NO26G00250, NO26G00250 (gene) Nannochloropsis oceanica

Overview
NameNO26G00250
Unique NameNO26G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3877
Alignment locationchr26:86826..90702 -

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Properties
Property NameValue
DescriptionYlmG homolog protein 2, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:86826..90702 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003425Uncharacterised_Ycf19
Homology
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: XP_002180626.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48034.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.9 bits (289), Expect = 2.100e-22
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 0 
Query:  120 TPSSASFLQRHRSPLQAMAGARRGNYHVRSGRCAAQLGGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAPN 251
            +P ++  + R  S    +    R      S    A  G GV  + F GG  NFLSIYNIV+T RILLSWFPQ     + +P++ +T+P+ NIFRG+IPPI GLDLSPL AFFLL+ +T +T  +G E+ P+
Sbjct:   72 SPLASKKMDRSSSSRAELRRVLRERRSTTSNAAMAIPGYGVAEQVFVGGFLNFLSIYNIVITARILLSWFPQAQGVALLQPVYAITDPYLNIFRGIIPPIFGLDLSPLLAFFLLNVVTKSTAAIGYEIPPH 202
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: GAX26915.1 (YggT family protein [Fistulifera solaris])

HSP 1 Score: 112.8 bits (281), Expect = 1.800e-21
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:  157 GGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAEL 248
            G G+  + F GG  NFLSIYN+++T RILLSWFPQ       +P++ +T+PF N+FRG++PPI GLD SP+ AFFLL+ +TNAT  +G+ L
Sbjct:   67 GNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFRGVVPPIFGLDFSPILAFFLLNVVTNATAAVGSTL 157
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: GAX11123.1 (diphthine-ammonia ligase [Fistulifera solaris])

HSP 1 Score: 112.8 bits (281), Expect = 1.800e-21
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:  157 GGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAEL 248
            G G+  + F GG  NFLSIYN+++T RILLSWFPQ       +P++ +T+PF N+FRG++PPI GLD SP+ AFFLL+ +TNAT  +G+ L
Sbjct:   67 GNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFRGVVPPIFGLDFSPILAFFLLNVVTNATAAVGSTL 157
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: CEM19469.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 108.6 bits (270), Expect = 3.300e-20
Identity = 57/120 (47.50%), Postives = 74/120 (61.67%), Query Frame = 0 
Query:  160 VVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAPNGPGHRTLNSRMIATWRDVMKNKQNLRLPR 280
            VVG    GGL NFL +YN+V+T R+LLSWFP +A  PV  P+F V++ + NIFRGLIPPIAG+D S +PAF LL+F + A  +  AEL      HR       A  +    N   ++LPR
Sbjct:   74 VVGLAVAGGLANFLQLYNLVITVRVLLSWFPMLANNPVVAPIFTVSDVYLNIFRGLIPPIAGIDFSVIPAFLLLNFASQAVGSFAAELPDT---HRPAVDVSAAHQQRQRSNGMMMQLPR 190
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: OEU22481.1 (YGGT-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.8 bits (268), Expect = 5.700e-20
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 0 
Query:  153 AAQLGGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAP 250
            AA    GV  + F GG  NFLS+YNIV+T R+L SWFPQ     + +P++ VT+P+ N+FRGLIPP+ GLDLS + AF +LS L N    +GAE+ P
Sbjct:   87 AAMAIPGVAEQVFVGGFANFLSVYNIVITARVLFSWFPQAQGMAILQPVYQVTDPYLNLFRGLIPPVFGLDLSTILAFVVLSVLGNVATAVGAEITP 183
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: CBJ31375.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.9 bits (263), Expect = 2.200e-19
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0 
Query:  128 QRHRSPLQAMAGARRGNYHVRSGRCAAQLGGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAEL-APNGPGHRTLNSRMIATWRDVMKNKQNLRLPRLPSF 284
            Q H SP+Q       G Y   S   AA  G     E   GG+ NFLSIYN+++TGR+LLSW PQ+      EP++++T+P+ N FR L   I GLDLS LPAFFLLSF TNA  ++GAE+ AP   G      R  A    + ++++NL    + +F
Sbjct:   58 QPHISPVQ-------GRY---SCVAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFRRLNLTIGGLDLSVLPAFFLLSFATNAVASLGAEMPAPLKRGASWFEGRQAA----LSRSRRNLAASSVAAF 200
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: OSX73695.1 (hypothetical protein BU14_0331s0014 [Porphyra umbilicalis])

