NO28G00040, NO28G00040 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G00040 vs. NCBI_GenBank
Match: EWM26035.1 (sulphydryl oxidase [Nannochloropsis gaditana]) HSP 1 Score: 773.1 bits (1995), Expect = 6.100e-220 Identity = 360/549 (65.57%), Postives = 423/549 (77.05%), Query Frame = 0 Query: 23 AACPAISLSIKAPSVVKTTRRINAKIKVTNKGSTQAVGLRLRLNLPVDVTLLKSTPVPSSTLNPWSLAFDISTLMPGKSAHVRVQGLVGECFEGSSALIEAAVAVPAENECNPTTTSISMDIAANKSPKRKPSTCPTNTSKLTVECGVPLPLSTTLAEASFPMGTCGTRTTLDPRVFGPDAWQMLHLFAQNYPTDPQPQVVEACELMINALPYMLPSEVSGYAFGQFIIANIDNDGSFSPACQASTEYNMPCQAPDVACLNQNNLVNFFLRAHHSVDVKTKPCKALWSPQMAAEAYTYQTDFCATCIVWGTTPLCKAVGETDCSAVNTTQPCGAVAPYLGPTPAPVTSSPTSSPQLMVECGVTLQPSISDWPVGKCGNRTTGDPRVFGPYTWRTVHRFAQHYPVSPTPDVQEACVNFVNALPFLLPCPHCGYDLSEFIVANIENADTFSPACQGNTTFAMPCETIEDACSTRPSLISFFLRAHHNVDTHNKPCKPLWSREQASDAFAFQPNFCATGVVYGEYSLCRSESDVACVNFKTEPPCGAIVPPP 572 A CP++ L++ PS+VK TR AK KVTN A GL L + LP++ TL K++P PS+TLNPWSL + TL P KS HV V+GLVGECF+GS A VAVPA+N C P T + ++ I KR P C TNTS+L V+CGVPLP T + FP+GTCG+ DPR FGPDAWQMLH+FAQNYP DPQPQV +ACE INALPYMLP EV GY FG+FI+ANI++ +FSPACQAS + NMPCQ P AC Q++LVNFFLRAHHSVD +T+PCK+LW+P MAAEAY YQ DFCATCIVWGT PLCK+VGETDC AVNTT+PCG VAPYL PTPAP+T+SPT S +L+VECG+ L PSISDWP+G+CGNRTTGDPRVFGPYTWRTVHRFAQ YP+ PT +VQEACVNF+NALPFLLPCPHCG+D FIVAN+ENA TF+ AC N T+ MPCE++E AC+TRP+L+SFFLRAHHNVD +NKPCKPLWSRE+A DAFA NFCAT V Y LCR + + AC T PPCG +VP P Sbjct: 24 ATCPSVRLNVNVPSIVKPTRAFRAKFKVTNTNRNVATGLALTVTLPIEFTLFKASPAPSNTLNPWSLVYGDITLGPLKSMHVVVRGLVGECFQGSMT-FNATVAVPADNTCAPVTAARTLSIKDRTGTKR-PPYCMTNTSQLNVDCGVPLP---TFSVEPFPVGTCGSIPASDPRAFGPDAWQMLHIFAQNYPEDPQPQVAQACESFINALPYMLPCEVCGYTFGEFILANIEHADTFSPACQASQDLNMPCQTPAQACATQSSLVNFFLRAHHSVDQRTQPCKSLWTPAMAAEAYAYQPDFCATCIVWGTVPLCKSVGETDCQAVNTTEPCGTVAPYLAPTPAPLTASPTPSSELIVECGIVLPPSISDWPMGQCGNRTTGDPRVFGPYTWRTVHRFAQFYPIDPTTEVQEACVNFINALPFLLPCPHCGHDFVNFIVANLENAGTFNAACAANVTYGMPCESLEQACATRPNLVSFFLRAHHNVDRNNKPCKPLWSREEAVDAFAVMTNFCATDGVSAGYELCRGKDESACEELATTPPCGYLVPFP 567
BLAST of NO28G00040 vs. NCBI_GenBank
Match: GAX84633.1 (hypothetical protein CEUSTIGMA_g12054.t1 [Chlamydomonas eustigma]) HSP 1 Score: 182.2 bits (461), Expect = 4.600e-42 Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 0 Query: 380 VECGVTLQPSISDWP-VGKCGNRTTGDPRVFGPYTWRTVHRFAQHYPVSPTPDVQEACVNFVNALPFLLPCPHCGYDLSEFIVANIENADTFSPACQGNTTFAMPCETIEDACSTRPSLISFFLRAHHNVDTHNKPCKPLWSREQASDAFAFQPNFCATGVVY---GEYSLCRSESDVACVNFKTEPP 564 VECGVT+ P +G C TTGDPRVFGP W+T HRFA YP SP AC+NFV+ALP++LPC CG DL EFI N TF+ C + + MPC+++E AC+T+P L+++FLRAH+NV H PC+ LW+ EQA+ + + CA VV+ G +CR++ CV+ + P Sbjct: 30 VECGVTITERADASPKIGSCQMNTTGDPRVFGPDAWKTFHRFANSYPESPNKKTITACINFVHALPYMLPCSMCGLDLKEFIENNEVLEGTFNDKCAASEEYGMPCQSVEAACTTQPYLVNWFLRAHYNVGRHTNPCRTLWTPEQAAKVYGSE-LLCAKNVVWGGCGRTGVCRAQHQPNCVDEAKDCP 216
BLAST of NO28G00040 vs. NCBI_GenBank
