NO25G02000.1, NO25G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G02000.1
Unique NameNO25G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length983
Alignment locationchr25:621013..621995 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:621013..621995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G02000.1 vs.
Match: EWM23030.1 (hypothetical protein Naga_100740g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 1.400e-18
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 0 
Query:    9 VSVAVFGLMVAVSGSIAYGVHHFDE-------NMAATEIKYIEDKAATEIKLAATEMVRIEDMAATEMVRLQNKAAT-------DIARIEGERRLSEERLRAEVELYRYDMR 107
            V+VAV GL+ AV+GS A  VHH D+       + AATEI+ I+DKA  ++    TE+ RI+D AATE+ R+ +KAAT       D+AR+EGERRLSEERLRAEVE Y+YD+R
Sbjct:    4 VTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAATEIQRIQDKATADVARDQTEIKRIQDKAATEIKRIHDKAATEIAQAKADVARVEGERRLSEERLRAEVERYKYDLR 115
The following BLAST results are available for this feature:
BLAST of NO25G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23030.11.400e-1854.46hypothetical protein Naga_100740g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G02000NO25G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G02000.1NO25G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G02000.1.cds1NO25G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G02000.1 ID=NO25G02000.1|Name=NO25G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=983bp
CTGGGATCTTCCAATCTCTGAATTCCACAGACAGCATATGCCTCGCGTCG
GTGACTCCCTTCCTGGATAGCGTCGATAAGCCCTTTACATCTCATGCTGC
TAGGTGTGTCCGTGTGCGGCTCAGGCTCGCCTCAAGGGCGAGGCGGCGCG
CTTCCAAGACAAAGTGGAAATGTATCGGTACTACGTACAGGTGTTCGGGA
CGCGGGATCACGAGGGCTTGTTGATGGGGTTGGGGGACATTCGGTGCACG
CGATCGCAAAGTGTCCGCGGCATGTTGATCCGTTCGCATGTTTACGTTTT
AATCTTTGTTCTGCGAGCAAGGAACCGTGCCAAGGTATTCACTCATTAGC
ACATCCATACACGCCTACAGGGAAGGGACGCGTGCTGCGGGGGGCGTTTT
CCTCGACAGCCCACACGGGGACTGGCACACACATGCAGTAAGGGGGGCTC
GGATGATACATTTGAAATGGTTTAAAGTATCTGTAGCTGTCTTCGGCTTG
ATGGTCGCAGTTTCTGGCTCTATCGCGTACGGCGTCCATCATTTCGACGA
GAACATGGCAGCGACTGAGATCAAGTATATCGAGGATAAGGCGGCGACGG
AGATCAAGCTGGCAGCGACGGAGATGGTGCGCATCGAGGACATGGCGGCG
ACGGAGATGGTACGTCTCCAGAACAAGGCGGCGACGGACATCGCGCGCAT
CGAGGGCGAGCGAAGGTTGTCGGAAGAGCGTTTGAGGGCGGAGGTGGAGC
TGTACAGATATGATATGCGCGGTCCTAGATCATATTTGTACAACTCCACC
TCCGCCCTCAAACGCTCTTCCGACAACCTTCGCTCGCCCTCGATGCGCGC
GATGTCCGTCGCCGCCTTGTTCTGGAGACGTACCATCTCCGTCGCCGCCA
TGTCCTCGATGCGCACCATCTCCGTCGCCGCCTTATCCTCGATATACTTG
ATCTCAGTCGCTGCCATGTTCCGGTCGAAATGA
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protein sequence of NO25G02000.1

