NO27G00240, NO27G00240 (gene) Nannochloropsis oceanica

Overview
NameNO27G00240
Unique NameNO27G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2344
Alignment locationchr27:85293..87636 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:85293..87636 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO27G00240 vs. NCBI_GenBank
Match: CBN76248.1 (hypothetical protein Esi_0422_0006 [Ectocarpus siliculosus])

HSP 1 Score: 68.2 bits (165), Expect = 5.700e-8
Identity = 48/134 (35.82%), Postives = 64/134 (47.76%), Query Frame = 0 
Query:  128 AFTAKFVFDTCCCECPFALLEASLRAPLYL-GGGFLLFLRALLTGNHTIE-----ATQWRLWIREGLLFLASSLSLLFP---GLVLY----VYRGFHPEAEEWDLAALPTLLGNVDPRRFYSFSYGQ-GSLASN 248
            AF    +   C CE P A+LE   R PLYL    ++  + ++    H                REGLL LA+SL+L  P      +Y    V R    E   WD+  +PT+LG VDP RF  F++GQ G LA+N
Sbjct:  196 AFVWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVVDRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAAN 329
The following BLAST results are available for this feature:
BLAST of NO27G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76248.15.700e-835.82hypothetical protein Esi_0422_0006 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00240.1NO27G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00240.1NO27G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00240 ID=NO27G00240|Name=NO27G00240|organism=Nannochloropsis oceanica|type=gene|length=2344bp
ATGCCAGGTAACGCCTCATACGGGAAGACCTGGGTTGGAGTAAAGATGCC
TCGGCGCACGAGCCGCATTCCCGCCAGCGAAGAGATTCAAGCAGCCTCCG
CCGACACGGAAGCTATGGCTGAGACGGGTGCTGCAGAGACAGAGGTTGAT
TCATCCAGgttggttcacacatcagtggttgttatgataacagggatagt
atgcaggccttaagagttccaccgctcacccctgcccccccctccgcccc
caaactcccttcctctttctcagTGAATGGACCCTGGAGTACGACCGCAA
GACGGGTCACTTTTATCATTTTAATACTCGCACGGGGGAAAGCGAGTGGG
TGGAGGAAGAGGAAGAAGAGGATGGGAAAGAGGAAGAGGAAGGGGTAGAA
ACTGACTCCGGACAGGGACGGACGGTGGGAGAGGGAAAAGAGAGGAGGGG
AAGGGAGAGAGAGGAGGTGGTGGGATCTGAGCGGGCATACCCACTGGCAT
TTACAGgtaagaatatgcaaagaaagagaaggagggaggaaaggagggcg
ggaaagaggaaggaagacagagagagatgtaaaagtggaacacggttttc
aatgagggcaaggcggtcggtcaggttcctcctctttttttgttttccgt
acaagtgcgccttcctcattctcttctccctccctccttccctccctccc
ttctcccctttctccgagcagCCAAGTTCGTCTTCGACACTTGTTGCTGT
GAATGTCCTTTTGCATTGCTGGAGGCAAGCCTGCGTGCCCCACgtacgta
tgtagggagggaggggggtagggagggaaggagggagagggattaagatg
ctgaatcaagagatacagccttgtaaagatttccacaaatgaggtatgca
catcacactcatccctcactccccctctttccttcccttcctgcctgcct
gtctctctcccttcctccctccctccttcagTGTACCTAGGAGGAGGCTT
CCTTCTCTTCCTTCGCGCACTTCTGACGGGCAATCATACTATCGAAGCAA
CGCAATGGAGGCTGTGGATACGGGAAGgtatggaggggttatagacggag
ggagggagggagggaggaaaggaggactacattcttttcatcaatgctga
tctcgctgtttccgtgtcgctccctccctccctttcgcccctccgcagGC
CTCCTCTTTCTCGCCTCCTCCCTCTCCCTCCTTTTCCCCGGCCTAGTCCT
CTATGTCTACCGGGGGTTTCACCCTGAAGCAGAGGAGTGGGACTTGGCTG
gtagggagggggggagggagggagggaggaaggaaagaggggggtgggga
agggtggacggtcaagcatcgcgtcacacacacacacatacacacacagc
atcaaggtgaagagaatggcttggaactacgccccccgcttaatattatc
ttcaaacctgcccttcttccctccctccctccctccctccctccctccag
CCCTCCCCACCCTCCTCGGCAATGTGGACCCCCGTCGTTTTTATTCTTTC
TCCTACGGGCAGGGCAGCCTGGCATCCAACGTAGCATATAACGCAGTAAT
GGgtaagacctgaaggaggaagggagggagggagggagggagggaaggag
ggtgggtgggtgggagggagggaggggaagaaacaaacattaccttgctc
gttcacgtttctttttcttccctctctttctttctctctcccttcccccc
tcttaccttccttctctccattcctttctctctccttttgtccctcttac
tccttccctcccttcgtgtccctctctccttcctcctcttccgtagATTC
CCTCGACTCATGGGGCGACACTATCTTATATCCACCTAAGAGTTTGAGTG
GCGCTCGCTTCGgtaaggaagagaggaggggacggaggaggggacggagg
gagagcatagaggaagagatagagaaaaggagaagaaaggagtgaagggg
tggagggagggaagaagggagggagggagggagggagggagggagggagg
gagggaggggaaaagtgaatacacagatcaaaaagctgttctttgttaag
caagctcatatactcacgcaccaaaaattgttcattccctttcactgcaa
tcatcaaatgaatcgtagATCATCATCGATTGAGTGCCCTTTCTTATAGC
GCCTACCCTGGCGACGATGAGGAGGACGGTATCTCGCTGTGGGAGGGGAA
CTGGGGAAGGCAGCGTCTGGAACAACGGTTGCCGCACGAAGAGTGGGAAA
AATTAAAAGAAGAAAATCATCGGCTGGCTGTGGGAGGAGTATGA
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protein sequence of NO27G00240.1

>NO27G00240.1-protein ID=NO27G00240.1-protein|Name=NO27G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MPGNASYGKTWVGVKMPRRTSRIPASEEIQAASADTEAMAETGAAETEVD
SSSEWTLEYDRKTGHFYHFNTRTGESEWVEEEEEEDGKEEEEGVETDSGQ
GRTVGEGKERRGREREEVVGSERAYPLAFTAKFVFDTCCCECPFALLEAS
LRAPLYLGGGFLLFLRALLTGNHTIEATQWRLWIREGLLFLASSLSLLFP
GLVLYVYRGFHPEAEEWDLAALPTLLGNVDPRRFYSFSYGQGSLASNVAY
NAVMDSLDSWGDTILYPPKSLSGARFDHHRLSALSYSAYPGDDEEDGISL
WEGNWGRQRLEQRLPHEEWEKLKEENHRLAVGGV*
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Synonyms
Publications