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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:41783..46054 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00130.1 vs.
Match: EWM23046.1 (rna recognition motif-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 197.6 bits (501), Expect = 7.300e-47 Identity = 101/142 (71.13%), Postives = 113/142 (79.58%), Query Frame = 0
Query: 1 MSLLGFKLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELHDSELDGSKITVERSTQGMVDKDRGRGGGGGGGGGGGGGGGGGDGMEVAGRQEDVRLFVGGLPDGCTERDLMD 143
MSL+GFKLFIGNLSK+T+D GLEKYFKDAIGGEIVWAQVCKDRNTG+SKRYGFITFKDEADG RA+EELH++ELDGSKITV+RSTQGM++KD GGG G E E+VRLFVGGLPD C E DLM+
Sbjct: 1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKD-----------------GGGRGAE----DENVRLFVGGLPDNCVEEDLME 121
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00130.1 ID=NO26G00130.1|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp TGGTGCCTTGCCTCGGGTCTGTTGATGAAGGATAAAGGGAAAGGGGAGGG GAGGTTTACGCTCGAGCATATTATAGTACGTTCGGAGGAAAAGAACAAAT GCAAGTGTGGACTTTTTGCTAAGTACGCATTCTTATGTATGTAAACGACT GTGAATTTGGTCGAGTACATAGAGAGCTGGCAGCAAATGATGCTGCACCA GCTATCTCATCACTGAAGGAAAAAGAACCCACCTGCATCAAGCAATAGAA CATCATAGCCCTGCCTTGCCCTGGCTACGGTCGTATGCATCGACGCATCC ATGGATCAAACGCGCGTACAACACAGCTTCTACCACCATCACCTCACATC TATTTGCTATTCTAGCAGCAGGTGTGGCATGCGGGACTCGAACGCAGTTA CAGACCCCTCCCAGGGCTTCCTGCGTCTACCAAAAGCGCACCTTTTATTT ACCTCCAGCCCCCCCCCTTCCACACGCTACTGAACCCCTTCCTCATCCCT TTCCTCGCGCGTCGTACGCATGCCGCTGTCTTCTTCCTACATCTCCTTCT TCCCCTCCTCTCCCGCCTCCCCTCATGTCCTTCCACGGAAACCTTATCCA CCTGTCCTCCCACGCCCCTCCCTCCTTCCACCCAATACTTGACGCTTGCG CCTAGCATTTTGTCTCAGGCAGTAGCAGCAGCAAGAGACTCTATGTTGGC ATGAGACACACACTGACCTGCGCCTTGCTTCCCCTTTTTCTGAGGCGACC TTTGTCGTCCTCCCACTGCTCTCCTTGTAAAGAGCTCCAACGCAGCCACA GCTCAGCGCCACCACACCCACCAACCCCCCCTTCTCCTCCTCCTCCTCCC CTTCTCGTGTTCCTCTACACATACACACACCTCTCAAAGCACGCACGGGC CATAAGCAACCGGGGCAGCATCAGCAGCAGTAGCCGCAGCATCAGCACCA GCGGCAAATCACCTCTTCCCAGTCCTCGTTCTCCCCTTCCTGCACGCACG AACAAAAATGTCTCTCCTGGGTTTCAAGCTCTTTATAGGAAACCTCTCTA AGGACACGAATGATATCGGCCTCGAGAAATACTTCAAGGATGCCATCGGG GGCGAGATCGTGTGGGCGCAGGTATGCAAGGACCGCAACACGGGCGACAG CAAGCGCTACGGCTTTATCACCTTCAAGGACGAGGCGGACGGGATCCGGG CCGTGGAGGAGTTGCATGATTCCGAGCTGGACGGCTCTAAGATCACAGTG GAGCGGAGCACACAGGGAATGGTTGACAAGGACAGGGGCCGTGGAGGTGG AGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGATGGAA TGGAGGTGGCAGGGCGGCAGGAAGACGTGCGCTTGTTCGTGGGAGGACTG CCGGATGGATGCACAGAAAGAGACCTGATGGACCTCTTCAAGGACTGCGA GCCTGTGGAGGCCTTCATGTGCGGCTCGAAGCATCCCCCCTGTGGCTTTG TCACTATCAGGCGCTCCGACGCAAACTTGGAAAAGGCGCAGAGCTACGAC