HSP 1 Score: 99.4 bits (246), Expect = 2.000e-17
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:  143 GNYHVRSGR---CAAQLGGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAPNGPGHRTLNSRMIATWR 267
            G   VR GR    AA  G  VV     GG  NF  IY  +L  R+LLSWFP      +  PL+ V +PF N FRG+IPPI GLDLSP+  F LL+ LT+AT  +GAE+ P       +++R +A  R
Sbjct:   43 GRTRVRGGRGVLAAAIPGDSVVESVTVGGFANFFGIYGNLLIARVLLSWFPAAQNVKLLSPLYTVCDPFLNFFRGVIPPIFGLDLSPIIGFTLLNALTSATVALGAEM-PGTAAGAPVDARAVALQR 168
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: XP_005705095.1 (YggT family protein [Galdieria sulphuraria] >EME28575.1 YggT family protein [Galdieria sulphuraria])

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 0 
Query:  157 GGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAE 247
            G  +VG  F GG  NF S+Y+ +L  R+LLSWFP    QP+  PLF + +P+ N+FR ++PP+ G+D SP+ AF  L F + AT  +GAE
Sbjct:   50 GDSIVGGVFVGGFLNFFSLYSNLLIVRVLLSWFPAAQNQPILRPLFTLCDPYLNLFRSVVPPVFGIDFSPILAFTALQFFSTATIALGAE 139
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: EJK55210.1 (hypothetical protein THAOC_25079 [Thalassiosira oceanica])

HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:  157 GGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAEL 248
            G  V  +   GG  NF+SIYN V+T RILLSWFPQ       +P++ +T+P+ N+FRG+IPPI GLDLSP+ AF  L+ L ++  ++ AE+
Sbjct:   75 GNSVAEQVVVGGFGNFISIYNTVITARILLSWFPQAQGIGALQPVYQITDPYLNLFRGIIPPIFGLDLSPILAFVTLNLLQSSAVSLAAEI 165
[Close]
BLAST of NO26G00250 vs. NCBI_GenBank
Match: XP_005824684.1 (hypothetical protein GUITHDRAFT_165419 [Guillardia theta CCMP2712] >EKX37704.1 hypothetical protein GUITHDRAFT_165419 [Guillardia theta CCMP2712])

