NO26G00290, NO26G00290 (gene) Nannochloropsis oceanica

Overview
NameNO26G00290
Unique NameNO26G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1449
Alignment locationchr26:96286..97734 -

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Properties
Property NameValue
DescriptionZinc finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:96286..97734 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024158Mt_import_TIM15
IPR007853Znf_DNL-typ
Homology
BLAST of NO26G00290 vs. NCBI_GenBank
Match: EWM23067.1 (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 141.4 bits (355), Expect = 3.500e-30
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 0
Query:   85 YAGFCSKPKDGQDGLSPHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAER 199
            +A FCS+ K   D   P + A                    D+PGVH+A KRLAIVYTCKVC+TRS K FSQ+AYDHG+VLVRCPGCDNLHLIVDRLGWFEDGGTD++KILAE+
Sbjct:   79 HASFCSQ-KTSDDNRGPGARAEXXXXXXXXXXXXXTP---TDVPGVHHATKRLAIVYTCKVCQTRSVKGFSQEAYDHGVVLVRCPGCDNLHLIVDRLGWFEDGGTDIQKILAEK 188          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: XP_002908206.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61289.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 131.3 bits (329), Expect = 3.700e-27
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 0
Query:   89 CSKPKDGQDGLSPHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILGG 222
            C   + G D  +P S A S+ +++ +T   S        PGV    ++  ++YTC VCETRSAK  S+ AY +G+VLVRCPGC+N HL+ DRLGWFED   DV+ +L  +GESV  VT +NVL LT  DILGG
Sbjct:   49 CFVTESGNDDSAPVSPAISSESTASATECSS-------APGVESPGEKFVMIYTCSVCETRSAKTISKHAYYNGVVLVRCPGCENQHLVADRLGWFEDDSVDVESLLKHKGESVRFVTAENVLELTENDILGG 174          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: XP_008890456.1 (hypothetical protein PPTG_00743 [Phytophthora parasitica INRA-310] >ETI56701.1 hypothetical protein F443_00878 [Phytophthora parasitica P1569] >ETK96456.1 hypothetical protein L915_00819 [Phytophthora parasitica] >ETL49812.1 hypothetical protein L916_00809 [Phytophthora parasitica] >ETM02877.1 hypothetical protein L917_00777 [Phytophthora parasitica] >ETM56177.1 hypothetical protein L914_00807 [Phytophthora parasitica] >ETN24391.1 hypothetical protein PPTG_00743 [Phytophthora parasitica INRA-310] >ETO85366.1 hypothetical protein F444_00886 [Phytophthora parasitica P1976] >ETP26462.1 hypothetical protein F441_00854 [Phytophthora parasitica CJ01A1] >ETP54459.1 hypothetical protein F442_00832 [Phytophthora parasitica P10297] >KUF77475.1 DNL-type zinc finger protein [Phytophthora nicotianae] >KUF89378.1 DNL-type zinc finger protein [Phytophthora nicotianae] >KUF98894.1 Flagellar WD repeat-containing protein Pf20 [Phytophthora nicotianae])

HSP 1 Score: 131.0 bits (328), Expect = 4.800e-27
Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 0
Query:   61 TAATEASTRNSIRRKRYLPTQQQQYAGFCSKPKDGQDGLSPHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            TA++ AS    + R  + P        F ++  D +  +SP  T SS    S +  SG+        PGV    ++  +VYTC VCETRSAK  S+ AY +G+VLVRCPGC+NLHL+ DRLGWFED  TDV+ +L ++GESV  VT +NVL LT  DILG
Sbjct:   33 TASSSASHLLHVSRASF-PHLHSHSRCFATQSGDIEPPVSP--TTSSESTVSATEYSGA--------PGVESPGEKFVMVYTCSVCETRSAKTISKHAYYNGVVLVRCPGCENLHLVADRLGWFEDDSTDVESLLKQKGESVRFVTGENVLELTENDILG 181          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: OWZ07118.1 (hypothetical protein PHMEG_00020536 [Phytophthora megakarya])

HSP 1 Score: 129.8 bits (325), Expect = 1.100e-26
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 0
Query:  102 HSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            + T  S  A S ST S S        PGV    ++  +VYTC VCETRSAK  S+ AY  G+VLVRCPGC+NLHL+ DRLGWFED GTDV+ +L ++GE V  VT ++VL LT  DILG
Sbjct:   62 NDTPPSPVAPSDSTDSASEHS---GAPGVESPGEKFVMVYTCNVCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLGWFEDDGTDVESLLQQKGEKVRFVTAEDVLELTENDILG 177          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: XP_009523416.1 (hypothetical protein PHYSODRAFT_259700 [Phytophthora sojae] >EGZ20699.1 hypothetical protein PHYSODRAFT_259700 [Phytophthora sojae])

