NO26G00250.1, NO26G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00250.1
Unique NameNO26G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2668
Alignment locationchr26:86826..90702 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:86826..90702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00250.1 vs.
Match: GAX11123.1 (diphthine-ammonia ligase [Fistulifera solaris])

HSP 1 Score: 112.8 bits (281), Expect = 1.800e-21
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:  157 GGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAEL 248
            G G+  + F GG  NFLSIYN+++T RILLSWFPQ       +P++ +T+PF N+FRG++PPI GLD SP+ AFFLL+ +TNAT  +G+ L
Sbjct:   67 GNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFRGVVPPIFGLDFSPILAFFLLNVVTNATAAVGSTL 157
The following BLAST results are available for this feature:
BLAST of NO26G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX11123.11.800e-2153.85diphthine-ammonia ligase [Fistulifera solaris][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00250NO26G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00250.1NO26G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00250.1.cds1NO26G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00250.1.cds2NO26G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00250.1.cds3NO26G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00250.1.cds4NO26G00250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00250.1.cds5NO26G00250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00250.1 ID=NO26G00250.1|Name=NO26G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2668bp
CTGCTGTTGCTGCTGTTGCTGCTGCTACTATCACTTCTGCTGTGGCTGCT
GCTTCCTCCATTCCCCCCTCCTCCTACTACTCCTCGTCCAACCAACATCA
TCCGCAACGCCTGCTGCTTCTCCGAATCCCTCCATCCCTCCTTCTTCCCC
TCCCTCCCTCCGGCCATCATCCGTCGAGCCGATGGCGAAGAGGGGGAGGA
TAACGAGGAGGAAGAGAATGAGGAGGAGGAGGCGGTGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGCAGAGGAGGAGGAGTCCCCGAGGGAGGAAAGG
AAGGAGGGCGCTTCTCCACACATGTCTACGCCGTCACTAAGCCCAGGCTG
GTCCAAAAGGGAGTGAGTATGGAGGAAAGAGGGAGGGAGGAAGGAAGGGT
TGACAGTGCTCGTGCTTTCGACGGCTGGAGGGGTGTGAGGAAGGAGGGTG
