NO25G01900, NO25G01900 (gene) Nannochloropsis oceanica

Overview
NameNO25G01900
Unique NameNO25G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2012
Alignment locationchr25:572632..574643 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:572632..574643 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018714DUF2237
Homology
BLAST of NO25G01900 vs. NCBI_GenBank
Match: EWM21702.1 (Protein of unknown function DUF2237 [Nannochloropsis gaditana])

HSP 1 Score: 321.2 bits (822), Expect = 2.900e-84
Identity = 164/230 (71.30%), Postives = 186/230 (80.87%), Query Frame = 0
Query:    1 MIPCSRRAATASSFTILVSLAFASSRFFRPAQAFLVFRPASSPFNLLVAAATPTGPGKE-GSNASPQPAFIRSLFTDVEERRKKEQASISENVQANAAERLQEAKMRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPAS 230
            M PC+R+ A   SFT + SL   SS   R A  FL  R AS+ FN+ VA ATP+G   E  +    Q AF+RSLFTDV ERR KEQASI    +A AA+RL+ AKMRGEINVLGGPLELC TDPMTGFTREGCCTTGPMDLGSHTVCAVV++DFLRYSK+RGNDLMTPRP++SFPGLK GD+WCLCASRWAEAYDEGVAC+V LK+THIKALDVC+L+ALIEHAL+PP S
Sbjct:    1 MRPCARK-ADIKSFTTIASLFLLSSLSTRSAYGFLALRQASASFNVCVAGATPSGKADEKPTPPQGQSAFVRSLFTDVAERRDKEQASIKAEAKAAAAQRLEAAKMRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPPPS 229          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_091504744.1 (DUF2237 domain-containing protein [Amycolatopsis sacchari] >SFI99953.1 hypothetical protein SAMN05421835_102457 [Amycolatopsis sacchari])

HSP 1 Score: 178.7 bits (452), Expect = 2.400e-41
Identity = 81/124 (65.32%), Postives = 98/124 (79.03%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            M  + NVLGG LE C +DP+TGF REGCCTTGP DLG+HTVCAVVT++FL YS   GNDL+TPRP++ FPGL++GD+WC+ A+RW EAY+ GVA  V L STH +AL+V DL AL EHA D PA
Sbjct:    1 MANDRNVLGGELEPCGSDPVTGFYREGCCTTGPDDLGNHTVCAVVTKEFLEYSLKVGNDLLTPRPEYDFPGLQAGDRWCIVAARWQEAYEAGVAPPVALASTHERALEVVDLDALREHAADVPA 124          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_091851871.1 (DUF2237 domain-containing protein [Marinobacter segnicrescens] >SET45163.1 hypothetical protein SAMN04487962_1104 [Marinobacter segnicrescens])

HSP 1 Score: 176.8 bits (447), Expect = 9.000e-41
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 0
Query:  109 INVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALD 226
            INVLG PLE C TDP+TGF R+GCC TGP D GSHTVCAVVT++FL +S+SRGNDL TPRP+F FPGL+ GD WCLCA+RW EA + G A  V LK+TH  ALD+CDL+ L  H++D
Sbjct:    9 INVLGEPLEDCGTDPVTGFFRDGCCNTGPEDFGSHTVCAVVTDEFLAFSRSRGNDLSTPRPEFGFPGLRPGDGWCLCAARWREALEAGCAPRVRLKATHRAALDICDLADLKRHSVD 125          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: OLB79803.1 (hypothetical protein AUI14_09155 [Actinobacteria bacterium 13_2_20CM_2_71_6])