GGCATCTACTACAAAGACTCCCAGTGGCGCCTGGCGGTCAAGGCGGCGAA GCCCGTGACGGACCGCGTCCGTCGAGGCCGCAGCCGGAGCCCACCCCGAG CACGAGGCCGATCCCGCTCTCCTCCTCCTCGCTCCGGAGGGGTCCTATAC CGAGGGATGGACGGAGGGAGGGAGGTCCGCCTCTTCGTGGGAGGACTGCC GGAGGGCGTCTCCGAAAAGGACTTGATGCACAAGTTTCGACGCTCCGATC CTGTTGAAGCCTTCCTCCCTCCCCGTCAGTCGAAGGCGCCCCTGTACGGT TTCGTCGTCATCCGCGACGAGGGCCGAAACGTGAAGGAGGCCTTTGCCTT GGAAGGGGATTATTTCGACGACCGATGCCCCCACCGCTTGGCAGTCACCT TCTCCAAGCCCAGGGGCGGCGGGGGCCGAGATGTGGGGGGCGGACGCGGT GGGGGGGACGATCGTTATGGTGGAGGAGGAGGAGGGAGGGAAGGAGGAGG CTACAGCCGCGGACGCAGTCGGTCACCTAGCTACCCCCGCGGTGGGGGCC GTCGGGGTCGCTCACCTTCGTATGAACGTGCGCCACGACGAGGCCGATCT CGCTCTCGGTCGCGTTCTCGCTCCCGTCGGTACTCGCCTTACTAGAGGCG CAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG back to topprotein sequence of NO26G00130.1 >NO26G00130.1-protein ID=NO26G00130.1-protein|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp MSLLGFKLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKR YGFITFKDEADGIRAVEELHDSELDGSKITVERSTQGMVDKDRGRGGGGG GGGGGGGGGGGGDGMEVAGRQEDVRLFVGGLPDGCTERDLMDLFKDCEPV EAFMCGSKHPPCGFVTIRRSDANLEKAQSYDGIYYKDSQWRLAVKAAKPV TDRVRRGRSRSPPRARGRSRSPPPRSGGVLYRGMDGGREVRLFVGGLPEG VSEKDLMHKFRRSDPVEAFLPPRQSKAPLYGFVVIRDEGRNVKEAFALEG DYFDDRCPHRLAVTFSKPRGGGGRDVGGGRGGGDDRYGGGGGGREGGGYS RGRSRSPSYPRGGGRRGRSPSYERAPRRGRSRSRSRSRSRRYSPY* back to topmRNA from alignment at chr26:41783..46054+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00130.1 ID=NO26G00130.1|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=4272bp|location=Sequence derived from alignment at chr26:41783..46054+ (Nannochloropsis oceanica) TGGTGCCTTGCCTCGGGTCTGTTGATGAAGGATAAAGGGAAAGGGGAGGG
GAGGTTTACGCTCGAGCATATTATAGTACGTTCGGAGGAAAAGAACAAAT
GCAAGTGTGGACTTTTTGCTAAGTACGCATTCTTATGTATGTAAACGACT
GTGAATTTGGTCGAGTACATAGAGAGCTGGCAGCAAATGATGCTGCACCA
GCTATCTCATCACTGAAGGAAAAAGAACCCACCTGCATCAAGCAATAGAA
CATCATAGCCCTGCCTTGCCCTGGCTACGGTCGTATGCATCGACGCATCC
ATGGATCAAACGCGCGTACAACACAGCTTCTACCACCATCACCTCACATC
TATTTGCTATTCTAGCAGCAGGTGTGGCATGCGGGACTCGAACGCAGTTA
CAGACCCCTCCCAGGGCTTCCTGCGTCTACCAAAAGCGCACCTTTTATTT
ACCTCCAGCCCCCCCCCTTCCACACGCTACTGAACCCCTTCCTCATCCCT
TTCCTCGCGCGTCGTACGCATGCCGCTGTCTTCTTCCTACATCTCCTTCT
TCCCCTCCTCTCCCGCCTCCCCTCATGTCCTTCCACGGAAACCTTATCCA
CCTGTCCTCCCACGCCCCTCCCTCCTTCCACCCAATACTTGACGCTTGCG
CCTAGCATTTTGTCTCAGGCAGTAGCAGCAGCAAGAGACTCTATGTTGGC
ATGAGACACACACTGACCTGCGCCTTGCTTCCCCTTTTTCTGAGGCGACC
TTTGTCGTCCTCCCACTGCTCTCCTTGTAAAGAGCTCCAACGCAGCCACA
GCTCAGCGCCACCACACCCACCAACCCCCCCTTCTCCTCCTCCTCCTCCC
CTTCTCGTGTTCCTCTACACATACACACACCTCTCAAAGCACGCACGGGC
CATAAGCAACCGGGGCAGCATCAGCAGCAGTAGCCGCAGCATCAGCACCA
