NO27G01490.3, NO27G01490.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01490.3
Unique NameNO27G01490.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1154
Alignment locationchr27:495512..497600 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:495512..497600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01490.3 vs.
Match: EWM20569.1 (hypothetical protein Naga_101597g1 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:    1 MPRLAHSFTFALALNLAIAGTVQAQTLRGAGNKGTATYTFNQPRINRARVDWCHGYDFGMGPGTDYPAAFKGCGEEAANAFCKMSGYEKA 91
            MP L H+ TF + L LA  G   A+ LRGA +K   T  +  P++N ARVDWC+GYDF MGPGTD PAAF GCG++AA+A+C++ GYEKA
Sbjct:    1 MPSLYHASTFVVGLLLASTGAGNAEVLRGAADKEEVTDIYTNPKVNGARVDWCYGYDFRMGPGTDNPAAFLGCGQDAADAYCRLRGYEKA 90
The following BLAST results are available for this feature:
BLAST of NO27G01490.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20569.11.300e-2156.67hypothetical protein Naga_101597g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01490NO27G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01490.3NO27G01490.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01490.3.cds1NO27G01490.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01490.3.cds2NO27G01490.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01490.3.cds3NO27G01490.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01490.3.cds4NO27G01490.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01490.3.cds5NO27G01490.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01490.3 ID=NO27G01490.3|Name=NO27G01490.3|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
CAAAATTGTTCTCAAGCCACCTCGAAAATTCTTTCATGCACACAAAAATC
TTCTGACCCTAACCCGAACCCTCTCTATATATTGCTGCCGCCGCATCCCC
CTGCCCGTTTTCACCGTCCACGCCATCGCATACTCAGCGTGGTTTCTGGT
GTGTCCTGACTCGTCGCCTGGGTAGTGCGAGCGTGGCAGAATGTCACATG
CATCTCGTTGGAATTTGTTCTTCAAGGGAGTGATTCCGAACCTATAACCA
TCCCGACCAACAGGCCAACCCCAAGCAACCAATCCAAGTGGTTAATAAAA
ATGCCGCGCCTTGCACACTCTTTCACCTTCGCCCTTGCCCTCAACCTTGC
CATCGCGGGCACGGTCCAAGCGCAGACGCTCCGTGGTGCCGGAAACAAGG
GCACTGCTACTTATACCTTCAACCAGCCCAGGATCAATCGCGCCCGTGTC
GACTGGTGCCATGGTTATGATTTCGGCATGGGACCCGGGACCGACTACCC
TGCTGCATTCAAGGGATGTGGAGAGGAGGCAGCTAATGCCTTTTGCAAAA
TGAGCGGCTATGAAAAGGCAGAGTCGTACGAGAAGGACGCTGGTATCACT
GATGTTACGATTTACCTTCAGCAGATGAAGCTCAACCCCAACCCCACCCG
CGACGCCTTCAAGGTCATTGTCTGCTCTCGCTCCGACAATAACCCCCCCC
CTGCCGTCCTCCCTCCCGCCGTGTCGGAGACGTGGCGCTATCCCAGGGTA
CGCACTTCCTTCCTTCCCTCTCTGCCACTGATCCCTCTATTCACTCGATT
TTTAAAATGTCGTCCTCACACCGACACAACCATCCACCCTCCCTCCTTCC
CTCCTTCCGTCCCTCTCTCCCTCCATCCAGGTGTCTGGCATCCGCATGGA
CTGGTGCAGTGCTTACGATGGCCGTGTCGGCGGCCCACCTAACAATCCCG
ATGCATACCTCGCCTGCGGCCAATCTGCCGCAGACTCCTTCTGTCGCTCC
GTAGGGTATCAATCCGCGGGGCGGTTCGAGAAAGACGAGCAGATCGAGGA
TGAAACAATTTTCATAGCCCAAAGCGCGCTCAACACTCACAGTCCCAAGC
GTGACGCATTCCTCTACATCACCTGCGTGAAATAAAAGCCTTCCTTTCTT
CCTT
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protein sequence of NO27G01490.3

>NO27G01490.3-protein ID=NO27G01490.3-protein|Name=NO27G01490.3|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MPRLAHSFTFALALNLAIAGTVQAQTLRGAGNKGTATYTFNQPRINRARV
DWCHGYDFGMGPGTDYPAAFKGCGEEAANAFCKMSGYEKAESYEKDAGIT
DVTIYLQQMKLNPNPTRDAFKVIVCSRSDNNPPPAVLPPAVSETWRYPRV
RTSFLPSLPLIPLFTRFLKCRPHTDTTIHPPSFPPSVPLSLHPGVWHPHG
LVQCLRWPCRRPT*
