NO27G01150, NO27G01150 (gene) Nannochloropsis oceanica

Overview
NameNO27G01150
Unique NameNO27G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr27:369371..370438 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:369371..370438 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO27G01150 vs. NCBI_GenBank
Match: EWM20983.1 (hypothetical protein Naga_100487g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 5.300e-61
Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0
Query:   81 ITTKRHALPPFDSPLDPATLESMAXXXXXXXXXXXXXXXIHEVTPEQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEALSEAAKRRRAGG 230
            +  ++  LPPFDSPLDPATLE MA               ++EVT EQLWVGFIAGVFPF+WAG+EFWKRID QQRCGVCQGSGLVYE+A+GKSL+  RKCYACGGFLPWAGW+RFWLSNLDIGNGGVLQRPA DYEALSEAAKRRRAGG
Sbjct:   98 VIRRQAMLPPFDSPLDPATLEGMA---AASSAAGSTGGALNEVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG 243          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: CBJ27875.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.9 bits (333), Expect = 1.300e-27
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0
Query:  126 EQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEALSEAAKRRRAG 229
            +++ +G  A +  + WA YEF KRI TQ+ C VC+GSGLV  S +GK L   +KCYACGGFLPW  W +FW +N+D+GNGGVLQRPA DY+ L+EAA+  + G
Sbjct:   50 DKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAARAAKDG 152          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: KXZ46869.1 (hypothetical protein GPECTOR_40g603 [Gonium pectorale])

HSP 1 Score: 97.4 bits (241), Expect = 6.100e-17
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 0
Query:  127 QLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRP 212
            ++W+GF+AGV PF    YEF KRI  Q RC VC G GLV  +  GK L   RKC  CGGF PW  WK F  S    GNGG LQ+P
Sbjct:   74 EIWIGFVAGVVPFAIGSYEFGKRIIIQLRCEVCGGRGLVPSAGPGKYL---RKCPQCGGFFPWISWKMFLSSTAAPGNGGPLQQP 155          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: XP_003082370.1 (unnamed product [Ostreococcus tauri] >CAL57316.1 unnamed product [Ostreococcus tauri])

HSP 1 Score: 97.1 bits (240), Expect = 8.000e-17
Identity = 51/113 (45.13%), Postives = 64/113 (56.64%), Query Frame = 0
Query:  122 EVTPEQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEALSEAAKRRRAGGKEGKD 235
            EV   QLW GFIAG+ PF  A YEF KR+  Q+RC  C G+GLV     G+ +    KC ACGGFLPW  W+RF  S  ++GNGGV++ P     A     K   A  +  +D
Sbjct:   30 EVEQWQLWFGFIAGLSPFAIAAYEFGKRVLIQKRCARCAGAGLVVLGDDGRKV----KCPACGGFLPWESWERFLTS--EVGNGGVVRAPKGQTSAFYSVEKAVEASERMVRD 136          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: OUS46616.1 (hypothetical protein BE221DRAFT_191790 [Ostreococcus tauri])