HSP 1 Score: 91.7 bits (226), Expect = 4.200e-15
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 0 
Query:  148 RSGRCAAQLGGGVVG-ETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEPLFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAPNG 252
            R   CA  + G  VG E F  G  NFL++Y  +L  R+LLSWFP        +PL+ V +P+ N FRG+IPPI G+DLSP+ AF LL     A  ++GAE    G
Sbjct:   44 RRNMCAVAIPGDSVGEEVFVRGFQNFLTLYQNLLVARVLLSWFPSAQSIGALQPLYNVCDPYLNTFRGIIPPIGGIDLSPILAFTLLQVSAGAMVSLGAETPRRG 148
The following BLAST results are available for this feature:
BLAST of NO26G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002180626.12.100e-2245.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX26915.11.800e-2153.85YggT family protein [Fistulifera solaris][more]
GAX11123.11.800e-2153.85diphthine-ammonia ligase [Fistulifera solaris][more]
CEM19469.13.300e-2047.50unnamed protein product [Vitrella brassicaformis C... [more]
OEU22481.15.700e-2051.55YGGT-domain-containing protein [Fragilariopsis cyl... [more]
CBJ31375.12.200e-1942.68conserved unknown protein [Ectocarpus siliculosus][more]
OSX73695.12.000e-1744.88hypothetical protein BU14_0331s0014 [Porphyra umbi... [more]
XP_005705095.11.300e-1646.67YggT family protein [Galdieria sulphuraria] >EME28... [more]
EJK55210.11.700e-1648.35hypothetical protein THAOC_25079 [Thalassiosira oc... [more]
XP_005824684.14.200e-1544.76hypothetical protein GUITHDRAFT_165419 [Guillardia... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00250.1NO26G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00250.1NO26G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00250 ID=NO26G00250|Name=NO26G00250|organism=Nannochloropsis oceanica|type=gene|length=3877bp
CTGCTGTTGCTGCTGTTGCTGCTGCTACTATCACTTCTGCTGTGGCTGCT
GCTTCCTCCATTCCCCCCTCCTCCTACTACTCCTCGTCCAACCAACATCA
TCCGCAACGCCTGCTGCTTCTCCGAATCCCTCCATCCCTCCTTCTTCCCC
TCCCTCCCTCCGGCCATCATCCGTCGAGCCGATGGCGAAGAGGGGGAGGA
TAACGAGGAGGAAGAGAATGAGGAGGAGGAGGCGGTGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGCAGAGGAGGAGGAGTCCCCGAGGGAGGAAAGG
AAGGAGGGCGCTTCTCCACACATGTCTACGCCGTCACTAAGCCCAGGCTG
GTCCAAAAGGGAGTGAGTATGGAGGAAAGAGGGAGGGAGGAAGGAAGGGT
TGACAGTGCTCGTGCTTTCGACGGCTGGAGGGGTGTGAGGAAGGAGGGTG
GAGAGATGGGGAGGGGAGGAAAAAGCACGGCGAGTAGAAGGGAGGGGCGA
AGACGAGGAGCAAGAAGAAGGAGGTGAGGAGACTTTCTTGGGTGTTTCTC
TCGCGAGCGGGGGGGAGGGGTGGGAGGAGGTGGAGAGAGTGGAGGAGGAG
GAGGAGAAGGAGGAGGAAGTAGGGGAGGAGTAGTGTGCCGTCGTGGCCCT
CTTGACCGCAGAGTGGTGGAGAGGGTGCTCATATCCATGCTGCTGGTGCT
TCATGGCATAGCGCCGTGTAGAAGGGTGATGATTGAATGTAAAACCACTC
CCGCCATGGCAACAGTCGTCCATCGCTCTTGATCTTACGCCTGGTAGTGC
TGATAGTGCTGTTGAAGGAGAGGGCAGGCGGGCCCTCTCGCTTTGAGTGG
TCGGATCAAAATTGCGGTAGTTGTAGTTCCTATGATGAGAAATGTGGACG
AATGGTAGGGTAAGTGTGAGGTGCTTGGGAAATTCGAAAGTTTGGGGGTG
GGACAGGGGGAGGGGGTGAATGGGGAAGGATTCACACAGCCAGCCAGACA
AGGGTAGTGGTTCCAGCTTCATGCCCCTTCGACACCATCCACAGGGAAAC
AAGAAGCCGTAAGTGCGCCCATCGCGTCGCAGCATACACACGTCCGTGCT
CTCCCTACCTACAACACGATGCCCAAATGAGTTGGGTTGCGCTCTTGTTG
ATAAGATGACATACGAGCGAGCTGAGCGCGCACAGCCAGCAAGCAATGTA
TAAGACAACAATCCAGCAGACAATGTCATTACCATACGCAAGTCACCACA
AATTGGAGATGCAATTACCCCATCCACCTGCAACACGTGTCTGAGAAAGC
ATGGAACACGACTCGTCGGGATAGGTGGCGCATGCGCACTACTTTGACAG