GAGAGATGGGGAGGGGAGGAAAAAGCACGGCGAGTAGAAGGGAGGGGCGA
AGACGAGGAGCAAGAAGAAGGAGGTGAGGAGACTTTCTTGGGTGTTTCTC
TCGCGAGCGGGGGGGAGGGGTGGGAGGAGGTGGAGAGAGTGGAGGAGGAG
GAGGAGAAGGAGGAGGAAGTAGGGGAGGAGTAGTGTGCCGTCGTGGCCCT
CTTGACCGCAGAGTGGTGGAGAGGGTGCTCATATCCATGCTGCTGGTGCT
TCATGGCATAGCGCCGTGTAGAAGGGTGATGATTGAATGTAAAACCACTC
CCGCCATGGCAACAGTCGTCCATCGCTCTTGATCTTACGCCTGGTAGTGC
TGATAGTGCTGTTGAAGGAGAGGGCAGGCGGGCCCTCTCGCTTTGAGTGG
TCGGATCAAAATTGCGGTAGTTGTAGTTCCTATGATGAGAAATGTGGACG
AATGGTAGGGTAAGTGTGAGGTGCTTGGGAAATTCGAAAGTTTGGGGGTG
GGACAGGGGGAGGGGGTGAATGGGGAAGGATTCACACAGCCAGCCAGACA
AGGGTAGTGGTTCCAGCTTCATGCCCCTTCGACACCATCCACAGGGAAAC
AAGAAGCCGTAAGTGCGCCCATCGCGTCGCAGCATACACACGTCCGTGCT
CTCCCTACCTACAACACGATGCCCAAATGAGTTGGGTTGCGCTCTTGTTG
ATAAGATGACATACGAGCGAGCTGAGCGCGCACAGCCAGCAAGCAATGTA
TAAGACAACAATCCAGCAGACAATGTCATTACCATACGCAAGTCACCACA
AATTGGAGATGCAATTACCCCATCCACCTGCAACACGTGTCTGAGAAAGC
ATGGAACACGACTCGTCGGGATAGGTGGCGCATGCGCACTACTTTGACAG
GCAACTTGCTGCCGTTTCCTCTCGACAGAGAAGACGCTCTTCCAGAGACA
CGTTGAACCTGCCGGGACGGCAAGGTGATGGGTGACAGAGTGCCAAGCCA
CCAATCGAACGCAGCAAATGGGCTTTGCGTGCAAAAGATGAAGAACCATA
CAATAGGGTAAGCCATTTCCATGGTGACTCAGCCACGGAAGTTTGTGCGG
GTGGCGATGTCGATGACTACGACGACGGGCAGCTCGAGGCCGAGGGGATC
GACAACTGACATGCAAAGCCGCTGCAACGGCGTCAACCAACTCGGGGTCG
CCGTAGCTCGTCGTCCCCCCTCGTCATCTGTCCTTGGCCGCCTCCTCATC
AATATGATGATGATGCTGTCAAAACGTCCCGCCTCTTCTCCCTACTCCTC
CACTCTCCTCGTCCTCGTGGCCACCCTCCTCTCCATTCTTGTGTCCTACT
CCTCCGCCGCCGTCCTCCCTTCTGCTTCTTCATCCTCCCGTCTCAGCAGC
AGCAGCAGCAACAGCAACAGGTGGTTCACTCCCTCCTCCGCCTCCTTCTT
GCAACGTCATCGGTCCCCCTTGCAAGCCATGGCGGGGGCACGAAGAGGCA
ACTATCACGTTCGCAGCGGACGATGCGCCGCTCAGTTGGGAGGTGGTGTG
GTGGGCGAAACGTTCTTTGGAGGCCTGCACAACTTCCTGTCTATCTACAA
TATCGTGCTCACGGGGCGTATCCTCTTGTCGTGGTTTCCTCAGGTGGCCC
GGCAGCCCGTATTCGAGCCCCTCTTCGTAGTGACTAATCCCTTCTTCAAC
ATTTTCCGCGGCTTGATTCCTCCCATTGCCGGTCTGGACCTCTCGCCTCT
CCCTGCCTTCTTCCTCCTCTCCTTCCTCACCAACGCCACGGAGACGATGG
GCGCCGAGTTGGCCCCTAACGGTCCTGGCCATCGGACCCTGAACAGTCGC
ATGATTGCCACCTGGAGGGATGTGATGAAGAACAAGCAAAACCTCCGCTT
GCCCCGTCTGCCCTCCTTCCCTGCCCCCCTCCCTTCCTTGGGAGCGAGGA
GAAGCTAGGATTAAAGAGAGTAGGGAAAGAGGAAGGATAAAGAGGAGTGA
GGGAAGGAGGAAAGGTGCACATTTTGCGCGAGGAGAGATGGAGACAGACG