GCGGCAAATCACCTCTTCCCAGTCCTCGTTCTCCCCTTCCTGCACGCACG
AACAAAAATGTCTCTCCTGGGTTTCAAGCTCTTTATAGGAAACCTCTCTA
AGGACACGAATGATATCGGCCTCGAGAAATACTTCAAGGATGCCATCGGG
GGCGAGATCGTGTGGGCGCAGGTGCGTCCCTCCCTCCCTCCCTCCCACCC
TCTCTTTCTCCCTCCCTCCCTCCCGACCAAGCTTTTTAACCATCCCCTCA
TTCTCACTCCCTAGGTATGCAAGGACCGCAACACGGGCGACAGCAAGCGC
TACGGCTTTATCACCTTCAAGGACGAGGCGGACGGGATCCGGGTATGATG
TAGGCCCTCCTCCTCCCTCCCCCCTCCCTCCCCTCCTCCCTGGCACCCTG
CCTCTCGCACTGTGACGAAAGACGCACGTGAAGTTCCCCCCCTTTTCGCT
CCCCGTCATACCTACCTACTTAGGGACCTCCGTCCAACCGACGACACAGA
CATGTGTCTGCCATCTACTCTCAAGGGGACCCAAAGCTAACCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCGTGGA
GGAGTTGCATGATTCCGAGCTGGACGGCTCTAAGATCACAGTGGAGCGGA
GCACACAGGGAATGGTTGACAAGGGTAAGCAACGGGAGATAAGGAGGGAT
GGAGATGGGAAGGGAGGGGTCGAGGGAGGGCTTGTACTTTTGCCTGGTGC
CACGTGCTCTCTCATACTCACCAAATAGCACGCTCTTTCCCTCCCTCGTC
CCTCCCTCCCTCCCTCCCTCCCTCCTCCCCCCTTATGAAAATACAGACAG
GGGCCGTGGAGGTGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCG
GCGGCGGCGATGGAATGGAGGTGGCAGGGCGGCAGGAAGACGTGCGCTTG
TTCGTGGGAGGACTGCCGGATGGATGCACAGAAAGAGACCTGATGGAGTG
AGTGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGGAGGGTATGGG
ATACACAAGCCACAATAACAGTTGCATGCCCACTCATTTTTCCCCTTCCC
CTCCCTTCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCCCCAGCCTCTTCA
AGGACTGCGAGCCTGTGGAGGCCTTCATGTGCGGCTCGAAGCATCCCCCC
TGTGGCTTTGTCACTATCAGGCGCTCCGACGCAAACTTGGAAAAGGCGCA
GAGCTACGACGGTACGCCCCCTCCTCCCTCCCTCCCTCCCTCCCTCACTC
CCGTCCTGCCCTTCCTTCTTGTCTAGGTTCTTCCCACACTTACCCGCCTC
TCCCTTTCTCCTCACCTTCCCTCCCTCTCTCCCTTCCCCCCTCCCTCCCT
CCCCTCCCTCGCAGGCATCTACTACAAAGACTCCCAGTGGCGCCTGGCGG
TCAAGGTAAGGAGTGAAGGAGGGGAATCAAGAGGGAATAAAAGGGAGCTT
GAGCCATTCACTTGTACTTCTTTACTGACCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTGGCAGGCGGCGAAGCCCGTGACGGACCGCG
TCCGTCGAGGCCGCAGCCGGAGCCCACCCCGAGCACGAGGTATAGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGG
GAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAAGGGAGGGGTTGTTCAA
GTGACGATAAAATGGGCTGTCACAGACCAACTTGCAGAGAGTAACATTCA
CCCTCTTCTCCTCCCTCCTTTCCTCCCGCCCTCCCTCCCTCCCTCCCTCA
GGCCGATCCCGCTCTCCTCCTCCTCGCTCCGGAGGGGTCCTATACCGAGG
GATGGACGGAGGGAGGGAGGTCCGCCTCTTCGTGGGAGGACTGCCGGAGG
GCGTCTCCGAAAAGGACTTGATGCACAAGTTTCGACGGTAGGGAGGGAGG
GAGGGAGGGAGGGGGGGAGGGAGGGGGGGGGAGGAGTCGCTTTGTTCCTT
TGCGTGTGTCTATATTGGATGGTGATTTAGGCCTCTCTCGTCGAGGACCC
GGCCATCCACCTCGAGGGATGTCACCCCTCTCTCCCTCTCTCCCTCCCTC
GCTCCCTCCTTTCTTCCCTCCCTCCTTCCTTCCTTCCCGGGCCTCCTTCC
TTCTAGGTAGAAGACGACGACAACGAGACCCACCACCTCCCTTTGCCCAT
CTCAACTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCCTCAGCTCC
GATCCTGTTGAAGCCTTCCTCCCTCCCCGTCAGTCGAAGGCGCCCCTGTA
