NO27G00240.1, NO27G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00240.1
Unique NameNO27G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr27:85293..87636 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:85293..87636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00240NO27G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00240.1NO27G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00240.1.cds1NO27G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds2NO27G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds3NO27G00240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds4NO27G00240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds5NO27G00240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds6NO27G00240.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds7NO27G00240.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00240.1.cds8NO27G00240.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00240.1 ID=NO27G00240.1|Name=NO27G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
ATGCCAGGTAACGCCTCATACGGGAAGACCTGGGTTGGAGTAAAGATGCC
TCGGCGCACGAGCCGCATTCCCGCCAGCGAAGAGATTCAAGCAGCCTCCG
CCGACACGGAAGCTATGGCTGAGACGGGTGCTGCAGAGACAGAGGTTGAT
TCATCCAGTGAATGGACCCTGGAGTACGACCGCAAGACGGGTCACTTTTA
TCATTTTAATACTCGCACGGGGGAAAGCGAGTGGGTGGAGGAAGAGGAAG
AAGAGGATGGGAAAGAGGAAGAGGAAGGGGTAGAAACTGACTCCGGACAG
GGACGGACGGTGGGAGAGGGAAAAGAGAGGAGGGGAAGGGAGAGAGAGGA
GGTGGTGGGATCTGAGCGGGCATACCCACTGGCATTTACAGCCAAGTTCG
TCTTCGACACTTGTTGCTGTGAATGTCCTTTTGCATTGCTGGAGGCAAGC
CTGCGTGCCCCACTGTACCTAGGAGGAGGCTTCCTTCTCTTCCTTCGCGC
ACTTCTGACGGGCAATCATACTATCGAAGCAACGCAATGGAGGCTGTGGA
TACGGGAAGGCCTCCTCTTTCTCGCCTCCTCCCTCTCCCTCCTTTTCCCC
GGCCTAGTCCTCTATGTCTACCGGGGGTTTCACCCTGAAGCAGAGGAGTG
GGACTTGGCTGCCCTCCCCACCCTCCTCGGCAATGTGGACCCCCGTCGTT
TTTATTCTTTCTCCTACGGGCAGGGCAGCCTGGCATCCAACGTAGCATAT
AACGCAGTAATGGATTCCCTCGACTCATGGGGCGACACTATCTTATATCC
ACCTAAGAGTTTGAGTGGCGCTCGCTTCGATCATCATCGATTGAGTGCCC
TTTCTTATAGCGCCTACCCTGGCGACGATGAGGAGGACGGTATCTCGCTG
TGGGAGGGGAACTGGGGAAGGCAGCGTCTGGAACAACGGTTGCCGCACGA
AGAGTGGGAAAAATTAAAAGAAGAAAATCATCGGCTGGCTGTGGGAGGAG
TATGA
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protein sequence of NO27G00240.1

>NO27G00240.1-protein ID=NO27G00240.1-protein|Name=NO27G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MPGNASYGKTWVGVKMPRRTSRIPASEEIQAASADTEAMAETGAAETEVD
