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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:25872..27686 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00090.1 vs.
Match: XP_005855932.1 (hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526]; EKU20433.1 hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 210.7 bits (535), Expect = 5.200e-51 Identity = 127/223 (56.95%), Postives = 152/223 (68.16%), Query Frame = 0
Query: 27 IHKPLRRTSTATMERQRSTAAAGHFSLGLPLLLVVVLLPITTLAWQPRVSPSMQQ--------EPS-SKRRAALQRREDSLFHQTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNINRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREATMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWK 241
I P RR + RQ++T S+ L LL ++V P + +WQPR+ P+M+ EPS S R A + R +L Q A +S F LSS F P P AA+DK I+EAR KL EL+E KNI RLETAI+NADW+TLKQ S+QFDAYLRGDLMGTARKG +DKK+ANSIREATMYSLIKVNKGARASD QA EGV ELRSNL+AF+SL W+
Sbjct: 6 ISTPHRRECEGGIRRQKTTC-----SISLCLLFLLVD-PASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWE 222
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00090.1 ID=NO26G00090.1|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp CTTTTTCGTGCCATGCCACGCGCCTCGCTTAGTTGTAATGTATCTGCGGC ATGGCCTTCACTTTCATTCATCTCTGGCCTGTCTCTGCTAAGAAACGATC GAGATTATTGCCTGGGCCTGTCCGAAACCAACAGCAGTGTTGACCTCCTC TCTCCTCGCTTCAGAGTCTGGATGCGGATCATCCAGGCATGATGATTAAC GTCAACATCTCAAGCAGCCCTTCCATCAACACGACACATACTTTCCTCTC TCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGACATCCACCGCAA CAATGGAACGACAACGATCAACGGCAGCCGCAGGGCATTTCTCCCTCGGT CTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCACCACCTTGGCCTG GCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGTCCTCCAAGCGCC GCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCACCAGACCGCTGGG TTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTAC GCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTAAGGAGGCAAGGG ACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATCAACAGGTTAGAA ACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCAGGTTTCAAAACA ATTTGACGCCTATCTCCGGGGGGACCTGATGGGCACGGCCCGAAAGGGTG CCCTTGACAAGAAGGCCGCCAATTCTATTCGAGAGGCCACGATGTACAGC CTCATAAAAGTCAACAAGGGTGCGCGGGCTTCGGACGCAGCCCAGGCCCA AGAGGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCTTCCTCAGCTTGC CGTGGAAGACAGAGGGGGAGGGGGAATGAGCAGAGGGAGGGAGGAAGAGG CATAATGGCAGGGGATGGATGAATCCAAAGAATTAATTGCTCGAGACAGT AATTGGAAGAGGCGAGAGATTAGGAGCACCAATTTTTCGGGTGGATGAGG CCGACCGCCTCTAGAGGATTCTTACAGCTCTAGACTTTGCAATCATTCTT CTCTTTTTTCCGCACTCTTTTTTCTTCTTCTCTCTTTTGGTGTTTCTCGA GCTCCCTCGCTCGCGCTCGAGTTCGCTCTCTTGCCCTGTCCTCTTCCTCA TTCCCATGTCTGCCTTCTCCCTCCCTCTCATCCCCAGAACCACACACGAC CTCTTTCCTCCCCATACCCGGAGGTCTCTTTCCATCGCCTGCTATCCCGT GCTGTACGTGAACGCTTATGTCCCACATTGCAATGCGCCCACACGACCAT TACTATATCTATGCGCAC back to topprotein sequence of NO26G00090.1 >NO26G00090.1-protein ID=NO26G00090.1-protein|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp MMINVNISSSPSINTTHTFLSQARTVIHKPLRRTSTATMERQRSTAAAGH FSLGLPLLLVVVLLPITTLAWQPRVSPSMQQEPSSKRRAALQRREDSLFH QTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNI NRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREA TMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWKTEGEGE* back to topmRNA from alignment at chr26:25872..27686- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00090.1 ID=NO26G00090.1|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp|location=Sequence derived from alignment at chr26:25872..27686- (Nannochloropsis oceanica) CTTTTTCGTGCCATGCCACGCGCCTCGCTTAGTTGTAATGTATCTGCGGC
