NO27G01500, NO27G01500 (gene) Nannochloropsis oceanica

Overview
NameNO27G01500
Unique NameNO27G01500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3192
Alignment locationchr27:498085..501276 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:498085..501276 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006996organelle organization
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR022170GIDE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO27G01500 vs. NCBI_GenBank
Match: EWM20567.1 (hypothetical protein Naga_101222g2 [Nannochloropsis gaditana])

HSP 1 Score: 127.9 bits (320), Expect = 6.300e-26
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 0 
Query:    1 MGFRERLMEKIWSRERDLRTKAWVFGCVALVSCGVSSFYSYNFLKRFFLTALLRNVPKKRLADVQEGEYVKVVGEITTVHP 82
            MG ++RL+EKIW +ERDLR KAWVFG VAL+SCGVSSFYSY+F+KRF L+ LLRNVP +RLAD++EGEYVKV G I+ V P
Sbjct:    1 MGLKDRLLEKIWGQERDLRVKAWVFGGVALISCGVSSFYSYSFIKRFMLSHLLRNVPNRRLADMKEGEYVKVTGRISVVRP 81
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BLAST of NO27G01500 vs. NCBI_GenBank
Match: XP_005855794.1 (hypothetical protein NGA_0631200, partial [Nannochloropsis gaditana CCMP526] >EKU20570.1 hypothetical protein NGA_0631200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.7 bits (304), Expect = 4.500e-24
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0 
Query:    1 MGFRERLMEKIWSRERDLRTKAWVFGCVALVSCGVSSFYSYNFLKRFFLTALLRNVPKKRLADVQEGEYVKVVG 75
            MG ++RL+EKIW +ERDLR KAWVFG VAL+SCGVSSFYSY+F+KRF L+ LLRNVP +RLAD++EGEYVKV G
Sbjct:    1 MGLKDRLLEKIWGQERDLRVKAWVFGGVALISCGVSSFYSYSFIKRFMLSHLLRNVPNRRLADMKEGEYVKVTG 74
The following BLAST results are available for this feature:
BLAST of NO27G01500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20567.16.300e-2671.60hypothetical protein Naga_101222g2 [Nannochloropsi... [more]
XP_005855794.14.500e-2474.32hypothetical protein NGA_0631200, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01500.1NO27G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608378gene_9927Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101222g2gene9840Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01500.1NO27G01500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01500 ID=NO27G01500|Name=NO27G01500|organism=Nannochloropsis oceanica|type=gene|length=3192bp
AGGTCTTGCTTGGACTTTCGATAAGCACCATGGGATTCAGAGAACGCCTC
ATGGAGAAGATTTGGAGCCGGGAGAGGGATCTGCGCACCAAAGCCTGGGT
TTTTGGTTGTGTAGCACTTGTCTCCTGTGGAGTCTCGTCGTTTTATTCCT
ACAAgtaagtccttggggaggtggggaggagggggaaaggaagggattgg
agaggaaaatatgtcgataaggcaaacagaggttcttcgtttggcacacg
cgttgctagatggaaaggaaagacctccgtggcggattatgaggaaaggt
ggtagcgtccttcacattcctccctcgcccacgccctccctttctccctc
gctccctccctccagCTTCCTAAAGCGTTTTTTCCTCACGGCTCTCCTCC
GCAACGTCCCCAAGAAACGATTAGCCGATGTACAAGAAGGAGAGTACGTC
AAGGTGGTGGGTGAAATCACTACCGTCCATCCCCATGAGGCAGGAGCAGG
TGCCGCAGGAGAAGCAGCGACGGCAAAAACAGTGCCGGTGTCTGCGACGA
CACAGgtaggaagggagggaaagagggagactttccatccttttcctcat
ctttctgatccgcaagatagagggagggagggagagggagggagagaggg
agggagagaggggagggatggagggatgaaggcttcttaattcgaggctt
acgccaatatcccaacatacatgtagGAAGAGCCTGGTGCACTCAAGACC
