CCCCTTCCGTCGTTAAAACTACACGCAGAATCAATGCCAAAATCAAGGTG
ACCAACAAGGGCAGCACGCAGGCTGTTGGCCTGCGCCTTCGTCTAAATCT
ACCCGTTGACGTCACGTTGCTAAAATCAACACCTGTCCCGTCCAGCACAC
TCAATCCCTGGTCGCTCGCCTTCGACATTTCGACCCTGATGCCCGGCAAG
AGTGCGCATGTGCGAGTACAAGGTCTGGTTGGCGAATGCTTTGAGGGCAG
TTCGGCATTAATCGAAGCCGCCGTAGCAGTGCCGGCAGAGAATGAATGCA
ACCCTACGACGACCAGCATTTCGATGGACATTGCAGCCAACAAGAGTCCG
AAAAGAAAGCCATCCACCTGCCCCACGAATACGTCTAAACTTACGGTGGA
GTGTGGCGTGCCTTTGCCCTTGTCCACCACCCTGGCCGAAGCCTCCTTCC
CTATGGGCACCTGCGGGACACGGACAACCCTCGACCCCCGCGTGTTCGGG
CCCGACGCATGGCAAATGCTTCATCTCTTTGCCCAGAACTACCCCACAGA
TCCGCAGCCCCAGGTGGTGGAGGCATGCGAGCTAATGATCAATGCTTTAC
CCTACATGCTGCCGAGCGAGGTGTCGGGGTACGCGTTTGGGCAGTTCATA
ATCGCCAATATTGATAACGATGGCAGCTTTTCGCCTGCGTGTCAAGCCAG
TACCGAATACAACATGCCTTGCCAGGCCCCTGATGTAGCCTGCCTCAATC
AGAACAATCTCGTCAACTTTTTCCTTCGGGCGCACCACAGCGTCGATGTC
AAGACTAAGCCCTGCAAGGCCCTCTGGTCCCCTCAGATGGCCGCTGAGGC
CTATACCTACCAAACCGACTTTTGTGCTACATGCATCGTGTGGGGCACTA
CCCCACTTTGTAAAGCTGTGGGCGAGACGGACTGCAGCGCCGTTAACACC
ACGCAGCCCTGCGGTGCTGTCGCGCCCTACCTGGGGCCGACTCCGGCACC
TGTTACCTCTAGCCCCACCTCATCCCCTCAGCTCATGGTGGAGTGTGGTG
TCACCCTCCAGCCGTCCATCAGTGACTGGCCCGTGGGAAAATGCGGTGGG
TTCAAAACAGAAATGAGGATGGGGAATTGCATAATATCAATCTCTCTCTT
TGTTATCACTTTACTTTTAACGGTTGACTTTCGTTATGATCTCATCTTTC
CCTTCCTGCTGATATAA
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Synonyms
Publications