NO27G01490, NO27G01490 (gene) Nannochloropsis oceanica

Overview
NameNO27G01490
Unique NameNO27G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2089
Alignment locationchr27:495512..497600 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:495512..497600 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G01490 vs. NCBI_GenBank
Match: EWM20569.1 (hypothetical protein Naga_101597g1 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:    1 MPRLAHSFTFALALNLAIAGTVQAQTLRGAGNKGTATYTFNQPRINRARVDWCHGYDFGMGPGTDYPAAFKGCGEEAANAFCKMSGYEKA 91
            MP L H+ TF + L LA  G   A+ LRGA +K   T  +  P++N ARVDWC+GYDF MGPGTD PAAF GCG++AA+A+C++ GYEKA
Sbjct:    1 MPSLYHASTFVVGLLLASTGAGNAEVLRGAADKEEVTDIYTNPKVNGARVDWCYGYDFRMGPGTDNPAAFLGCGQDAADAYCRLRGYEKA 90
The following BLAST results are available for this feature:
BLAST of NO27G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20569.11.300e-2156.67hypothetical protein Naga_101597g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01490.1NO27G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01490.2NO27G01490.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01490.3NO27G01490.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608382gene_9929Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101597g1gene9838Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01490.1NO27G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01490.2NO27G01490.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01490.3NO27G01490.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01490 ID=NO27G01490|Name=NO27G01490|organism=Nannochloropsis oceanica|type=gene|length=2089bp
CAAAATTGTTCTCAAGCCACCTCGAAAATTCTTTCATGCACACAAAAATC
TTCTGACCCTAACCCGAACCCTCTCTATATATTGCTGCCGCCGCATCCCC
CTGCCCGTTTTCACCGTCCACGCCATCGCATACTCAGCGTGGTTTCTGGT
GTGTCCTGACTCGTCGCCTGGGTAGTGCGAGCGTGGCAGAATGTCACATG
CATCTCGTTGGAATTTGTTCTTCAAGGGAGTGATTCCGAACCTATAACCA
TCCCGACCAACAGGCCAACCCCAAGCAACCAATCCAAGTGGTTAATAAAA
ATGCCGCGCCTTGCACACTCTTTCACCTTCGCCCTTGCCCTCAACCTTGC
CATCGCGGGCACGGTCCAAGCGCAGgtatgtgtccgtgtacaggtgaaga
gcaggtgtcgagatgtgtggcattatcccacttaactctctctccctccc
tcccttccgacatagACGCTCCGTGGTGCCGGAAACAAGGGCACTGCTAC
TTATACCTTCAACCAGCCCAGGATCAATCGCGCCCGTGTCGACTGGTGCC
ATGgtacgtgcatgtttaccctctttctccccctttcccgccccctcttc
ctcctcctcttcctccccctctttctcgctctccctccatccctctctct
ctgctcactctctttccccctctcccctccctctccctttctgccagGTT
ATGATTTCGGCATGGGACCCGGGACCGACTACCCTGCTGCATTCAAGGGA
TGTGGAGAGGAGGCAGCTAATGCCTTTTGCAAAATGAGCGGCTATGAAAA
GGCAGAGgtaggaaggtcgggaggaaggaggaggaggagggaggggcaaa
gggagggagggagggggaaacgggagaaacgggagaaacgaaggtagaca
gaggaccgaaggattgtatcaacgaatttaacaagcggccaaccggacgt
gagcgataaaatcgtcctccatctcactgtagccacctcattcgctccct
cttttcctccctccgtccttccctcccctagTCGTACGAGAAGGACGCTG
GTATCACTGATGTTACGATTTACCTTCAGCAGATGAAGCTCAACCCCAAC
CCCACCCGCGACGCCTTCAAGGTCATTGTCTGCTCTCGCTCCGgtacgga
gggcaggagagagggcgggacagaggtgggagtagacggctttaatatcg
atcatcgagggtgcaatcgcttatcctcatcgcttcttctttcgacctca
tcctccctaccgcagACAATAACCCCCCCCCTGCCGTCCTCCCTCCCGCC
GTGTCGGAGACGTGGCGCTATCCCAGGgtacgcacttccttccttccctc
tctgccactgatccctctattcactcgatttttaaaatgtcgtcctcaca
ccgacacaaccatccaccctccctccttccctccttccgtccctctctcc
ctccatccagGTGTCTGGCATCCGCATGGACTGGTGCAGTGCTTACGATG
GCCGTGTCGGCGGCCCACCTAACAATCCCGATGGTAAGCCTTCCTTTCAT
CCCTTATTTCTACCTCACTAGCATGCTTTGCCTGTCACGAGCCGGAGAAA
GACAAGCAACTAAAACCAATAAGTAGAAAAAAATCGAAAACAATATGACA
AATAATTTATAAATTATGTAACAAGTTGAATGAACTAATGAATAGAATAT
GTTTGTATGTATAAATTAACCCATGAAAGTGAGTAAAATGATCACGTCTA
TAAGTAAGTCAGTAAAATAGAATGTGATAAAATAAATGCAGAAATATGTA
CAAATAAATAAAGTATAAAATAAAAATAAAATTAATCAATTGCACCCATC
ATGTACATACATGCATACATATATATTCATAAACACAGCATACCTCGCCT
GCGGCCAATCTGCCGCAGACTCCTTCTGTCGCTCCGTAGGGTATCAATCC
GCGGGGCGGTTCGAGAAAGACGAGCAGATCGAGGATGAAACAATTTTCAT
AGCCCAAAGCGCGCTCAACACTCACAGTCCCAAGCGTGACGCATTCCTCT
ACATCACCTGCGTGAAATAAAAGCCTTCCTTTCTTCCTT
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protein sequence of NO27G01490.1

>NO27G01490.1-protein ID=NO27G01490.1-protein|Name=NO27G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPRLAHSFTFALALNLAIAGTVQAQTLRGAGNKGTATYTFNQPRINRARV
DWCHGYDFGMGPGTDYPAAFKGCGEEAANAFCKMSGYEKAESYEKDAGIT
DVTIYLQQMKLNPNPTRDAFKVIVCSRSDNNPPPAVLPPAVSETWRYPRV
SGIRMDWCSAYDGRVGGPPNNPDAYLACGQSAADSFCRSVGYQSAGRFEK
DEQIEDETIFIAQSALNTHSPKRDAFLYITCVK*
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protein sequence of NO27G01490.2

>NO27G01490.2-protein ID=NO27G01490.2-protein|Name=NO27G01490.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MPRLAHSFTFALALNLAIAGTVQAQTLRGAGNKGTATYTFNQPRINRARV
DWCHGYDFGMGPGTDYPAAFKGCGEEAANAFCKMSGYEKAESYEKDAGIT
DVTIYLQQMKLNPNPTRDAFKVIVCSRSDNNPPPAVLPPAVSETWRYPRV
SGIRMDWCSAYDGRVGGPPNNPDGKPSFHPLFLPH*
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protein sequence of NO27G01490.3

>NO27G01490.3-protein ID=NO27G01490.3-protein|Name=NO27G01490.3|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MPRLAHSFTFALALNLAIAGTVQAQTLRGAGNKGTATYTFNQPRINRARV
DWCHGYDFGMGPGTDYPAAFKGCGEEAANAFCKMSGYEKAESYEKDAGIT
DVTIYLQQMKLNPNPTRDAFKVIVCSRSDNNPPPAVLPPAVSETWRYPRV
RTSFLPSLPLIPLFTRFLKCRPHTDTTIHPPSFPPSVPLSLHPGVWHPHG
LVQCLRWPCRRPT*
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Synonyms
Publications