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mRNA from alignment at chr27:495512..497600+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01490.3 ID=NO27G01490.3|Name=NO27G01490.3|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp|location=Sequence derived from alignment at chr27:495512..497600+ (Nannochloropsis oceanica)
CAAAATTGTTCTCAAGCCACCTCGAAAATTCTTTCATGCACACAAAAATC
TTCTGACCCTAACCCGAACCCTCTCTATATATTGCTGCCGCCGCATCCCC
CTGCCCGTTTTCACCGTCCACGCCATCGCATACTCAGCGTGGTTTCTGGT
GTGTCCTGACTCGTCGCCTGGGTAGTGCGAGCGTGGCAGAATGTCACATG
CATCTCGTTGGAATTTGTTCTTCAAGGGAGTGATTCCGAACCTATAACCA
TCCCGACCAACAGGCCAACCCCAAGCAACCAATCCAAGTGGTTAATAAAA
ATGCCGCGCCTTGCACACTCTTTCACCTTCGCCCTTGCCCTCAACCTTGC
CATCGCGGGCACGGTCCAAGCGCAGGTATGTGTCCGTGTACAGGTGAAGA
GCAGGTGTCGAGATGTGTGGCATTATCCCACTTAACTCTCTCTCCCTCCC
TCCCTTCCGACATAGACGCTCCGTGGTGCCGGAAACAAGGGCACTGCTAC
TTATACCTTCAACCAGCCCAGGATCAATCGCGCCCGTGTCGACTGGTGCC
ATGGTACGTGCATGTTTACCCTCTTTCTCCCCCTTTCCCGCCCCCTCTTC
CTCCTCCTCTTCCTCCCCCTCTTTCTCGCTCTCCCTCCATCCCTCTCTCT
CTGCTCACTCTCTTTCCCCCTCTCCCCTCCCTCTCCCTTTCTGCCAGGTT
ATGATTTCGGCATGGGACCCGGGACCGACTACCCTGCTGCATTCAAGGGA
TGTGGAGAGGAGGCAGCTAATGCCTTTTGCAAAATGAGCGGCTATGAAAA
GGCAGAGGTAGGAAGGTCGGGAGGAAGGAGGAGGAGGAGGGAGGGGCAAA
GGGAGGGAGGGAGGGGGAAACGGGAGAAACGGGAGAAACGAAGGTAGACA
GAGGACCGAAGGATTGTATCAACGAATTTAACAAGCGGCCAACCGGACGT
GAGCGATAAAATCGTCCTCCATCTCACTGTAGCCACCTCATTCGCTCCCT
CTTTTCCTCCCTCCGTCCTTCCCTCCCCTAGTCGTACGAGAAGGACGCTG
GTATCACTGATGTTACGATTTACCTTCAGCAGATGAAGCTCAACCCCAAC
CCCACCCGCGACGCCTTCAAGGTCATTGTCTGCTCTCGCTCCGGTACGGA
GGGCAGGAGAGAGGGCGGGACAGAGGTGGGAGTAGACGGCTTTAATATCG
ATCATCGAGGGTGCAATCGCTTATCCTCATCGCTTCTTCTTTCGACCTCA
TCCTCCCTACCGCAGACAATAACCCCCCCCCTGCCGTCCTCCCTCCCGCC
GTGTCGGAGACGTGGCGCTATCCCAGGGTACGCACTTCCTTCCTTCCCTC
TCTGCCACTGATCCCTCTATTCACTCGATTTTTAAAATGTCGTCCTCACA
CCGACACAACCATCCACCCTCCCTCCTTCCCTCCTTCCGTCCCTCTCTCC
CTCCATCCAGGTGTCTGGCATCCGCATGGACTGGTGCAGTGCTTACGATG
GCCGTGTCGGCGGCCCACCTAACAATCCCGATGGTAAGCCTTCCTTTCAT
CCCTTATTTCTACCTCACTAGCATGCTTTGCCTGTCACGAGCCGGAGAAA
GACAAGCAACTAAAACCAATAAGTAGAAAAAAATCGAAAACAATATGACA
AATAATTTATAAATTATGTAACAAGTTGAATGAACTAATGAATAGAATAT
GTTTGTATGTATAAATTAACCCATGAAAGTGAGTAAAATGATCACGTCTA
TAAGTAAGTCAGTAAAATAGAATGTGATAAAATAAATGCAGAAATATGTA
CAAATAAATAAAGTATAAAATAAAAATAAAATTAATCAATTGCACCCATC
ATGTACATACATGCATACATATATATTCATAAACACAGCATACCTCGCCT
GCGGCCAATCTGCCGCAGACTCCTTCTGTCGCTCCGTAGGGTATCAATCC
GCGGGGCGGTTCGAGAAAGACGAGCAGATCGAGGATGAAACAATTTTCAT
AGCCCAAAGCGCGCTCAACACTCACAGTCCCAAGCGTGACGCATTCCTCT
ACATCACCTGCGTGAAATAAAAGCCTTCCTTTCTTCCTT
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Coding sequence (CDS) from alignment at chr27:495512..497600+

>NO27G01490.3 ID=NO27G01490.3|Name=NO27G01490.3|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr27:495512..497600+ (Nannochloropsis oceanica)
ATGCCGCGCCTTGCACACTCTTTCACCTTCGCCCTTGCCCTCAACCTTGC
CATCGCGGGCACGGTCCAAGCGCAGACGCTCCGTGGTGCCGGAAACAAGG
GCACTGCTACTTATACCTTCAACCAGCCCAGGATCAATCGCGCCCGTGTC
GACTGGTGCCATGGTTATGATTTCGGCATGGGACCCGGGACCGACTACCC
TGCTGCATTCAAGGGATGTGGAGAGGAGGCAGCTAATGCCTTTTGCAAAA
TGAGCGGCTATGAAAAGGCAGAGTCGTACGAGAAGGACGCTGGTATCACT
GATGTTACGATTTACCTTCAGCAGATGAAGCTCAACCCCAACCCCACCCG
CGACGCCTTCAAGGTCATTGTCTGCTCTCGCTCCGACAATAACCCCCCCC
CTGCCGTCCTCCCTCCCGCCGTGTCGGAGACGTGGCGCTATCCCAGGGTA
CGCACTTCCTTCCTTCCCTCTCTGCCACTGATCCCTCTATTCACTCGATT
TTTAAAATGTCGTCCTCACACCGACACAACCATCCACCCTCCCTCCTTCC
CTCCTTCCGTCCCTCTCTCCCTCCATCCAGGTGTCTGGCATCCGCATGGA
CTGGTGCAGTGCTTACGATGGCCGTGTCGGCGGCCCACCTAA
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Synonyms
Publications