SSSEWTLEYDRKTGHFYHFNTRTGESEWVEEEEEEDGKEEEEGVETDSGQ
GRTVGEGKERRGREREEVVGSERAYPLAFTAKFVFDTCCCECPFALLEAS
LRAPLYLGGGFLLFLRALLTGNHTIEATQWRLWIREGLLFLASSLSLLFP
GLVLYVYRGFHPEAEEWDLAALPTLLGNVDPRRFYSFSYGQGSLASNVAY
NAVMDSLDSWGDTILYPPKSLSGARFDHHRLSALSYSAYPGDDEEDGISL
WEGNWGRQRLEQRLPHEEWEKLKEENHRLAVGGV*
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mRNA from alignment at chr27:85293..87636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00240.1 ID=NO27G00240.1|Name=NO27G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp|location=Sequence derived from alignment at chr27:85293..87636- (Nannochloropsis oceanica)
ATGCCAGGTAACGCCTCATACGGGAAGACCTGGGTTGGAGTAAAGATGCC
TCGGCGCACGAGCCGCATTCCCGCCAGCGAAGAGATTCAAGCAGCCTCCG
CCGACACGGAAGCTATGGCTGAGACGGGTGCTGCAGAGACAGAGGTTGAT
TCATCCAGGTTGGTTCACACATCAGTGGTTGTTATGATAACAGGGATAGT
ATGCAGGCCTTAAGAGTTCCACCGCTCACCCCTGCCCCCCCCTCCGCCCC
CAAACTCCCTTCCTCTTTCTCAGTGAATGGACCCTGGAGTACGACCGCAA
GACGGGTCACTTTTATCATTTTAATACTCGCACGGGGGAAAGCGAGTGGG
TGGAGGAAGAGGAAGAAGAGGATGGGAAAGAGGAAGAGGAAGGGGTAGAA
ACTGACTCCGGACAGGGACGGACGGTGGGAGAGGGAAAAGAGAGGAGGGG
AAGGGAGAGAGAGGAGGTGGTGGGATCTGAGCGGGCATACCCACTGGCAT
TTACAGGTAAGAATATGCAAAGAAAGAGAAGGAGGGAGGAAAGGAGGGCG
GGAAAGAGGAAGGAAGACAGAGAGAGATGTAAAAGTGGAACACGGTTTTC
AATGAGGGCAAGGCGGTCGGTCAGGTTCCTCCTCTTTTTTTGTTTTCCGT
ACAAGTGCGCCTTCCTCATTCTCTTCTCCCTCCCTCCTTCCCTCCCTCCC
TTCTCCCCTTTCTCCGAGCAGCCAAGTTCGTCTTCGACACTTGTTGCTGT
GAATGTCCTTTTGCATTGCTGGAGGCAAGCCTGCGTGCCCCACGTACGTA
TGTAGGGAGGGAGGGGGGTAGGGAGGGAAGGAGGGAGAGGGATTAAGATG
CTGAATCAAGAGATACAGCCTTGTAAAGATTTCCACAAATGAGGTATGCA
CATCACACTCATCCCTCACTCCCCCTCTTTCCTTCCCTTCCTGCCTGCCT
GTCTCTCTCCCTTCCTCCCTCCCTCCTTCAGTGTACCTAGGAGGAGGCTT
CCTTCTCTTCCTTCGCGCACTTCTGACGGGCAATCATACTATCGAAGCAA
CGCAATGGAGGCTGTGGATACGGGAAGGTATGGAGGGGTTATAGACGGAG
GGAGGGAGGGAGGGAGGAAAGGAGGACTACATTCTTTTCATCAATGCTGA
TCTCGCTGTTTCCGTGTCGCTCCCTCCCTCCCTTTCGCCCCTCCGCAGGC
CTCCTCTTTCTCGCCTCCTCCCTCTCCCTCCTTTTCCCCGGCCTAGTCCT
CTATGTCTACCGGGGGTTTCACCCTGAAGCAGAGGAGTGGGACTTGGCTG
GTAGGGAGGGGGGGAGGGAGGGAGGGAGGAAGGAAAGAGGGGGGTGGGGA
AGGGTGGACGGTCAAGCATCGCGTCACACACACACACATACACACACAGC
ATCAAGGTGAAGAGAATGGCTTGGAACTACGCCCCCCGCTTAATATTATC
TTCAAACCTGCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAG
CCCTCCCCACCCTCCTCGGCAATGTGGACCCCCGTCGTTTTTATTCTTTC
TCCTACGGGCAGGGCAGCCTGGCATCCAACGTAGCATATAACGCAGTAAT
GGGTAAGACCTGAAGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGGAG
GGTGGGTGGGTGGGAGGGAGGGAGGGGAAGAAACAAACATTACCTTGCTC
GTTCACGTTTCTTTTTCTTCCCTCTCTTTCTTTCTCTCTCCCTTCCCCCC
TCTTACCTTCCTTCTCTCCATTCCTTTCTCTCTCCTTTTGTCCCTCTTAC
TCCTTCCCTCCCTTCGTGTCCCTCTCTCCTTCCTCCTCTTCCGTAGATTC
CCTCGACTCATGGGGCGACACTATCTTATATCCACCTAAGAGTTTGAGTG
GCGCTCGCTTCGGTAAGGAAGAGAGGAGGGGACGGAGGAGGGGACGGAGG
GAGAGCATAGAGGAAGAGATAGAGAAAAGGAGAAGAAAGGAGTGAAGGGG
TGGAGGGAGGGAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGAAAAGTGAATACACAGATCAAAAAGCTGTTCTTTGTTAAG
CAAGCTCATATACTCACGCACCAAAAATTGTTCATTCCCTTTCACTGCAA
TCATCAAATGAATCGTAGATCATCATCGATTGAGTGCCCTTTCTTATAGC
GCCTACCCTGGCGACGATGAGGAGGACGGTATCTCGCTGTGGGAGGGGAA
CTGGGGAAGGCAGCGTCTGGAACAACGGTTGCCGCACGAAGAGTGGGAAA
AATTAAAAGAAGAAAATCATCGGCTGGCTGTGGGAGGAGTATGA
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Coding sequence (CDS) from alignment at chr27:85293..87636-

>NO27G00240.1 ID=NO27G00240.1|Name=NO27G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr27:85293..87636- (Nannochloropsis oceanica)
ATGCCAGGTAACGCCTCATACGGGAAGACCTGGGTTGGAGTAAAGATGCC
TCGGCGCACGAGCCGCATTCCCGCCAGCGAAGAGATTCAAGCAGCCTCCG
CCGACACGGAAGCTATGGCTGAGACGGGTGCTGCAGAGACAGAGGTTGAT
TCATCCAGTGAATGGACCCTGGAGTACGACCGCAAGACGGGTCACTTTTA
TCATTTTAATACTCGCACGGGGGAAAGCGAGTGGGTGGAGGAAGAGGAAG
AAGAGGATGGGAAAGAGGAAGAGGAAGGGGTAGAAACTGACTCCGGACAG
GGACGGACGGTGGGAGAGGGAAAAGAGAGGAGGGGAAGGGAGAGAGAGGA
GGTGGTGGGATCTGAGCGGGCATACCCACTGGCATTTACAGCCAAGTTCG
TCTTCGACACTTGTTGCTGTGAATGTCCTTTTGCATTGCTGGAGGCAAGC
CTGCGTGCCCCACTGTACCTAGGAGGAGGCTTCCTTCTCTTCCTTCGCGC
ACTTCTGACGGGCAATCATACTATCGAAGCAACGCAATGGAGGCTGTGGA
TACGGGAAGGCCTCCTCTTTCTCGCCTCCTCCCTCTCCCTCCTTTTCCCC
GGCCTAGTCCTCTATGTCTACCGGGGGTTTCACCCTGAAGCAGAGGAGTG
GGACTTGGCTGCCCTCCCCACCCTCCTCGGCAATGTGGACCCCCGTCGTT
TTTATTCTTTCTCCTACGGGCAGGGCAGCCTGGCATCCAACGTAGCATAT
AACGCAGTAATGGATTCCCTCGACTCATGGGGCGACACTATCTTATATCC
ACCTAAGAGTTTGAGTGGCGCTCGCTTCGATCATCATCGATTGAGTGCCC
TTTCTTATAGCGCCTACCCTGGCGACGATGAGGAGGACGGTATCTCGCTG
TGGGAGGGGAACTGGGGAAGGCAGCGTCTGGAACAACGGTTGCCGCACGA
AGAGTGGGAAAAATTAAAAGAAGAAAATCATCGGCTGGCTGTGGGAGGAG
TATGA
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Synonyms
Publications