HSP 1 Score: 97.1 bits (240), Expect = 8.000e-17
Identity = 51/113 (45.13%), Postives = 64/113 (56.64%), Query Frame = 0
Query:  122 EVTPEQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEALSEAAKRRRAGGKEGKD 235
            EV   QLW GFIAG+ PF  A YEF KR+  Q+RC  C G+GLV     G+ +    KC ACGGFLPW  W+RF  S  ++GNGGV++ P     A     K   A  +  +D
Sbjct:   60 EVEQWQLWFGFIAGLSPFAIAAYEFGKRVLIQKRCARCAGAGLVVLGDDGRKV----KCPACGGFLPWESWERFLTS--EVGNGGVVRAPKGQTSAFYSVEKAVEASERMVRD 166          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: XP_001420667.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO98960.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 95.9 bits (237), Expect = 1.800e-16
Identity = 56/119 (47.06%), Postives = 65/119 (54.62%), Query Frame = 0
Query:  127 QLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLV-YESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEAL----------SEAAKRRRAGGKEGKD 235
            QLW GFIAGV PF  A YEF KR+  Q+RC +C GSGLV  E + G  L    KC ACGGFLPW  W+RF  S  + GNGGV++ P     A            E A RR   G+   D
Sbjct:   64 QLWFGFIAGVSPFAIAAYEFGKRVLIQRRCALCAGSGLVEVERSRGARLV---KCTACGGFLPWQSWERFLSS--EAGNGGVVRAPKGQTSAFYSVEKATAASREMAARRARDGEASSD 177          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: XP_001695614.1 (predicted protein [Chlamydomonas reinhardtii] >PNW84472.1 hypothetical protein CHLRE_03g145567v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 94.7 bits (234), Expect = 4.000e-16
Identity = 50/107 (46.73%), Postives = 57/107 (53.27%), Query Frame = 0
Query:  127 QLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRP------------APDYEALSEA 222
            ++W+GFIAGV PF    YEF KRI  Q RC VC G GLV     GK     RKC  CGGF PW  W+ F  S    GNGG LQ+P            APD   ++EA
Sbjct:  170 EIWLGFIAGVVPFAIGSYEFGKRILIQLRCEVCGGRGLVPSGGAGKD-KYLRKCPQCGGFFPWISWQMFLSSTATPGNGGPLQQPRGQTSVLYSVPDAPDPARMAEA 275          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: XP_007512147.1 (predicted protein [Bathycoccus prasinos] >CCO66235.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 94.7 bits (234), Expect = 4.000e-16
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 0
Query:  123 VTPEQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFW--LSNLDIGNGGVLQRPAP------DYEALSEAAKRRRA 228
            + P QL+ GF AG+ PFI A YEF KRI  Q++C +CQGSGL+      K    ARKC ACGGFLPW  W+RF    +   IGNGG ++ P        D E    A+++R+A
Sbjct:   85 IEPWQLYFGFFAGIAPFIIAAYEFGKRILIQRKCALCQGSGLI------KKGEYARKCTACGGFLPWESWERFLDVGTTAKIGNGGRVRVPEGQTSVFYDVEKTVLASEKRKA 191          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: PSC75045.1 (hypothetical protein C2E20_1799 [Micractinium conductrix])

