NO26G00290.1, NO26G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00290.1
Unique NameNO26G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length892
Alignment locationchr26:96286..97734 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:96286..97734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00290.1 vs.
Match: EWM23067.1 (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 2.400e-34
Identity = 77/114 (67.54%), Postives = 91/114 (79.82%), Query Frame = 0 
Query:   85 YAGFCSKPKDGQDGLSPHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAER 199
            +A FCS+ K   D   P + A +T ++SPS  S S  P   D+PGVH+A KRLAIVYTCKVC+TRS K FSQ+AYDHG+VLVRCPGCDNLHLIVDRLGWFEDGGTD++KILAE+
Sbjct:   79 HASFCSQ-KTSDDNRGPGARAETT-STSPSPPSTSATPT--DVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188
The following BLAST results are available for this feature:
BLAST of NO26G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23067.12.400e-3467.54zinc finger protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00290NO26G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00290.1NO26G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00290.1.cds1NO26G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00290.1.cds2NO26G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00290.1.cds3NO26G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00290.1.cds4NO26G00290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00290.1 ID=NO26G00290.1|Name=NO26G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=892bp
ATGTATACCACGCACAGCGAAAGGATGCCTTGGATACTGCTGCCACTGCG
ACGGACCGCCTGCGCTGGGGCTGGGCGCATGGTATGTGCCGGTCAAGCGT
TATTGCCTACCCACCCTCCACCCCGACAGCACCACATCGTCCTTCCTCCA
TGCCTCCCTTACCCGTACATCACTTCCTTTACTGCCGCCACGGAGGCGTC
AACGAGAAACAGTATTAGGAGAAAAAGATATCTGCCCACGCAGCAGCAGC
AATACGCTGGCTTCTGCTCCAAGCCAAAAGATGGGCAGGACGGCCTCTCC
CCTCATTCCACAGCTTCCTCCACCCCGGCCTCCTCCCCTTCCACCTCCTC
CGGCTCACCTCAGCCGCCGCGAATCGACATACCTGGCGTGCACTACGCCG
ACAAACGCCTTGCTATCGTCTACACCTGTAAGGTGTGTGAGACTCGTTCC
GCCAAAGCCTTTTCTCAACAAGCCTACGACCATGGCATCGTCCTCGTGCG
TTGCCCCGGCTGCGACAACCTTCACCTGATCGTCGACAGGCTGGGATGGT
TCGAAGACGGCGGCACGGACGTCAAAAAGATTTTGGCGGAAAGGGGCGAG
TCTGTGCTGGCAGTCACGGACGACAACGTGCTCTCCCTTACTCCCAAGGA
CATCCTGGGAGGGGGGGGGAGGTAGGGGGTGATGAAGGGAGGGAGGAGGG
GAAGGAGAAAAAGTGAAGGAGAATTGGAGGAGGGAAAGAAAGAAGGAAGG
AAGGAAGGAAGGAATGAAGGAAGGAAGGAAGGAAGGGTGGGAAGTGGAGC
GGAGGAAGGGGAATTTGGTGCGCCGACAAGAGGAAAATATGTGGGTGAAA
GAGTGCTCCATTGGAAAAGGAAAAAGCGACAATCTGTAAATG
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protein sequence of NO26G00290.1

>NO26G00290.1-protein ID=NO26G00290.1-protein|Name=NO26G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MYTTHSERMPWILLPLRRTACAGAGRMVCAGQALLPTHPPPRQHHIVLPP
CLPYPYITSFTAATEASTRNSIRRKRYLPTQQQQYAGFCSKPKDGQDGLS
PHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRS
AKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGE
SVLAVTDDNVLSLTPKDILGGGGR*
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mRNA from alignment at chr26:96286..97734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00290.1 ID=NO26G00290.1|Name=NO26G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at chr26:96286..97734- (Nannochloropsis oceanica)
ATGTATACCACGCACAGCGAAAGGATGCCTTGGATACTGCTGCCACTGCG
ACGGACCGCCTGCGCTGGGGCTGGGCGCATGGTATGTGCCGGTCAAGCGT
TATTGCCTACCCACCCTCCACCCCGACAGCACCACATCGTCCTTCCTCCA
TGCCTCCCTTACCCGTACATCACTTCCTTTACTGCCGCCACGGAGGCGTC
AACGAGAAACAGTATTAGGAGAAAAAGATATCTGCCCACGCAGCAGCAGC
AATACGCTGGCTTCTGCTCCAAGCCAAAAGATGGGCAGGACGGCCTCTCC
CCTCATTCCACAGCTTCCTCCACCCCGGCCTCCTCCCCTTCCACCTCCTC
CGGCTCACCTCAGCCGCCGCGAATCGACATACCTGGCGTGCACTACGCCG
ACAAACGCCTTGCTATCGTCTACACCTGTAAGGTACGTTCCTCCGTCCCT
CTCCCCTTCTATTTCTGCCTTCCTCCTTGTACACCCAACCCTCCCTCCCT
CCCTTCCTCCCCCCCTTCAGGTGTGTGAGACTCGTTCCGCCAAAGCCTTT
TCTCAACAAGCCTACGACCATGGCATCGTCCTCGTGCGTTGCCCCGGCTG
CGACAACCTTCACCTGATCGTCGACAGGTACGCTTCCTCCCCTCCTCTTT
CCCTCCCGTTCTCCCTTCTTTCTTCCCTTCTCCTCCCCCCCCACAGCCAG
AATTTCCCTATACTTCTCATAACATCCTCGGTCAGTGTGTCTGATCGATC
TGTCTCAGCTTTTCTTTCTAATCCGTGTCAATTACCCCTTGCGTTCTTCC
TTAATTTCCCTCCTTCCTCCCCTCCCTCCCTCGCTCCCCCCCTCGCTCCC
TCCCTCGCTCCCCCCCTCGCTCCCTCCCTCGCTCCCCCCCTCGCTCCCTC
CCTCGCTTCCTCCTTTCTTAGGCTGGGATGGTTCGAAGACGGCGGCACGG
ACGTCAAAAAGATTTTGGCGGAAAGGGTAGGAAGGAAGGAAGGAAGGGAG
GGAGGGAGGGAGGAAGGGAGGGAGGGATGGAGGGAGGGATGGCGGGAGGA
AGGAGGGGATGAGGGCCTCGTGTTGAGGATGTGTCTCACCTATCCTCCCT
CCTTCCCTTCCCCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCA
GGGCGAGTCTGTGCTGGCAGTCACGGACGACAACGTGCTCTCCCTTACTC
CCAAGGACATCCTGGGAGGGGGGGGGAGGTAGGGGGTGATGAAGGGAGGG
AGGAGGGGAAGGAGAAAAAGTGAAGGAGAATTGGAGGAGGGAAAGAAAGA
AGGAAGGAAGGAAGGAAGGAATGAAGGAAGGAAGGAAGGAAGGGTGGGAA
GTGGAGCGGAGGAAGGGGAATTTGGTGCGCCGACAAGAGGAAAATATGTG
GGTGAAAGAGTGCTCCATTGGAAAAGGAAAAAGCGACAATCTGTAAATG
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Coding sequence (CDS) from alignment at chr26:96286..97734-

>NO26G00290.1 ID=NO26G00290.1|Name=NO26G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr26:96286..97734- (Nannochloropsis oceanica)
ATGTATACCACGCACAGCGAAAGGATGCCTTGGATACTGCTGCCACTGCG
ACGGACCGCCTGCGCTGGGGCTGGGCGCATGGTATGTGCCGGTCAAGCGT
TATTGCCTACCCACCCTCCACCCCGACAGCACCACATCGTCCTTCCTCCA
TGCCTCCCTTACCCGTACATCACTTCCTTTACTGCCGCCACGGAGGCGTC
AACGAGAAACAGTATTAGGAGAAAAAGATATCTGCCCACGCAGCAGCAGC
AATACGCTGGCTTCTGCTCCAAGCCAAAAGATGGGCAGGACGGCCTCTCC
CCTCATTCCACAGCTTCCTCCACCCCGGCCTCCTCCCCTTCCACCTCCTC
CGGCTCACCTCAGCCGCCGCGAATCGACATACCTGGCGTGCACTACGCCG
ACAAACGCCTTGCTATCGTCTACACCTGTAAGGTGTGTGAGACTCGTTCC
GCCAAAGCCTTTTCTCAACAAGCCTACGACCATGGCATCGTCCTCGTGCG
TTGCCCCGGCTGCGACAACCTTCACCTGATCGTCGACAGGCTGGGATGGT
TCGAAGACGGCGGCACGGACGTCAAAAAGATTTTGGCGGAAAGGGGCGAG
TCTGTGCTGGCAGTCACGGACGACAACGTGCTCTCCCTTACTCCCAAGGA
CATCCTGGGAGGGGGGGGGAGGTAG
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Synonyms
Publications