GTGAGAGGGAAGGACTGTCAGGGTTCGCGAAAGAGTAAAGGAAGAGTCAA
AGTCTCTTGTTTATTCCCAAATAGAATGAATGTGATAGGAAGTGGGCTCA
CTAGTAAAGGTGTAAAGAGATGTCTTTGAGTAGCCCTGGGCAACTGTCTT
TCGTGTAGGGAGGGAAGG
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protein sequence of NO26G00250.1

>NO26G00250.1-protein ID=NO26G00250.1-protein|Name=NO26G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MVTQPRKFVRVAMSMTTTTGSSRPRGSTTDMQSRCNGVNQLGVAVARRPP
SSSVLGRLLINMMMMLSKRPASSPYSSTLLVLVATLLSILVSYSSAAVLP
SASSSSRLSSSSSNSNRWFTPSSASFLQRHRSPLQAMAGARRGNYHVRSG
RCAAQLGGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEP
LFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAPN
GPGHRTLNSRMIATWRDVMKNKQNLRLPRLPSFPAPLPSLGARRS*
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mRNA from alignment at chr26:86826..90702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00250.1 ID=NO26G00250.1|Name=NO26G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3877bp|location=Sequence derived from alignment at chr26:86826..90702- (Nannochloropsis oceanica)
CTGCTGTTGCTGCTGTTGCTGCTGCTACTATCACTTCTGCTGTGGCTGCT
GCTTCCTCCATTCCCCCCTCCTCCTACTACTCCTCGTCCAACCAACATCA
TCCGCAACGCCTGCTGCTTCTCCGAATCCCTCCATCCCTCCTTCTTCCCC
TCCCTCCCTCCGGCCATCATCCGTCGAGCCGATGGCGAAGAGGGGGAGGA
TAACGAGGAGGAAGAGAATGAGGAGGAGGAGGCGGTGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGCAGAGGAGGAGGAGTCCCCGAGGGAGGAAAGG
AAGGAGGGCGCTTCTCCACACATGTCTACGCCGTCACTAAGCCCAGGCTG
GTCCAAAAGGGAGTGAGTATGGAGGAAAGAGGGAGGGAGGAAGGAAGGGT
TGACAGTGCTCGTGCTTTCGACGGCTGGAGGGGTGTGAGGAAGGAGGGTG
GAGAGATGGGGAGGGGAGGAAAAAGCACGGCGAGTAGAAGGGAGGGGCGA
AGACGAGGAGCAAGAAGAAGGAGGTGAGGAGACTTTCTTGGGTGTTTCTC
TCGCGAGCGGGGGGGAGGGGTGGGAGGAGGTGGAGAGAGTGGAGGAGGAG
GAGGAGAAGGAGGAGGAAGTAGGGGAGGAGTAGTGTGCCGTCGTGGCCCT
CTTGACCGCAGAGTGGTGGAGAGGGTGCTCATATCCATGCTGCTGGTGCT
TCATGGCATAGCGCCGTGTAGAAGGGTGATGATTGAATGTAAAACCACTC
CCGCCATGGCAACAGTCGTCCATCGCTCTTGATCTTACGCCTGGTAGTGC
TGATAGTGCTGTTGAAGGAGAGGGCAGGCGGGCCCTCTCGCTTTGAGTGG
TCGGATCAAAATTGCGGTAGTTGTAGTTCCTATGATGAGAAATGTGGACG
AATGGTAGGGTAAGTGTGAGGTGCTTGGGAAATTCGAAAGTTTGGGGGTG
GGACAGGGGGAGGGGGTGAATGGGGAAGGATTCACACAGCCAGCCAGACA