HSP 1 Score: 93.6 bits (231), Expect = 8.800e-16
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 0
Query:  127 QLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRP 212
            ++WVGF+AGV PFI A  EF KRI  Q+RC  C G GLV     G+ L   RKC  CGG LPW GWK F+ S    GNGG L +P
Sbjct:  125 EIWVGFVAGVVPFIIATVEFTKRIIIQRRCPACSGRGLVQR---GRYL---RKCPECGGLLPWLGWKEFFFSTATPGNGGPLLQP 203          
BLAST of NO27G01150 vs. NCBI_GenBank
Match: XP_005644785.1 (hypothetical protein COCSUDRAFT_54440 [Coccomyxa subellipsoidea C-169] >EIE20241.1 hypothetical protein COCSUDRAFT_54440 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 92.0 bits (227), Expect = 2.600e-15
Identity = 48/107 (44.86%), Postives = 57/107 (53.27%), Query Frame = 0
Query:  122 EVTPEQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEALSEAAKRRRAG 229
            EV PE +WVG IA   PF+   +EF KRI  Q+RC  CQGSGLV           ARKC  CGGF PW GW +F+ S    GNGG L+ P        +   +R  G
Sbjct:   31 EVGPE-IWVGTIAACVPFVIGSWEFGKRIIIQRRCSRCQGSGLVMRG------QFARKCPDCGGFFPWQGWWKFFTSTAAPGNGGPLRAPKGQSSVFYKVPSKRENG 130          
The following BLAST results are available for this feature:
BLAST of NO27G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20983.15.300e-6175.84hypothetical protein Naga_100487g1, partial [Nanno... [more]
CBJ27875.11.300e-2755.34conserved unknown protein [Ectocarpus siliculosus][more]
KXZ46869.16.100e-1754.12hypothetical protein GPECTOR_40g603 [Gonium pector... [more]
XP_003082370.18.000e-1745.13unnamed product [Ostreococcus tauri] >CAL57316.1 u... [more]
OUS46616.18.000e-1745.13hypothetical protein BE221DRAFT_191790 [Ostreococc... [more]
XP_001420667.11.800e-1647.06predicted protein [Ostreococcus lucimarinus CCE990... [more]
XP_001695614.14.000e-1646.73predicted protein [Chlamydomonas reinhardtii] >PNW... [more]
XP_007512147.14.000e-1646.02predicted protein [Bathycoccus prasinos] >CCO66235... [more]
PSC75045.18.800e-1654.12hypothetical protein C2E20_1799 [Micractinium cond... [more]
XP_005644785.12.600e-1544.86hypothetical protein COCSUDRAFT_54440 [Coccomyxa s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01150.2NO27G01150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01150.1NO27G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603665gene_8704Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100487g1gene9437Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01150.2NO27G01150.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01150.1NO27G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01150 ID=NO27G01150|Name=NO27G01150|organism=Nannochloropsis oceanica|type=gene|length=1068bp
ACAGCAGCCATGGTACCACAAGCCGCTCCACTAGCATTTAGAACCCGCCA
CGTCGCCCTTCTTCTTGTAGTCCTCGTCATCGCCTTGCTTGCTGCGACCG
CGTCGTCCTCGTCCGCGTCTTCGCCCCTTGGGTTTGTACCCTCTACACAG
CAGCTCCAGCAGACCTCCTCCTCGAGCTCCACTTCATGCTGCGGTGGTCG
GCACCCTGCTTCTCCCGCGCACCAGCACTTCCACGCAAGCCGTGCCGCAA
TCACAACGAAGCGACACGCGCTCCCACCTTTTGACAGCCCCCTCGATCCC
GCCACCTTGGAGAGCATGGCTGCCACTGCTGCTGCGTCCTCCGCTGCCGC
TAGTGCCGGCGGGGCTATTCACGAAGTCACTCCCGAGCAGCTTTGGgtaa
gttttcgtgtgtatatgcgtgcgcttggtgggacgactaattgtcctctc
aaagtattcatgtcgacccctctcctcccccctctctcccagGTTGGTTT
TATCGCTGGCGTCTTCCCTTTCATCTGGGCAGGGTACGAATTCTGGAAAC
GCATCGATACACAGCAACGGTGTGGGGTCTGTCAAGGCTCGGGTCTAGTG
TACGAAAGCGCGACGGGTAAAAGTCTCACTACAGCCCGAAAGTGCTACGC
GTGTGGTGGTTTTTTGCCGgtgaggaaggagggagagagggagggaggga
ggcgtatcttttgtaagacaccacaagtgatataattatcattgatgtcg
tcgtcatcatcatcatcatcatcatcatcgtcatcatcttcaccacagta
actgttccattttgcccacaccctttctcacatttcccctaatccctccc
tccctcgctctttcccggcctccagTGGGCAGGTTGGAAGCGGTTCTGGC
TGAGCAATCTGGACATTGGAAATGGAGGTGTACTGCAGCGACCCGCCCCG
GATTATGAAGCCTTGAGTGAGGCGGCGAAGAGGAGGAGGGCGGGAGGGAA
GGAGGGGAAAGACTAGACCGAAAAGAAGAGCGAACGAAAGTGTGTACCAC
AGATAGAACCACGTAGGG
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protein sequence of NO27G01150.2

>NO27G01150.2-protein ID=NO27G01150.2-protein|Name=NO27G01150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MVPQAAPLAFRTRHVALLLVVLVIALLAATASSSSASSPLGFVPSTQQLQ
QTSSSSSTSCCGGRHPASPAHQHFHASRAAITTKRHALPPFDSPLDPATL
ESMAATAAASSAAASAGGAIHEVTPEQLWVGFIAGVFPFIWAGYEFWKRI
DTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPVRKEGEREGGRR
IFCKTPQVI*
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protein sequence of NO27G01150.1

>NO27G01150.1-protein ID=NO27G01150.1-protein|Name=NO27G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MVPQAAPLAFRTRHVALLLVVLVIALLAATASSSSASSPLGFVPSTQQLQ
QTSSSSSTSCCGGRHPASPAHQHFHASRAAITTKRHALPPFDSPLDPATL
ESMAATAAASSAAASAGGAIHEVTPEQLWVGFIAGVFPFIWAGYEFWKRI
DTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNL
DIGNGGVLQRPAPDYEALSEAAKRRRAGGKEGKD*
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Synonyms
Publications