HSP 1 Score: 127.5 bits (319), Expect = 5.300e-26
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 0
Query:  128 PGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            PGV     +  +VYTC VCETRSAK  S+ AY  G+VLVRCPGC+NLHL+ DRLGWFED  TDV+ +L ++GE V  V  +NVL LT  DILG
Sbjct:   92 PGVESPGDKFVMVYTCSVCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLGWFEDDSTDVESLLQQKGEKVRFVIGENVLELTENDILG 184          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: POM72000.1 (DNL zinc finger domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 127.5 bits (319), Expect = 5.300e-26
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 0
Query:  103 STASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            S  +  P+S+ +  SG+        PGV    ++  +VYTC VCETRSAK  S+ AY  G+VLVRCPGC+NLHL+ DRLGWFED GTDV+ +L ++GE V  VT ++VL LT  DILG
Sbjct:   52 SDDNDAPSSADTEYSGA--------PGVESPGEKFVMVYTCNVCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLGWFEDDGTDVETLLKQKGEKVRFVTGEDVLELTENDILG 161          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: OQR95876.1 (hypothetical protein THRCLA_22059 [Thraustotheca clavata])

HSP 1 Score: 125.2 bits (313), Expect = 2.600e-25
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 0
Query:  101 PHSTASSTPASS--PSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            PH+       SS  P  S G+P    ++ PGV    ++  ++YTC VC+TR+AK  S+QAY HG+VLVRCP C+NLHLI DRLGWFED   DV++IL  +G     VT DN+L LT KDILG
Sbjct:   25 PHAVLLHRSFSSLTPPPSDGAPS-GILNAPGVESKGEKFVMLYTCTVCDTRAAKTISKQAYYHGVVLVRCPKCENLHLIADRLGWFEDDSYDVEQILKAKGGQAKIVTGDNILELTEKDILG 145          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: XP_009829272.1 (hypothetical protein H257_05944 [Aphanomyces astaci] >ETV81414.1 hypothetical protein H257_05944 [Aphanomyces astaci])

HSP 1 Score: 124.4 bits (311), Expect = 4.500e-25
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 0
Query:  103 STASSTPASSPSTSSGSPQPPRIDIPGVHY-ADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            S +++TP S P  SSGS      DIPG    +  +  +VYTC VC+TR+AK  S+ AY +G+VL+RCP C NLHLI DRLGWFEDGG DV+++LA +G +   VT DN+L LT  D+LG
Sbjct:   64 SFSTTTPPSDP-PSSGS------DIPGATLTSGDKFVMVYTCTVCDTRAAKTISKHAYYNGVVLIRCPTCQNLHLIADRLGWFEDGGYDVQEVLAAKGGNARIVTHDNILELTEADVLG 175          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: XP_008875659.1 (hypothetical protein H310_10944 [Aphanomyces invadans] >ETV95466.1 hypothetical protein H310_10944 [Aphanomyces invadans])

HSP 1 Score: 124.4 bits (311), Expect = 4.500e-25
Identity = 60/116 (51.72%), Postives = 78/116 (67.24%), Query Frame = 0
Query:  106 SSTPASSPSTSSGSPQPPRIDIPGVHY-ADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            S+TP + PS     P  P  DIPG    +  +  +VYTC VC+TR+AK  S+ AY +G+VL+RCP C NLHLI DRLGWFED G DV+++LA +G +   VT DN+L LT  D+LG
Sbjct:   58 STTPPAPPS----DPASPGTDIPGATLTSGDKFVMVYTCTVCDTRAAKTISKHAYYNGVVLIRCPTCQNLHLIADRLGWFEDDGFDVQEVLAAKGGNARIVTHDNILELTEDDVLG 169          
BLAST of NO26G00290 vs. NCBI_GenBank
Match: XP_024573321.1 (zinc finger [Plasmopara halstedii] >CEG36952.1 zinc finger [Plasmopara halstedii])