AGGGTAGTGGTTCCAGCTTCATGCCCCTTCGACACCATCCACAGGGAAAC
AAGAAGCCGTAAGTGCGCCCATCGCGTCGCAGCATACACACGTCCGTGCT
CTCCCTACCTACAACACGATGCCCAAATGAGTTGGGTTGCGCTCTTGTTG
ATAAGATGACATACGAGCGAGCTGAGCGCGCACAGCCAGCAAGCAATGTA
TAAGACAACAATCCAGCAGACAATGTCATTACCATACGCAAGTCACCACA
AATTGGAGATGCAATTACCCCATCCACCTGCAACACGTGTCTGAGAAAGC
ATGGAACACGACTCGTCGGGATAGGTGGCGCATGCGCACTACTTTGACAG
GCAACTTGCTGCCGTTTCCTCTCGACAGAGAAGACGCTCTTCCAGAGACA
CGTTGAACCTGCCGGGACGGCAAGGTGATGGGTGACAGAGTGCCAAGCCA
CCAATCGAACGCAGCAAATGGGCTTTGCGTGCAAAAGATGAAGAACCATA
CAATAGGGTAAGCCATTTCCATGGTGACTCAGCCACGGAAGTTTGTGCGG
GTGGCGATGTCGATGACTACGACGACGGGCAGCTCGAGGCCGAGGGGATC
GACAACTGACATGCAAAGCCGCTGCAACGGCGTCAACCAACTCGGGGTAA
GACACCACTTGCCACTTGCCAGCCCTTCAGCACTGACGTTGAGGTCTTGT
GGCTTTAGTCGCACGTCATCAGGACGTGTTTTTCTTTTCTTTTCATCCTT
TTATTTGGTTCTCTCTTCTGGGTGTCACGCGTGAGCGACTGCATGCGTGG
AACGGTGAGCGATCAAGATATTCGTGCTTTCTAGACCCTCGGTACTCCGC
CCCTACGGAAAATAAGCCGAATCAGATCGAACCACCGCGCCTCTCGCGTC
AGGCCTACTAAATGTATTAACTTTTAACACTGCAGGCATTGTCGCCTCTT
CCCCGCCCCGCCTAACTTCTTCTACTCGTCCCTCCCCTCCCCCCAAACTG
CACTGACGACCAAAACAGGTCGCCGTAGCTCGTCGTCCCCCCTCGTCATC
TGTCCTTGGCCGCCTCCTCATCAATATGATGATGATGCTGTCAAAACGTC
CCGCCTCTTCTCCCTACTCCTCCACTCTCCTCGTCCTCGTGGCCACCCTC
CTCTCCATTCTTGTGTCCTACTCCTCCGCCGCCGTCCTCCCTTCTGCTTC
TTCATCCTCCCGTCTCAGCAGCAGCAGCAGCAACAGCAACAGGTGGTTCA
CTCCCTCCTCCGCCTCCTTCTTGCAACGTCATCGGTCCCCCTTGCAAGCC
ATGGCGGGGGCACGAAGAGGCAACTATCACGTTCGCAGCGGACGATGCGC
CGCTCAGTTGGGTAAGTGATAGCTTAGGATTAAAGAGAAGTAGGAAGGAG
TTAAAAATGAGATTTCAGAATCGGACTCTGAATGTCCCCGCGTGCGAACT
CTTTTGTTGTTGCATTCTTTCACCTGCCACAATGCCATGTCCAGAATACC
CTGACCAGGCCTCTGGAGAAGAGAGACACGTGACTGATGCTGGTGCAAAG
GCACACATCTTCTCGTTTTACCTTCCTCCCCACGCGTTGGGCACCAGCAT
ATGCTTGTGCGGAAGAGAGATAAGGAGAATAAGAATTATATTGTACCAAG
CAATCAAACCATGGTGCGGTGTGGATGAAGGGCAAGGAAGGCATCGGAAG
GGTAGAAGAGAACAGGAGCAGCACGCTTGAAATGAATTGCGGCGTGTGAC
TGTAAAGGGCCAGCGCAATGCACAAAGGCGTAGCTATGCACGCATGTGCA
ACACACCGCTTCCAGACCTCCAACCCTCCCTTCCCTTCCTCTCTTCCCTC
TTCCCTCCCCCCAGGAGGTGGTGTGGTGGGCGAAACGTTCTTTGGAGGCC
TGCACAACTTCCTGTCTATCTACAATATCGTGCTCACGGGGCGTATCCTC
TTGTCGTGGTTTCCTCAGGTACGGCCAGGGAGGGCGGGAATGAGGGCGGG
GAGAAGTGTCGGATGACAGGAAGGAGTGGGAATGGATGCATCTGCTTGTG
