NO27G01500.1, NO27G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01500.1
Unique NameNO27G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1607
Alignment locationchr27:498085..501276 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:498085..501276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01500.1 vs.
Match: EWM20567.1 (hypothetical protein Naga_101222g2 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 2.100e-29
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 0 
Query:    1 MGFRERLMEKIWSRERDLRTKAWVFGCVALVSCGVSSFYSYNFLKRFFLTALLRNVPKKRLADVQEGEYVKVVGEITTVHPHEAGAG---------AAGEAATAKTVPVSATTQEEPG 110
            MG ++RL+EKIW +ERDLR KAWVFG VAL+SCGVSSFYSY+F+KRF L+ LLRNVP +RLAD++EGEYVKV G I+ V P   G G           GE ATA+TVPV    +++ G
Sbjct:    1 MGLKDRLLEKIWGQERDLRVKAWVFGGVALISCGVSSFYSYSFIKRFMLSHLLRNVPNRRLADMKEGEYVKVTGRISVVRPGGGGGGGGGGGGGGRGGGEGATAQTVPVEVQVRKKGG 118
The following BLAST results are available for this feature:
BLAST of NO27G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20567.12.100e-2959.32hypothetical protein Naga_101222g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01500NO27G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01500.1NO27G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01500.1.cds1NO27G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds2NO27G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds3NO27G01500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds4NO27G01500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds5NO27G01500.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds6NO27G01500.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds7NO27G01500.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds8NO27G01500.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01500.1.cds9NO27G01500.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01500.1 ID=NO27G01500.1|Name=NO27G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1607bp
AGGTCTTGCTTGGACTTTCGATAAGCACCATGGGATTCAGAGAACGCCTC
ATGGAGAAGATTTGGAGCCGGGAGAGGGATCTGCGCACCAAAGCCTGGGT
TTTTGGTTGTGTAGCACTTGTCTCCTGTGGAGTCTCGTCGTTTTATTCCT
ACAACTTCCTAAAGCGTTTTTTCCTCACGGCTCTCCTCCGCAACGTCCCC
AAGAAACGATTAGCCGATGTACAAGAAGGAGAGTACGTCAAGGTGGTGGG
TGAAATCACTACCGTCCATCCCCATGAGGCAGGAGCAGGTGCCGCAGGAG
AAGCAGCGACGGCAAAAACAGTGCCGGTGTCTGCGACGACACAGGAAGAG