GCAACTTGCTGCCGTTTCCTCTCGACAGAGAAGACGCTCTTCCAGAGACA
CGTTGAACCTGCCGGGACGGCAAGGTGATGGGTGACAGAGTGCCAAGCCA
CCAATCGAACGCAGCAAATGGGCTTTGCGTGCAAAAGATGAAGAACCATA
CAATAGGGTAAGCCATTTCCATGGTGACTCAGCCACGGAAGTTTGTGCGG
GTGGCGATGTCGATGACTACGACGACGGGCAGCTCGAGGCCGAGGGGATC
GACAACTGACATGCAAAGCCGCTGCAACGGCGTCAACCAACTCGGGgtaa
gacaccacttgccacttgccagcccttcagcactgacgttgaggtcttgt
ggctttagtcgcacgtcatcaggacgtgtttttcttttcttttcatcctt
ttatttggttctctcttctgggtgtcacgcgtgagcgactgcatgcgtgg
aacggtgagcgatcaagatattcgtgctttctagaccctcggtactccgc
ccctacggaaaataagccgaatcagatcgaaccaccgcgcctctcgcgtc
aggcctactaaatgtattaacttttaacactgcaggcattgtcgcctctt
ccccgccccgcctaacttcttctactcgtccctcccctccccccaaactg
cactgacgaccaaaacagGTCGCCGTAGCTCGTCGTCCCCCCTCGTCATC
TGTCCTTGGCCGCCTCCTCATCAATATGATGATGATGCTGTCAAAACGTC
CCGCCTCTTCTCCCTACTCCTCCACTCTCCTCGTCCTCGTGGCCACCCTC
CTCTCCATTCTTGTGTCCTACTCCTCCGCCGCCGTCCTCCCTTCTGCTTC
TTCATCCTCCCGTCTCAGCAGCAGCAGCAGCAACAGCAACAGGTGGTTCA
CTCCCTCCTCCGCCTCCTTCTTGCAACGTCATCGGTCCCCCTTGCAAGCC
ATGGCGGGGGCACGAAGAGGCAACTATCACGTTCGCAGCGGACGATGCGC
CGCTCAGTTGGgtaagtgatagcttaggattaaagagaagtaggaaggag
ttaaaaatgagatttcagaatcggactctgaatgtccccgcgtgcgaact
cttttgttgttgcattctttcacctgccacaatgccatgtccagaatacc
ctgaccaggcctctggagaagagagacacgtgactgatgctggtgcaaag
gcacacatcttctcgttttaccttcctccccacgcgttgggcaccagcat
atgcttgtgcggaagagagataaggagaataagaattatattgtaccaag
caatcaaaccatggtgcggtgtggatgaagggcaaggaaggcatcggaag
ggtagaagagaacaggagcagcacgcttgaaatgaattgcggcgtgtgac
tgtaaagggccagcgcaatgcacaaaggcgtagctatgcacgcatgtgca
acacaccgcttccagacctccaaccctcccttcccttcctctcttccctc
ttccctccccccagGAGGTGGTGTGGTGGGCGAAACGTTCTTTGGAGGCC
TGCACAACTTCCTGTCTATCTACAATATCGTGCTCACGGGGCGTATCCTC
TTGTCGTGGTTTCCTCAGgtacggccagggagggcgggaatgagggcggg
gagaagtgtcggatgacaggaaggagtgggaatggatgcatctgcttgtg
gatggtggctcgatctaaactcccctccctctctcccacccaccctcagG
TGGCCCGGCAGCCCGTATTCGAGCCCCTCTTCGTAGTGACTAATCCCTTC
TTCAACATTTTCCGCGGCTTGATTCCTCCCATTGCCGGTCTGGACCTCTC
GCCTCTCCCTGCCTTCTTCCTCCTCTCCTTCCTCACCAACGCCACGGAGA
CGATGGGCGCCGAGTTGGCCCCTAACGgtaaacttccctcccttcttcct
ccccttccctccttcagccatcggccactaggctgtaatcaatcatcacc
tggatgaagagcaagctctccctgcctccttccctccctcccttcccttc
attttcccaccgcagagcaactccattttgatatacctacccgtccctcc
ctccctccctcccctcccttccttcctcagGTCCTGGCCATCGGACCCTG
AACAGTCGCATGATTGCCACCTGGAGGGATGTGATGAAGAACAAGCAAAA
CCTCCGCTTGCCCCGTCTGCCCTCCTTCCCTGCCCCCCTCCCTTCCTTGG
GAGCGAGGAGAAGCTAGGATTAAAGAGAGTAGGGAAAGAGGAAGGATAAA
GAGGAGTGAGGGAAGGAGGAAAGGTGCACATTTTGCGCGAGGAGAGATGG
AGACAGACGGTGAGAGGGAAGGACTGTCAGGGTTCGCGAAAGAGTAAAGG
AAGAGTCAAAGTCTCTTGTTTATTCCCAAATAGAATGAATGTGATAGGAA
GTGGGCTCACTAGTAAAGGTGTAAAGAGATGTCTTTGAGTAGCCCTGGGC
AACTGTCTTTCGTGTAGGGAGGGAAGG
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protein sequence of NO26G00250.1

>NO26G00250.1-protein ID=NO26G00250.1-protein|Name=NO26G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MVTQPRKFVRVAMSMTTTTGSSRPRGSTTDMQSRCNGVNQLGVAVARRPP
SSSVLGRLLINMMMMLSKRPASSPYSSTLLVLVATLLSILVSYSSAAVLP
SASSSSRLSSSSSNSNRWFTPSSASFLQRHRSPLQAMAGARRGNYHVRSG
RCAAQLGGGVVGETFFGGLHNFLSIYNIVLTGRILLSWFPQVARQPVFEP
LFVVTNPFFNIFRGLIPPIAGLDLSPLPAFFLLSFLTNATETMGAELAPN
GPGHRTLNSRMIATWRDVMKNKQNLRLPRLPSFPAPLPSLGARRS*
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Synonyms
Publications