Match: XP_005786913.1 (hypothetical protein EMIHUDRAFT_363535 [Emiliania huxleyi CCMP1516] >EOD34484.1 hypothetical protein EMIHUDRAFT_363535 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 156.8 bits (395), Expect = 2.100e-34 Identity = 68/161 (42.24%), Postives = 102/161 (63.35%), Query Frame = 0 Query: 391 SDWPVGKCGNRTTGDPRVFGPYTWRTVHRFAQHYPVSPTPDVQEACVNFVNALPFLLPCPHCGYDLSEFIVANIENADTFSPACQGNTTFAMP---CETIEDACSTRPSLISFFLRAHHNVDTHNKPCKPLWSREQASDAFA-FQPNFCATGVVYGEYSLC 548 S +P G CG+R++ DPRVFGP+ W+T H A +Y PT AC F+ ALP+++PC HC +DL +FI NIEN+ ++ C G T+ C E+AC ++ SL+SFF+RAH+NV++H PC+P ++ +Q D + P+FCA +V+G +C Sbjct: 89 SPFPPGTCGSRSSSDPRVFGPHFWKTFHTMAVNYHSPPTKAALGACSAFIKALPYMIPCTHCAWDLGQFIQTNIENSGKYNETCMGATSEHFDESLCFAPEEACKSQRSLVSFFVRAHNNVNSHTNPCRPRFTIKQGYDMYKNSSPDFCARDIVWGSKQIC 249
BLAST of NO28G00040 vs. NCBI_GenBank
Match: XP_005774216.1 (hypothetical protein EMIHUDRAFT_435722 [Emiliania huxleyi CCMP1516] >EOD21787.1 hypothetical protein EMIHUDRAFT_435722 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 155.2 bits (391), Expect = 6.000e-34 Identity = 68/161 (42.24%), Postives = 101/161 (62.73%), Query Frame = 0 Query: 391 SDWPVGKCGNRTTGDPRVFGPYTWRTVHRFAQHYPVSPTPDVQEACVNFVNALPFLLPCPHCGYDLSEFIVANIENADTFSPACQGNTTFAMP---CETIEDACSTRPSLISFFLRAHHNVDTHNKPCKPLWSREQASDAFA-FQPNFCATGVVYGEYSLC 548 S +P G CG R++ DPRVFGP+ W+T H A +Y PT AC F+ ALP+++PC HC +DL +FI NIEN+ ++ C G T+ C E+AC ++ SL+SFF+RAH+NV++H PC+P ++ +Q D + P+FCA +V+G +C Sbjct: 89 SPFPPGTCGLRSSSDPRVFGPHFWKTFHTMAVNYHSPPTKAALGACSAFIKALPYMIPCTHCAWDLGQFIQTNIENSGKYNETCMGATSEHFDESLCFAPEEACKSQRSLVSFFVRAHNNVNSHTNPCRPRFTIKQGYDMYKNSSPDFCARDIVWGSKQIC 249
BLAST of NO28G00040 vs. NCBI_GenBank
Match: XP_005764872.1 (hypothetical protein EMIHUDRAFT_213712 [Emiliania huxleyi CCMP1516] >EOD12443.1 hypothetical protein EMIHUDRAFT_213712 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 145.6 bits (366), Expect = 4.800e-31 Identity = 76/184 (41.30%), Postives = 96/184 (52.17%), Query Frame = 0 Query: 396 GKCGNRT----TGDPRVFGPYTWRTVHRFAQHYPVSPTPDVQEACVNFVNALPFLLPCPHCGYDLSEFIVANIENADTFSPACQG----NTTFAMPCETIEDACSTRPSLISFFLRAHHNVDTHNKPC-KPLWSREQASDAFAFQPNFCATGVVYGEYSLCRSESDVACVNFKTEPPCGAIVPP 571 G C + T DPRVFGP WR H A ++P PT +ACVNFV ALP+L+PC HCG+DL EFI NI+N P C G F PCE+ E AC++ +L SFF RAH+NV++H PC KP +++ A C V+G LC T P C A +PP Sbjct: 54 GSCATKDNHIGTTDPRVFGPSLWRAFHLIAANFPSPPTDAAHQACVNFVMALPYLVPCRHCGWDLGEFIKRNIQNDTISDPGCFGFSEETQDFTEPCESPERACTSTYNLTSFFARAHNNVNSHTNPCRKPYTTKDALQQYLAAPEGTCLHNTVWGSKQLC------------TGPYCNANLPP 225 The following BLAST results are available for this feature:
BLAST of NO28G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G00040 ID=NO28G00040|Name=NO28G00040|organism=Nannochloropsis oceanica|type=gene|length=2770bpback to top protein sequence of NO28G00040.4 >NO28G00040.4-protein ID=NO28G00040.4-protein|Name=NO28G00040.4|organism=Nannochloropsis oceanica|type=polypeptide|length=439bpback to top protein sequence of NO28G00040.3 >NO28G00040.3-protein ID=NO28G00040.3-protein|Name=NO28G00040.3|organism=Nannochloropsis oceanica|type=polypeptide|length=433bpback to top protein sequence of NO28G00040.2 >NO28G00040.2-protein ID=NO28G00040.2-protein|Name=NO28G00040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=439bpback to top protein sequence of NO28G00040.1 >NO28G00040.1-protein ID=NO28G00040.1-protein|Name=NO28G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bpback to top Synonyms
Publications
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