CCTGGTGCACTCAAGACCCCTATAGCAGGCGTGGCATGTGTGTTGCTGCA
CGCCCTGGAGTATAGGGTAGTGGAGGAGATGGACCGAGCCAGCGGGCGAT
TCCACAGGGGGAAGACCAAAGGGAAGAGCAACGACCGAGACACGACCGGA
GGCGGGCTAGAGTATACTAAGGATATCTGGAAGGAGAAGCACGAGGTGAT
CAAGGAGGTCAAGCGCTCGGTGCCCTGCTATCTTGTCGAGGCCTCGACGG
GTGCGGGGATGGCCCTGGACATAGGCGGAAACCCTCTCTACCTCGACCTC
CAAACCGTGCACGAGGAATTCAAGCCAATCGAGCGCATCGTCGAAGCGCG
AAGCAGTCGTCGCACCCTCGGCTACAAAGAGGTCGAAAAAGTCCTCCCTC
TCCACGCCCAACTCCTGGTCTTTGCCGAGGTTGGTCGTAAGGGCAACGAG
GGCGACAAGGGCGGCGAGCTGGTGCTGCAGCGACCCACTACGAAGCACAT
GTTTGACAGAAAAACCGCCCGCACGAAGCCGTATGTTATCACTCTCCTCA
GTGAAACCGAGCTCCTAGCCAAGGTGGAAAGACAAGCCCGTGTTGAGCTT
TATATAGCCGGGGCAACAGCCCTCCTCTCCCTCCTCTCCGGCCTCCTCTC
TCGACAAAGTATCGCTTTGTTGAGCGAGCTGGTGGGAGGCGGAAGGAGCG
AGGGAGGGATGGGGGGAGCGAGGGAGTACAATTAAGGGTATGGCGCTTCT
TCCTGCCCTCCCTCCCCCCTCCTTTCTTCCCTTCCTCATCCTACCCTACT
GTGTTTGAGACTCACCGCATGTGATCCAGCTGGTGGGAGACTGAGGAAGG
AAGGAGGGAGGGGAGGGAAGGAGGAAGGGATGAAGAGAACGAGCACAGCT
GTGTTAACGTTGGGCAGATGATGGATGAGGAAGGAGATGGGGGGAGGAAG
CAGGGGAGACGGGAGAAAACAGAGATGAGTGTTGGCACCCGCTGTAAGGA
AGGGAAAGAGTTGTGGAAGAGGCTGAGGCTGGGAAGAGACGAAGGAAGGA
CAGAGGGATGGAGGGAAGGAGGGAAGGAGGGAGCGGTGTGTGCAGGCGGA
GGGAGTAAACAAAACAAAGCGAAGAGGGAGGAGGGTGTTGAAACATTTTG
AAAGAAGAACACGCAAGACAGAGGAACGACGGTGAGGAGTATAGAAGAAA
AAAAAAGGGAAAAAAAAGGAGAAATAAGGAGAAGAAGACGATGTGTATCG
TCCTTTT
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protein sequence of NO27G01500.1

>NO27G01500.1-protein ID=NO27G01500.1-protein|Name=NO27G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MGFRERLMEKIWSRERDLRTKAWVFGCVALVSCGVSSFYSYNFLKRFFLT
ALLRNVPKKRLADVQEGEYVKVVGEITTVHPHEAGAGAAGEAATAKTVPV
SATTQEEPGALKTPIAGVACVLLHALEYRVVEEMDRASGRFHRGKTKGKS
NDRDTTGGGLEYTKDIWKEKHEVIKEVKRSVPCYLVEASTGAGMALDIGG
NPLYLDLQTVHEEFKPIERIVEARSSRRTLGYKEVEKVLPLHAQLLVFAE
VGRKGNEGDKGGELVLQRPTTKHMFDRKTARTKPYVITLLSETELLAKVE
RQARVELYIAGATALLSLLSGLLSRQSIALLSELVGGGRSEGGMGGAREY
N*
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mRNA from alignment at chr27:498085..501276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01500.1 ID=NO27G01500.1|Name=NO27G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3192bp|location=Sequence derived from alignment at chr27:498085..501276- (Nannochloropsis oceanica)
AGGTCTTGCTTGGACTTTCGATAAGCACCATGGGATTCAGAGAACGCCTC
ATGGAGAAGATTTGGAGCCGGGAGAGGGATCTGCGCACCAAAGCCTGGGT