CCTATAGCAGgtaggctacaaatgacaggatcaaggaaggatggaaagaa
ggaagaagggaaaaagggagggtgcggcttgcatggacggaaagtgtatt
cattcattagctttaatttatttcttcacgtaaacacatgttgctttgtt
tacgtggtcttgttcatcgtttatatttatttattaattataatatatat
attaatatatatactaatttatatatttattctctcagttatggtcaaat
atctttgtatatatattaatttatttagatacatatttttacatgatatt
tatttattttatttcattcactccctatcgaatagGCGTGGCATGTGTGT
TGCTGCACGCCCTGGAGTATAGGGTAGTGGAGGAGATGGACCGAGCCAGC
GGGCGATTCCACAGGGGGAAGACCAAAGGGAAGAGCAACGACCGAGACAC
GACCGGAGGCGGGCTAGAGTATACTAAGgtaagccctccctccctccctc
cctccctccctccctctctccctctctcccgtcctcccccttgtgcgctc
cgtcggttctccctccgtctcccattacactcatcctcggtccctcctct
ttctcttttttgaaagcgtcacccacactttccctccctccctccctccc
tccctccctccctccctccctcccaagGATATCTGGAAGGAGAAGCACGA
GGTGATCAAGGAGGTCAAGCGCTCGGTGCCCTGCTATCTTGTCGAGGCCT
CGACGGGTGCGGGGATGGCCCTGGACATAGGCGGAAACCCTCTCTACCTC
GACCTCCAAACCGTGCACGAGGAATTCAAGCCAAgtacggcaagaagagg
gagggagggagggagggagggagggagggagggagggagggagggaggga
gggagggtggttgtctcttgtcaccttgcagacacgccacatacgcctag
caacacatttctccctcccccctccctctctccctctctccctccctccc
tccctccctccctccagTCGAGCGCATCGTCGAAGCGCGAAGCAGTCGTC
GCACCCTCGGCTACAAAGAGGTCGAAAAAGTCCTCCCTCTCCACGCCCAA
CTCCTGGTCTTTGCCGAGgtacgccccatccatccctccctccctccctc
cctccttcccctccttcagcgacgttcgtcgtaaggacaacgagggcgac
aagggcggcgagctggttttccacctaccccccctccctccctccctccc
tccctccctccctccctccctccctccccttcttctcttagGTTGGTCGT
AAGGGCAACGAGGGCGACAAGGGCGGCGAGCTGGTGCTGCAGCGACCCAC
TACGAAGCACATGTTTGACAGAAAAACgtgagggaggaggcggggaggga
gggagggagggagggagggagggacaaggactgtgagcctacggataaga
aaatgaccactctccctgccactctccctccctccctccctccctccctc
cctccctccctccctccctccctcccttcctcactttctctctttctccc
tccctgccaccagCGCCCGCACGAAGCCGTATGTTATCACTCTCCTCAGT
GAAACCGAGCTCCTAGCCAAGgtatgcatcttccctctctctctacctcc
ctccctcccttcctcccttcctcctctccctccggccagcatcgtagaca
accaaatgtgacggcgcctccctccctctctccctccctccctccccccc
gccctcagGTGGAAAGACAAGCCCGTGTTGAGCTTTATATAGCCGGGGCA
ACAGCCCTCCTCTCCCTCCTCTCCGGCCTCCTCTCTCGACAAAGTATCGC
TTTGTTGAGCGAGCTGGTGGGAGGCGGAAGGAGCGAGGGAGGGATGGGGG
GAGCGAGGGAGTACAATTAAGGGTATGGCGCTTCTTCCTGCCCTCCCTCC
CCCCTCCTTTCTTCCCTTCCTCATCCTACCCTACTGTGTTTGAGACTCAC
CGCATGTGATCCAGCTGGTGGGAGACTGAGGAAGGAAGGAGGGAGGGGAG
GGAAGGAGGAAGGGATGAAGAGAACGAGCACAGCTGTGTTAACGTTGGGC
AGATGATGGATGAGGAAGGAGATGGGGGGAGGAAGCAGGGGAGACGGGAG
AAAACAGAGATGAGTGTTGGCACCCGCTGTAAGGAAGGGAAAGAGTTGTG
GAAGAGGCTGAGGCTGGGAAGAGACGAAGGAAGGACAGAGGGATGGAGGG
AAGGAGGGAAGGAGGGAGCGGTGTGTGCAGGCGGAGGGAGTAAACAAAAC
AAAGCGAAGAGGGAGGAGGGTGTTGAAACATTTTGAAAGAAGAACACGCA
AGACAGAGGAACGACGGTGAGGAGTATAGAAGAAAAAAAAAGGGAAAAAA
AAGGAGAAATAAGGAGAAGAAGACGATGTGTATCGTCCTTTT
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protein sequence of NO27G01500.1

>NO27G01500.1-protein ID=NO27G01500.1-protein|Name=NO27G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MGFRERLMEKIWSRERDLRTKAWVFGCVALVSCGVSSFYSYNFLKRFFLT
ALLRNVPKKRLADVQEGEYVKVVGEITTVHPHEAGAGAAGEAATAKTVPV
SATTQEEPGALKTPIAGVACVLLHALEYRVVEEMDRASGRFHRGKTKGKS
NDRDTTGGGLEYTKDIWKEKHEVIKEVKRSVPCYLVEASTGAGMALDIGG
NPLYLDLQTVHEEFKPIERIVEARSSRRTLGYKEVEKVLPLHAQLLVFAE
VGRKGNEGDKGGELVLQRPTTKHMFDRKTARTKPYVITLLSETELLAKVE
RQARVELYIAGATALLSLLSGLLSRQSIALLSELVGGGRSEGGMGGAREY
N*
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Synonyms
Publications