GATGGTGGCTCGATCTAAACTCCCCTCCCTCTCTCCCACCCACCCTCAGG
TGGCCCGGCAGCCCGTATTCGAGCCCCTCTTCGTAGTGACTAATCCCTTC
TTCAACATTTTCCGCGGCTTGATTCCTCCCATTGCCGGTCTGGACCTCTC
GCCTCTCCCTGCCTTCTTCCTCCTCTCCTTCCTCACCAACGCCACGGAGA
CGATGGGCGCCGAGTTGGCCCCTAACGGTAAACTTCCCTCCCTTCTTCCT
CCCCTTCCCTCCTTCAGCCATCGGCCACTAGGCTGTAATCAATCATCACC
TGGATGAAGAGCAAGCTCTCCCTGCCTCCTTCCCTCCCTCCCTTCCCTTC
ATTTTCCCACCGCAGAGCAACTCCATTTTGATATACCTACCCGTCCCTCC
CTCCCTCCCTCCCCTCCCTTCCTTCCTCAGGTCCTGGCCATCGGACCCTG
AACAGTCGCATGATTGCCACCTGGAGGGATGTGATGAAGAACAAGCAAAA
CCTCCGCTTGCCCCGTCTGCCCTCCTTCCCTGCCCCCCTCCCTTCCTTGG
GAGCGAGGAGAAGCTAGGATTAAAGAGAGTAGGGAAAGAGGAAGGATAAA
GAGGAGTGAGGGAAGGAGGAAAGGTGCACATTTTGCGCGAGGAGAGATGG
AGACAGACGGTGAGAGGGAAGGACTGTCAGGGTTCGCGAAAGAGTAAAGG
AAGAGTCAAAGTCTCTTGTTTATTCCCAAATAGAATGAATGTGATAGGAA
GTGGGCTCACTAGTAAAGGTGTAAAGAGATGTCTTTGAGTAGCCCTGGGC
AACTGTCTTTCGTGTAGGGAGGGAAGG
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Coding sequence (CDS) from alignment at chr26:86826..90702-

>NO26G00250.1 ID=NO26G00250.1|Name=NO26G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr26:86826..90702- (Nannochloropsis oceanica)
ATGGTGACTCAGCCACGGAAGTTTGTGCGGGTGGCGATGTCGATGACTAC
GACGACGGGCAGCTCGAGGCCGAGGGGATCGACAACTGACATGCAAAGCC
GCTGCAACGGCGTCAACCAACTCGGGGTCGCCGTAGCTCGTCGTCCCCCC
TCGTCATCTGTCCTTGGCCGCCTCCTCATCAATATGATGATGATGCTGTC
AAAACGTCCCGCCTCTTCTCCCTACTCCTCCACTCTCCTCGTCCTCGTGG
CCACCCTCCTCTCCATTCTTGTGTCCTACTCCTCCGCCGCCGTCCTCCCT
TCTGCTTCTTCATCCTCCCGTCTCAGCAGCAGCAGCAGCAACAGCAACAG
GTGGTTCACTCCCTCCTCCGCCTCCTTCTTGCAACGTCATCGGTCCCCCT
TGCAAGCCATGGCGGGGGCACGAAGAGGCAACTATCACGTTCGCAGCGGA
CGATGCGCCGCTCAGTTGGGAGGTGGTGTGGTGGGCGAAACGTTCTTTGG
AGGCCTGCACAACTTCCTGTCTATCTACAATATCGTGCTCACGGGGCGTA
TCCTCTTGTCGTGGTTTCCTCAGGTGGCCCGGCAGCCCGTATTCGAGCCC
CTCTTCGTAGTGACTAATCCCTTCTTCAACATTTTCCGCGGCTTGATTCC
TCCCATTGCCGGTCTGGACCTCTCGCCTCTCCCTGCCTTCTTCCTCCTCT
CCTTCCTCACCAACGCCACGGAGACGATGGGCGCCGAGTTGGCCCCTAAC
GGTCCTGGCCATCGGACCCTGAACAGTCGCATGATTGCCACCTGGAGGGA
TGTGATGAAGAACAAGCAAAACCTCCGCTTGCCCCGTCTGCCCTCCTTCC
CTGCCCCCCTCCCTTCCTTGGGAGCGAGGAGAAGCTAG
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Synonyms
Publications