TTTTGGTTGTGTAGCACTTGTCTCCTGTGGAGTCTCGTCGTTTTATTCCT
ACAAGTAAGTCCTTGGGGAGGTGGGGAGGAGGGGGAAAGGAAGGGATTGG
AGAGGAAAATATGTCGATAAGGCAAACAGAGGTTCTTCGTTTGGCACACG
CGTTGCTAGATGGAAAGGAAAGACCTCCGTGGCGGATTATGAGGAAAGGT
GGTAGCGTCCTTCACATTCCTCCCTCGCCCACGCCCTCCCTTTCTCCCTC
GCTCCCTCCCTCCAGCTTCCTAAAGCGTTTTTTCCTCACGGCTCTCCTCC
GCAACGTCCCCAAGAAACGATTAGCCGATGTACAAGAAGGAGAGTACGTC
AAGGTGGTGGGTGAAATCACTACCGTCCATCCCCATGAGGCAGGAGCAGG
TGCCGCAGGAGAAGCAGCGACGGCAAAAACAGTGCCGGTGTCTGCGACGA
CACAGGTAGGAAGGGAGGGAAAGAGGGAGACTTTCCATCCTTTTCCTCAT
CTTTCTGATCCGCAAGATAGAGGGAGGGAGGGAGAGGGAGGGAGAGAGGG
AGGGAGAGAGGGGAGGGATGGAGGGATGAAGGCTTCTTAATTCGAGGCTT
ACGCCAATATCCCAACATACATGTAGGAAGAGCCTGGTGCACTCAAGACC
CCTATAGCAGGTAGGCTACAAATGACAGGATCAAGGAAGGATGGAAAGAA
GGAAGAAGGGAAAAAGGGAGGGTGCGGCTTGCATGGACGGAAAGTGTATT
CATTCATTAGCTTTAATTTATTTCTTCACGTAAACACATGTTGCTTTGTT
TACGTGGTCTTGTTCATCGTTTATATTTATTTATTAATTATAATATATAT
ATTAATATATATACTAATTTATATATTTATTCTCTCAGTTATGGTCAAAT
ATCTTTGTATATATATTAATTTATTTAGATACATATTTTTACATGATATT
TATTTATTTTATTTCATTCACTCCCTATCGAATAGGCGTGGCATGTGTGT
TGCTGCACGCCCTGGAGTATAGGGTAGTGGAGGAGATGGACCGAGCCAGC
GGGCGATTCCACAGGGGGAAGACCAAAGGGAAGAGCAACGACCGAGACAC
GACCGGAGGCGGGCTAGAGTATACTAAGGTAAGCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTCTCCCTCTCTCCCGTCCTCCCCCTTGTGCGCTC
CGTCGGTTCTCCCTCCGTCTCCCATTACACTCATCCTCGGTCCCTCCTCT
TTCTCTTTTTTGAAAGCGTCACCCACACTTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCAAGGATATCTGGAAGGAGAAGCACGA
GGTGATCAAGGAGGTCAAGCGCTCGGTGCCCTGCTATCTTGTCGAGGCCT
CGACGGGTGCGGGGATGGCCCTGGACATAGGCGGAAACCCTCTCTACCTC
GACCTCCAAACCGTGCACGAGGAATTCAAGCCAAGTACGGCAAGAAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGTGGTTGTCTCTTGTCACCTTGCAGACACGCCACATACGCCTAG
CAACACATTTCTCCCTCCCCCCTCCCTCTCTCCCTCTCTCCCTCCCTCCC
TCCCTCCCTCCCTCCAGTCGAGCGCATCGTCGAAGCGCGAAGCAGTCGTC
GCACCCTCGGCTACAAAGAGGTCGAAAAAGTCCTCCCTCTCCACGCCCAA
CTCCTGGTCTTTGCCGAGGTACGCCCCATCCATCCCTCCCTCCCTCCCTC
CCTCCTTCCCCTCCTTCAGCGACGTTCGTCGTAAGGACAACGAGGGCGAC
AAGGGCGGCGAGCTGGTTTTCCACCTACCCCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCTTCTCTTAGGTTGGTCGT
AAGGGCAACGAGGGCGACAAGGGCGGCGAGCTGGTGCTGCAGCGACCCAC
TACGAAGCACATGTTTGACAGAAAAACGTGAGGGAGGAGGCGGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGACAAGGACTGTGAGCCTACGGATAAGA
AAATGACCACTCTCCCTGCCACTCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCACTTTCTCTCTTTCTCCC
TCCCTGCCACCAGCGCCCGCACGAAGCCGTATGTTATCACTCTCCTCAGT