>NO25G02000.1-protein ID=NO25G02000.1-protein|Name=NO25G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MIHLKWFKVSVAVFGLMVAVSGSIAYGVHHFDENMAATEIKYIEDKAATE
IKLAATEMVRIEDMAATEMVRLQNKAATDIARIEGERRLSEERLRAEVEL
YRYDMRGPRSYLYNSTSALKRSSDNLRSPSMRAMSVAALFWRRTISVAAM
SSMRTISVAALSSIYLISVAAMFRSK*
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mRNA from alignment at chr25:621013..621995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G02000.1 ID=NO25G02000.1|Name=NO25G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=983bp|location=Sequence derived from alignment at chr25:621013..621995+ (Nannochloropsis oceanica)
CTGGGATCTTCCAATCTCTGAATTCCACAGACAGCATATGCCTCGCGTCG
GTGACTCCCTTCCTGGATAGCGTCGATAAGCCCTTTACATCTCATGCTGC
TAGGTGTGTCCGTGTGCGGCTCAGGCTCGCCTCAAGGGCGAGGCGGCGCG
CTTCCAAGACAAAGTGGAAATGTATCGGTACTACGTACAGGTGTTCGGGA
CGCGGGATCACGAGGGCTTGTTGATGGGGTTGGGGGACATTCGGTGCACG
CGATCGCAAAGTGTCCGCGGCATGTTGATCCGTTCGCATGTTTACGTTTT
AATCTTTGTTCTGCGAGCAAGGAACCGTGCCAAGGTATTCACTCATTAGC
ACATCCATACACGCCTACAGGGAAGGGACGCGTGCTGCGGGGGGCGTTTT
CCTCGACAGCCCACACGGGGACTGGCACACACATGCAGTAAGGGGGGCTC
GGATGATACATTTGAAATGGTTTAAAGTATCTGTAGCTGTCTTCGGCTTG
ATGGTCGCAGTTTCTGGCTCTATCGCGTACGGCGTCCATCATTTCGACGA
GAACATGGCAGCGACTGAGATCAAGTATATCGAGGATAAGGCGGCGACGG
AGATCAAGCTGGCAGCGACGGAGATGGTGCGCATCGAGGACATGGCGGCG
ACGGAGATGGTACGTCTCCAGAACAAGGCGGCGACGGACATCGCGCGCAT
CGAGGGCGAGCGAAGGTTGTCGGAAGAGCGTTTGAGGGCGGAGGTGGAGC
TGTACAGATATGATATGCGCGGTCCTAGATCATATTTGTACAACTCCACC
TCCGCCCTCAAACGCTCTTCCGACAACCTTCGCTCGCCCTCGATGCGCGC
GATGTCCGTCGCCGCCTTGTTCTGGAGACGTACCATCTCCGTCGCCGCCA
TGTCCTCGATGCGCACCATCTCCGTCGCCGCCTTATCCTCGATATACTTG
ATCTCAGTCGCTGCCATGTTCCGGTCGAAATGA
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Coding sequence (CDS) from alignment at chr25:621013..621995+

>NO25G02000.1 ID=NO25G02000.1|Name=NO25G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr25:621013..621995+ (Nannochloropsis oceanica)
ATGATACATTTGAAATGGTTTAAAGTATCTGTAGCTGTCTTCGGCTTGAT
GGTCGCAGTTTCTGGCTCTATCGCGTACGGCGTCCATCATTTCGACGAGA
ACATGGCAGCGACTGAGATCAAGTATATCGAGGATAAGGCGGCGACGGAG
ATCAAGCTGGCAGCGACGGAGATGGTGCGCATCGAGGACATGGCGGCGAC
GGAGATGGTACGTCTCCAGAACAAGGCGGCGACGGACATCGCGCGCATCG
AGGGCGAGCGAAGGTTGTCGGAAGAGCGTTTGAGGGCGGAGGTGGAGCTG
TACAGATATGATATGCGCGGTCCTAGATCATATTTGTACAACTCCACCTC
CGCCCTCAAACGCTCTTCCGACAACCTTCGCTCGCCCTCGATGCGCGCGA
TGTCCGTCGCCGCCTTGTTCTGGAGACGTACCATCTCCGTCGCCGCCATG
TCCTCGATGCGCACCATCTCCGTCGCCGCCTTATCCTCGATATACTTGAT
CTCAGTCGCTGCCATGTTCCGGTCGAAATGA
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Synonyms
Publications