CGGTTTCGTCGTCATCCGCGACGAGGGCCGAAACGTGAAGGAGGCCTTTG
CCTTGGAAGGGTGAGGAGGGTGGGAGGGCGGGCGGACGGGAGGGAGGGAA
AGAGGAGATTTCGTGTAAAATGTCTTCCTGCCTAAAGTTGATGATCCTGT
TGATCCTCACAGCCCCCGTCCCCTCCTCCCTCCCTCCCTCCTTCCCCTCC
CTCCCTCCCACCCTCCCCTAGGGATTATTTCGACGACCGATGCCCCCACC
GCTTGGCAGTCACCTTCTCCAAGCCCAGGGGCGGCGGGGGCCGAGATGTG
GGGGGCGGACGCGGTGGGGGGGACGATCGTTATGGTACGTAGAGGGAGGG
GAGGAGGGAGGGAGGGAAGGAAGGAGGGATTGGCGGCTTCTCTTCTTTTT
AAGTAAGGAAGACACTCACGTACTTTCTTCCCTCCCTCCCTCCCTCCCCT
CCCTCCTTCCTTCCTCCCTCCCCCCCTCCTTCCTTCTCTTTCCCCGCCCT
TTCCCTCTGTCTGTCTCTGTCTCCCGTCCTCTCCCATCAGGTGGAGGAGG
AGGAGGGAGGGAAGGAGGAGGCTACAGCCGCGGACGCAGTCGGTCACCTA
GCTACCCCCGCGGTGGGGGCCGTCGGGGTCGCTCACCTTCGTATGAACGT
GAGTAGAGGGAGGGGGGGAGGAAGGAGGGAGGGAGGGAGGGATGTGTTCG
AAGTGAGTTTTTTGGGCTATTTGCTTTCCGCAAAGCAGGTGCTTTTAACG
TAGCGGTGGGAAGGCCACAGAGACTCGCTGGCATTCCCTCTTGATAACGT
TTTTGATTAAGACATGTAATGTGATCAAATTAAATCTTATGTAATCTAAT
TTAATTGTATCGAACAGGTGCGCCACGACGAGGCCGATCTCGCTCTCGGT
CGCGTTCTCGCTCCCGTCGGTACTCGCCTTACTAGAGGCGCAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGG back to topCoding sequence (CDS) from alignment at chr26:41783..46054+ >NO26G00130.1 ID=NO26G00130.1|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr26:41783..46054+ (Nannochloropsis oceanica) ATGTCTCTCCTGGGTTTCAAGCTCTTTATAGGAAACCTCTCTAAGGACAC GAATGATATCGGCCTCGAGAAATACTTCAAGGATGCCATCGGGGGCGAGA TCGTGTGGGCGCAGGTATGCAAGGACCGCAACACGGGCGACAGCAAGCGC TACGGCTTTATCACCTTCAAGGACGAGGCGGACGGGATCCGGGCCGTGGA GGAGTTGCATGATTCCGAGCTGGACGGCTCTAAGATCACAGTGGAGCGGA GCACACAGGGAATGGTTGACAAGGACAGGGGCCGTGGAGGTGGAGGAGGG GGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGATGGAATGGAGGT GGCAGGGCGGCAGGAAGACGTGCGCTTGTTCGTGGGAGGACTGCCGGATG GATGCACAGAAAGAGACCTGATGGACCTCTTCAAGGACTGCGAGCCTGTG GAGGCCTTCATGTGCGGCTCGAAGCATCCCCCCTGTGGCTTTGTCACTAT CAGGCGCTCCGACGCAAACTTGGAAAAGGCGCAGAGCTACGACGGCATCT ACTACAAAGACTCCCAGTGGCGCCTGGCGGTCAAGGCGGCGAAGCCCGTG ACGGACCGCGTCCGTCGAGGCCGCAGCCGGAGCCCACCCCGAGCACGAGG CCGATCCCGCTCTCCTCCTCCTCGCTCCGGAGGGGTCCTATACCGAGGGA TGGACGGAGGGAGGGAGGTCCGCCTCTTCGTGGGAGGACTGCCGGAGGGC GTCTCCGAAAAGGACTTGATGCACAAGTTTCGACGCTCCGATCCTGTTGA AGCCTTCCTCCCTCCCCGTCAGTCGAAGGCGCCCCTGTACGGTTTCGTCG TCATCCGCGACGAGGGCCGAAACGTGAAGGAGGCCTTTGCCTTGGAAGGG GATTATTTCGACGACCGATGCCCCCACCGCTTGGCAGTCACCTTCTCCAA GCCCAGGGGCGGCGGGGGCCGAGATGTGGGGGGCGGACGCGGTGGGGGGG ACGATCGTTATGGTGGAGGAGGAGGAGGGAGGGAAGGAGGAGGCTACAGC CGCGGACGCAGTCGGTCACCTAGCTACCCCCGCGGTGGGGGCCGTCGGGG TCGCTCACCTTCGTATGAACGTGCGCCACGACGAGGCCGATCTCGCTCTC GGTCGCGTTCTCGCTCCCGTCGGTACTCGCCTTACTAG back to top
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