GAAACCGAGCTCCTAGCCAAGGTATGCATCTTCCCTCTCTCTCTACCTCC
CTCCCTCCCTTCCTCCCTTCCTCCTCTCCCTCCGGCCAGCATCGTAGACA
ACCAAATGTGACGGCGCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCCCCC
GCCCTCAGGTGGAAAGACAAGCCCGTGTTGAGCTTTATATAGCCGGGGCA
ACAGCCCTCCTCTCCCTCCTCTCCGGCCTCCTCTCTCGACAAAGTATCGC
TTTGTTGAGCGAGCTGGTGGGAGGCGGAAGGAGCGAGGGAGGGATGGGGG
GAGCGAGGGAGTACAATTAAGGGTATGGCGCTTCTTCCTGCCCTCCCTCC
CCCCTCCTTTCTTCCCTTCCTCATCCTACCCTACTGTGTTTGAGACTCAC
CGCATGTGATCCAGCTGGTGGGAGACTGAGGAAGGAAGGAGGGAGGGGAG
GGAAGGAGGAAGGGATGAAGAGAACGAGCACAGCTGTGTTAACGTTGGGC
AGATGATGGATGAGGAAGGAGATGGGGGGAGGAAGCAGGGGAGACGGGAG
AAAACAGAGATGAGTGTTGGCACCCGCTGTAAGGAAGGGAAAGAGTTGTG
GAAGAGGCTGAGGCTGGGAAGAGACGAAGGAAGGACAGAGGGATGGAGGG
AAGGAGGGAAGGAGGGAGCGGTGTGTGCAGGCGGAGGGAGTAAACAAAAC
AAAGCGAAGAGGGAGGAGGGTGTTGAAACATTTTGAAAGAAGAACACGCA
AGACAGAGGAACGACGGTGAGGAGTATAGAAGAAAAAAAAAGGGAAAAAA
AAGGAGAAATAAGGAGAAGAAGACGATGTGTATCGTCCTTTT
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Coding sequence (CDS) from alignment at chr27:498085..501276-

>NO27G01500.1 ID=NO27G01500.1|Name=NO27G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr27:498085..501276- (Nannochloropsis oceanica)
ATGGGATTCAGAGAACGCCTCATGGAGAAGATTTGGAGCCGGGAGAGGGA
TCTGCGCACCAAAGCCTGGGTTTTTGGTTGTGTAGCACTTGTCTCCTGTG
GAGTCTCGTCGTTTTATTCCTACAACTTCCTAAAGCGTTTTTTCCTCACG
GCTCTCCTCCGCAACGTCCCCAAGAAACGATTAGCCGATGTACAAGAAGG
AGAGTACGTCAAGGTGGTGGGTGAAATCACTACCGTCCATCCCCATGAGG
CAGGAGCAGGTGCCGCAGGAGAAGCAGCGACGGCAAAAACAGTGCCGGTG
TCTGCGACGACACAGGAAGAGCCTGGTGCACTCAAGACCCCTATAGCAGG
CGTGGCATGTGTGTTGCTGCACGCCCTGGAGTATAGGGTAGTGGAGGAGA
TGGACCGAGCCAGCGGGCGATTCCACAGGGGGAAGACCAAAGGGAAGAGC
AACGACCGAGACACGACCGGAGGCGGGCTAGAGTATACTAAGGATATCTG
GAAGGAGAAGCACGAGGTGATCAAGGAGGTCAAGCGCTCGGTGCCCTGCT
ATCTTGTCGAGGCCTCGACGGGTGCGGGGATGGCCCTGGACATAGGCGGA
AACCCTCTCTACCTCGACCTCCAAACCGTGCACGAGGAATTCAAGCCAAT
CGAGCGCATCGTCGAAGCGCGAAGCAGTCGTCGCACCCTCGGCTACAAAG
AGGTCGAAAAAGTCCTCCCTCTCCACGCCCAACTCCTGGTCTTTGCCGAG
GTTGGTCGTAAGGGCAACGAGGGCGACAAGGGCGGCGAGCTGGTGCTGCA
GCGACCCACTACGAAGCACATGTTTGACAGAAAAACCGCCCGCACGAAGC
CGTATGTTATCACTCTCCTCAGTGAAACCGAGCTCCTAGCCAAGGTGGAA
AGACAAGCCCGTGTTGAGCTTTATATAGCCGGGGCAACAGCCCTCCTCTC
CCTCCTCTCCGGCCTCCTCTCTCGACAAAGTATCGCTTTGTTGAGCGAGC
TGGTGGGAGGCGGAAGGAGCGAGGGAGGGATGGGGGGAGCGAGGGAGTAC
AATTAA
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Synonyms
Publications