HSP 1 Score: 176.4 bits (446), Expect = 1.200e-40
Identity = 78/124 (62.90%), Postives = 97/124 (78.23%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            M G+ NVLGG LE C TDP+TGF R+GCC+TGP DLGSHTVCAVVT +FL + +  GNDL+TPRP+F FPGL+ GD+WC+ A RW EAY+ GVA  V+L +TH +A+D+  L AL EHA+D PA
Sbjct:    1 MTGDRNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGSHTVCAVVTAEFLAHQRRTGNDLITPRPEFRFPGLQPGDRWCVVAIRWLEAYEAGVAAPVVLAATHARAVDIVPLEALREHAVDVPA 124          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_044883107.1 (MULTISPECIES: DUF2237 domain-containing protein [Frankia] >KJE25164.1 hypothetical protein FF36_00297 [Frankia sp. CpI1-S] >KQC37712.1 hypothetical protein UK82_13865 [Frankia sp. ACN1ag] >KQM08020.1 hypothetical protein FF86_1001276 [Frankia sp. CpI1-P])

HSP 1 Score: 175.3 bits (443), Expect = 2.600e-40
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            M  E NVLGG LE C TDP+TGF R+GCC+TGP DLGSHTVCAVVT DFLR+ +  GNDL TPRP++SFPGL+ GD+WC+ A RW +AYD G A  V+L STH +AL+V  L AL  HA+D PA
Sbjct:    1 MAEERNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGSHTVCAVVTADFLRHQRQVGNDLSTPRPEYSFPGLRPGDRWCVVAVRWLQAYDAGAAAPVVLASTHERALEVIPLEALRAHAVDVPA 124          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_085949675.1 (MULTISPECIES: DUF2237 domain-containing protein [Frankia])

HSP 1 Score: 175.3 bits (443), Expect = 2.600e-40
Identity = 80/124 (64.52%), Postives = 96/124 (77.42%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            M  E NVLGG LE C TDP+TGF R+GCC+TGP DLG+HTVCAVVT DFLR+ +  GNDL TPRP++SFPGL+ GD+WC+ A RW +AYD GVA  V+L STH +AL+V  L AL  HA+D PA
Sbjct:    1 MAVERNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGNHTVCAVVTADFLRHQRQVGNDLSTPRPEYSFPGLRPGDRWCVVAVRWLQAYDAGVAAPVVLASTHERALEVIPLEALRAHAVDVPA 124          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: CAJ62447.1 (conserved hypothetical protein [Frankia alni ACN14a])

HSP 1 Score: 174.9 bits (442), Expect = 3.400e-40
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0
Query:  108 EINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            E NVLGG LE C TDP+TGF R+GCC+TGP DLG+HTVCAVVT DFLR+ +  GNDL TPRP++SFPGL+ GD+WC+ A RW +AYD GVA  V+L STH +AL+V  L AL  HA+D PA
Sbjct:    2 ERNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGNHTVCAVVTADFLRHQRQVGNDLSTPRPEYSFPGLRPGDRWCVVAVRWLQAYDAGVAAPVVLASTHERALEVIPLEALRAHAVDVPA 122          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_045875229.1 (DUF2237 domain-containing protein [Frankia sp. DC12])

HSP 1 Score: 174.9 bits (442), Expect = 3.400e-40
Identity = 78/124 (62.90%), Postives = 99/124 (79.84%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            M  E NVLGGPLE C TDPMTGF+R+GCCT+GP DLGSHTVCAVVT++FL + +  GNDL TPRP+++FPGL+ GD+WC+ A+RW +AY  GVA  V+L ST+ +AL++  L AL EHA+D PA
Sbjct:    1 MTDERNVLGGPLEPCGTDPMTGFSRDGCCTSGPEDLGSHTVCAVVTKEFLDHQREVGNDLSTPRPEWAFPGLRPGDRWCVVAARWLQAYRAGVAAPVVLASTNARALELVPLDALREHAVDVPA 124          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_048387262.1 (DUF2237 domain-containing protein [Marinobacter psychrophilus] >AKO53484.1 hypothetical protein ABA45_14530 [Marinobacter psychrophilus])