ATGGCCTTCACTTTCATTCATCTCTGGCCTGTCTCTGCTAAGAAACGATC
GAGATTATTGCCTGGGCCTGTCCGAAACCAACAGCAGTGTTGACCTCCTC
TCTCCTCGCTTCAGAGTCTGGATGCGGATCATCCAGGCATGATGATTAAC
GTCAACATCTCAAGCAGCCCTTCCATCAACACGACACATACTTTCCTCTC
TCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGACATCCACCGCAA
CAATGGAACGACAACGATCAACGGCAGCCGCAGGGCATTTCTCCCTCGGT
CTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCACCACCTTGGCCTG
GCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGTCCTCCAAGCGCC
GCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCACCAGACCGCTGGG
TTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTAC
GCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTAAGGAGGCAAGGG
ACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATCAACAGGTTAGAA
ACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCAGGTAGGGAGGGG
AAAGGGGGGAGGAAAGGAGGAAAGGAGGGAGGGAGGCGAGGAAGCAGGAA
GAAGTTGGGGTTTATGGGTGTATATACATGTATATTTAAGGGAAGAAGGA
GTGGCTGTCGAGCGAGGAAAATTGAGATGTGCAAATGGACAGACGTGCAG
AGAGGCTTGTGTATACCTCTATCCTTCATTGAGCTTATTCCTTCCCTTCT
TTCTCCCTGCCCTCTCTCCTCCAGGTTTCAAAACAATTTGACGCCTATCT
CCGGGGGGACCTGATGGGCACGGCCCGAAAGGGTGCCCTTGACAAGAAGG
CCGCCAATTCTATTCGAGAGGCCACGATGTACAGCCTCATAAAAGTGTGT
TGTTCCTCCCTCCCTTATCCCGTTCCCTCCTTTCTATCTTTCCTCCCTCC
CTCCCTCCCTCCCTCTTCTTCCTTCTTTATTTACCTCCTCCCCCTGTTTT
TCCATCCTCGCCATTGTTTCAAAATTTAGCGAGTTTGCTCCCGTCTTAGC
TAGCCCTCCCTCCCTCCCTCCCTCTCCCCCGCCCTCCCCGCCTCCCTCCC
CTTTAGGTCAACAAGGGTGCGCGGGCTTCGGACGCAGCCCAGGCCCAAGA
GGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCTTCCTCAGCTTGCCGT
GGAAGACAGAGGGGGAGGGGGAATGAGCAGAGGGAGGGAGGAAGAGGCAT
AATGGCAGGGGATGGATGAATCCAAAGAATTAATTGCTCGAGACAGTAAT
TGGAAGAGGCGAGAGATTAGGAGCACCAATTTTTCGGGTGGATGAGGCCG
ACCGCCTCTAGAGGATTCTTACAGCTCTAGACTTTGCAATCATTCTTCTC
TTTTTTCCGCACTCTTTTTTCTTCTTCTCTCTTTTGGTGTTTCTCGAGCT
CCCTCGCTCGCGCTCGAGTTCGCTCTCTTGCCCTGTCCTCTTCCTCATTC
CCATGTCTGCCTTCTCCCTCCCTCTCATCCCCAGAACCACACACGACCTC
TTTCCTCCCCATACCCGGAGGTCTCTTTCCATCGCCTGCTATCCCGTGCT
GTACGTGAACGCTTATGTCCCACATTGCAATGCGCCCACACGACCATTAC
TATATCTATGCGCAC back to topCoding sequence (CDS) from alignment at chr26:25872..27686- >NO26G00090.1 ID=NO26G00090.1|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr26:25872..27686- (Nannochloropsis oceanica) ATGATGATTAACGTCAACATCTCAAGCAGCCCTTCCATCAACACGACACA TACTTTCCTCTCTCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGA CATCCACCGCAACAATGGAACGACAACGATCAACGGCAGCCGCAGGGCAT TTCTCCCTCGGTCTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCAC CACCTTGGCCTGGCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGT CCTCCAAGCGCCGCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCAC CAGACCGCTGGGTTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTT TGCCCTGCCTACGCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTA AGGAGGCAAGGGACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATC AACAGGTTAGAAACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCA GGTTTCAAAACAATTTGACGCCTATCTCCGGGGGGACCTGATGGGCACGG CCCGAAAGGGTGCCCTTGACAAGAAGGCCGCCAATTCTATTCGAGAGGCC ACGATGTACAGCCTCATAAAAGTCAACAAGGGTGCGCGGGCTTCGGACGC AGCCCAGGCCCAAGAGGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCT TCCTCAGCTTGCCGTGGAAGACAGAGGGGGAGGGGGAATGA back to top
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