HSP 1 Score: 122.9 bits (307), Expect = 1.300e-24
Identity = 61/121 (50.41%), Postives = 78/121 (64.46%), Query Frame = 0
Query:  100 SPHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRSAKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGESVLAVTDDNVLSLTPKDILG 221
            S H   S+    SP T + +       +PGV     +  +VYTC VCETRSAK  S+ AY  G+VLVRCPGC+NLHLI DRLGWFED  TDV+ +L ++G+ V  +T+ +VL LT  DILG
Sbjct:   48 STHHCFSTQRDDSPVTEATTIS----SVPGVESPGDKFVMVYTCSVCETRSAKTISKHAYYKGVVLVRCPGCENLHLIADRLGWFEDDATDVESLLKQKGKRVRFITEKDVLELTENDILG 164          
The following BLAST results are available for this feature:
BLAST of NO26G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23067.13.500e-3061.40zinc finger protein [Nannochloropsis gaditana][more]
XP_002908206.13.700e-2748.87conserved hypothetical protein [Phytophthora infes... [more]
XP_008890456.14.800e-2746.25hypothetical protein PPTG_00743 [Phytophthora para... [more]
OWZ07118.11.100e-2654.62hypothetical protein PHMEG_00020536 [Phytophthora ... [more]
XP_009523416.15.300e-2660.22hypothetical protein PHYSODRAFT_259700 [Phytophtho... [more]
POM72000.15.300e-2652.54DNL zinc finger domain containing hypothetical pro... [more]
OQR95876.12.600e-2551.64hypothetical protein THRCLA_22059 [Thraustotheca c... [more]
XP_009829272.14.500e-2552.94hypothetical protein H257_05944 [Aphanomyces astac... [more]
XP_008875659.14.500e-2551.72hypothetical protein H310_10944 [Aphanomyces invad... [more]
XP_024573321.11.300e-2450.41zinc finger [Plasmopara halstedii] >CEG36952.1 zin... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00290.1NO26G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101466g2gene7385Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00290.1NO26G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00290 ID=NO26G00290|Name=NO26G00290|organism=Nannochloropsis oceanica|type=gene|length=1449bp
ATGTATACCACGCACAGCGAAAGGATGCCTTGGATACTGCTGCCACTGCG
ACGGACCGCCTGCGCTGGGGCTGGGCGCATGGTATGTGCCGGTCAAGCGT
TATTGCCTACCCACCCTCCACCCCGACAGCACCACATCGTCCTTCCTCCA
TGCCTCCCTTACCCGTACATCACTTCCTTTACTGCCGCCACGGAGGCGTC
AACGAGAAACAGTATTAGGAGAAAAAGATATCTGCCCACGCAGCAGCAGC
AATACGCTGGCTTCTGCTCCAAGCCAAAAGATGGGCAGGACGGCCTCTCC
CCTCATTCCACAGCTTCCTCCACCCCGGCCTCCTCCCCTTCCACCTCCTC
CGGCTCACCTCAGCCGCCGCGAATCGACATACCTGGCGTGCACTACGCCG
ACAAACGCCTTGCTATCGTCTACACCTGTAAGgtacgttcctccgtccct
ctccccttctatttctgccttcctccttgtacacccaaccctccctccct
cccttcctcccccccttcagGTGTGTGAGACTCGTTCCGCCAAAGCCTTT
TCTCAACAAGCCTACGACCATGGCATCGTCCTCGTGCGTTGCCCCGGCTG
CGACAACCTTCACCTGATCGTCGACAGgtacgcttcctcccctcctcttt
ccctcccgttctcccttctttcttcccttctcctccccccccacagccag
aatttccctatacttctcataacatcctcggtcagtgtgtctgatcgatc
tgtctcagcttttctttctaatccgtgtcaattaccccttgcgttcttcc
ttaatttccctccttcctcccctccctccctcgctccccccctcgctccc
tccctcgctccccccctcgctccctccctcgctccccccctcgctccctc
cctcgcttcctcctttcttagGCTGGGATGGTTCGAAGACGGCGGCACGG
ACGTCAAAAAGATTTTGGCGGAAAGGgtaggaaggaaggaaggaagggag
ggagggagggaggaagggagggagggatggagggagggatggcgggagga
aggaggggatgagggcctcgtgttgaggatgtgtctcacctatcctccct
ccttcccttcccccttccctccctccttccctccctccttccctccctca
gGGCGAGTCTGTGCTGGCAGTCACGGACGACAACGTGCTCTCCCTTACTC
CCAAGGACATCCTGGGAGGGGGGGGGAGGTAGGGGGTGATGAAGGGAGGG
AGGAGGGGAAGGAGAAAAAGTGAAGGAGAATTGGAGGAGGGAAAGAAAGA
AGGAAGGAAGGAAGGAAGGAATGAAGGAAGGAAGGAAGGAAGGGTGGGAA
GTGGAGCGGAGGAAGGGGAATTTGGTGCGCCGACAAGAGGAAAATATGTG
GGTGAAAGAGTGCTCCATTGGAAAAGGAAAAAGCGACAATCTGTAAATG
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protein sequence of NO26G00290.1

>NO26G00290.1-protein ID=NO26G00290.1-protein|Name=NO26G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MYTTHSERMPWILLPLRRTACAGAGRMVCAGQALLPTHPPPRQHHIVLPP
CLPYPYITSFTAATEASTRNSIRRKRYLPTQQQQYAGFCSKPKDGQDGLS
PHSTASSTPASSPSTSSGSPQPPRIDIPGVHYADKRLAIVYTCKVCETRS
AKAFSQQAYDHGIVLVRCPGCDNLHLIVDRLGWFEDGGTDVKKILAERGE
SVLAVTDDNVLSLTPKDILGGGGR*
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Synonyms
Publications