HSP 1 Score: 173.7 bits (439), Expect = 7.600e-40
Identity = 75/116 (64.66%), Postives = 93/116 (80.17%), Query Frame = 0
Query:  110 NVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALD 226
            NV+G PLE+C  DP+TGF R+GCC TGP D+G+HTVCAVVT+DFL +S+SRGNDL   RP+F FPGLK+GD WCLCA RW EA D G A  V LK+TH+ AL+VCDL+ L +H++D
Sbjct:    9 NVIGEPLEVCGKDPVTGFFRDGCCNTGPEDMGNHTVCAVVTDDFLAFSRSRGNDLTEARPEFGFPGLKAGDGWCLCAGRWREALDAGCAPRVRLKATHLAALEVCDLADLKKHSVD 124          
BLAST of NO25G01900 vs. NCBI_GenBank
Match: WP_013425729.1 (DUF2237 domain-containing protein [Frankia inefficax] >ADP82611.1 Protein of unknown function DUF2237 [Frankia inefficax])

HSP 1 Score: 173.3 bits (438), Expect = 9.900e-40
Identity = 77/124 (62.10%), Postives = 99/124 (79.84%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLKSTHIKALDVCDLSALIEHALDPPA 229
            M  E NVLGGPLE C TDPMTGF+R+GCC++GP DLGSHTVCAVVT++FL + +  GNDL TPRP+++FPGL+ GD+WC+ A+RW +AY  GVA  V+L ST+ +AL++  L AL EHA+D PA
Sbjct:    1 MTDERNVLGGPLEPCGTDPMTGFSRDGCCSSGPEDLGSHTVCAVVTKEFLDHQREVGNDLSTPRPEWAFPGLRPGDRWCVVAARWLQAYRAGVAAPVVLASTNARALELVPLDALREHAVDVPA 124          
The following BLAST results are available for this feature:
BLAST of NO25G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21702.12.900e-8471.30Protein of unknown function DUF2237 [Nannochlorops... [more]
WP_091504744.12.400e-4165.32DUF2237 domain-containing protein [Amycolatopsis s... [more]
WP_091851871.19.000e-4166.67DUF2237 domain-containing protein [Marinobacter se... [more]
OLB79803.11.200e-4062.90hypothetical protein AUI14_09155 [Actinobacteria b... [more]
WP_044883107.12.600e-4064.52MULTISPECIES: DUF2237 domain-containing protein [F... [more]
WP_085949675.12.600e-4064.52MULTISPECIES: DUF2237 domain-containing protein [F... [more]
CAJ62447.13.400e-4065.29conserved hypothetical protein [Frankia alni ACN14... [more]
WP_045875229.13.400e-4062.90DUF2237 domain-containing protein [Frankia sp. DC1... [more]
WP_048387262.17.600e-4064.66DUF2237 domain-containing protein [Marinobacter ps... [more]
WP_013425729.19.900e-4062.10DUF2237 domain-containing protein [Frankia ineffic... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006401NSK006401Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01900.1NO25G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220491gene_8806Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100797g1gene8727Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01900.1NO25G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01900 ID=NO25G01900|Name=NO25G01900|organism=Nannochloropsis oceanica|type=gene|length=2012bp
AAACAACACAGAGATACGCATCGCTTGCCTGTGCGTGGTATCTCCACACT
TCGTTAAAGAGTCCCAGCAGTAAATGATCCCCTGCAGTCGCAGGGCAGCC
ACAGCGTCGTCCTTTACCATTCTCgtacgtacccttgcccgtcccatgca
ccgtttcatctccagggtagactcatcctgatggatttccaccacactta
tcagGTTTCGCTCGCCTTCGCCTCGTCCCGCTTTTTTCGCCCGGCCCAAG
CCTTTCTTGTGTTCCGTCCAGCCTCCTCTCCCTTCAACTTGCTAGTTGCT
GCAGCTACACCCACAGGCCCTGGCAAGGAGGGCTCGgtacgtcgtggcca
cgtattgccaaaggagtgaagccatggaaaagtgtggatctaatccatct
ctgactctcttctgcttgtctctcctcccttgcctcccttcttgcctcct
ccccctttcctcctacatatctagAACGCATCGCCCCAACCTGCCTTCAT
TCGATCCCTCTTCACGGACGTGGAAGAACGACGCAAGAAGGAACAAGgta
cgcatgtgtctgaaactgcggtaatcttatcctatgatcttttacctcct
cctttcctacggaatcctgttcataagctgcctttcctcactgctctccc
cccctccctctctccctccatacctcctctcttccctcccccctcaagCC
TCTATCAGTGAAAACGTCCAAGCCAACGCTGCCGAGCGCTTGCAAGAGGC
TAAAATGCGGGGAGAGATAAATGTGCTAGGCGGGCCGTTGGAGgtgagga
tttccttgtgtgcactatgactactttccaatacgaggaaactcagaatg
gcttccctgccttcccttcccctctttaatctgtagCTCTGCAGCACTGA
TCCCATGACGGGTTTCACTCGGGAAGGCTGTTGTACCACCGGGCCGATGG
ACCTGGGCTCGCACACGgtgagggcgggggggtggaaagggggtgcggag
gggagtgagaggattccctggtttagtcaatgcccctcgagacagcaggt
ggagggctaggcaccgtgggagggccatgccgcaatgaatgctccgtgac
cttgatatgtgtatcgcacattatgaactcgatatgtcgatcccacactg
ccattcaccgccccttccgtccctccgtccctccgtccctccgtctagGT
CTGTGCCGTGGTGACGGAGGATTTCCTCCGGTATTCGAAGTCGCGTGGTA
ACGATCTAATGACGCCACGGCCCGATTTTTCGTTTCCAGGACTCAAGgta
gggagggacgggagggagggaaagaaggagggaaggagggaggaaggagg
ggggggggaggcagggtggattcatcgagctagcgttggctctatctcat
cgtccctcacattcctcccttcccaacccctcccattcgacaaatgttgt
cctttcctttccctcccttcctttccatccctcagAGTGGAGACAAGTGG
TGCCTGTGTGCCTCGCGGTGGGCCGAGGCCTACGACGAGGGGGTGGCGTG
CTCGGTCCTTCTCAAATCGACGCATATCAAGGCCCTGGATGTCTGCGATT
TGTCGGCATTAATCGAACATGCCTTGGATCCGCCCGCGTCGCACACTAAG
GACGCAGCGGGAGGAGGGAAGGAGGGGGGAGGAGGAGGAGGAGGGGGAGG
GAAAGAGGAGGGAGGGAAGGAACTCCCGCCGCGGAAGCAGGAGGAGTTGT
AAACGCCAAAGGTGGTAAGGGTTTGGAGTCAAGAATGGAAGGATGTGATT
GAGAAAGAAGCAAGCAGGCATATCAACTCCCGTTGGCACAGTTTTGTCTT
TGTCTTTGTGTTGTTTTGCTTTTCTAGTAACGTTTCTTCAGGGAGATCAA
TCCAGGACCAGGACAAGAGTATTGTAGCGATCCCTAGCAGGAGAGGAGAG
GAAGGAGGCAGGTCTCTCGATTTGCAGCATATACACAAGAAACATTGAAA
ATGGAAGCCCAA
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protein sequence of NO25G01900.1

>NO25G01900.1-protein ID=NO25G01900.1-protein|Name=NO25G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MIPCSRRAATASSFTILVSLAFASSRFFRPAQAFLVFRPASSPFNLLVAA
ATPTGPGKEGSNASPQPAFIRSLFTDVEERRKKEQASISENVQANAAERL
QEAKMRGEINVLGGPLELCSTDPMTGFTREGCCTTGPMDLGSHTVCAVVT
EDFLRYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACS
VLLKSTHIKALDVCDLSALIEHALDPPASHTKDAAGGGKEGGGGGGGGGK
EEGGKELPPRKQEEL*
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Synonyms
Publications