NO25G01840.1, NO25G01840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01840.1
Unique NameNO25G01840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1609
Alignment locationchr25:550607..552558 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:550607..552558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01840.1 vs.
Match: EWM21694.1 (mitochondrial substrate carrier family protein [Nannochloropsis gaditana])

HSP 1 Score: 374.0 bits (959), Expect = 5.200e-100
Identity = 201/291 (69.07%), Postives = 228/291 (78.35%), Query Frame = 0 
Query:   16 GLRDLRQLEQSINVIPYR------PRQSDST--DDASIPAIGQHSEEKIKASPALKAFAGSAGGLVEAVTLQPVDTIKTRMQLHPTLYPSMIQTAKRITAEESVPALWKGLTPFATHLFSKYALRFGTNATFQSLLTDKETGVLSTSRRLLAGLGAGITEAILIVTPFDVVKVRLQAQHGLDKSLLQYHGPVDAARKIVSQEGWGALWSGVTPTICRNGIQQASMFYLKQLIDEEVWGLNTPAAGGKEGVKEGGVVERGKKLTVWQSMMSGFMASCPGLVMTNPFDIVKTR 299
            GLRDLR LE  + VIPYR      P  S S    D +IP +     ++ KASP LKA AGS GGLVEA+ LQPVDTIKTRMQ+ PT YPSMI+TA++I +EESVPALWKGLTPFATHLFSKYALRFGTNA FQS+LTD ETG LS+SRRLLAGLGAG+TEAILIVTPFDVVKVRLQAQHG+DK+ L+Y GP+DAARKI+SQEG GALWSGVTPTI RNGIQQA+MF+LK  ID+ V G+       K   K+G   +  ++  VWQSM SGFMASCPGLVMTNP DIVK R
Sbjct:   56 GLRDLRPLESPLKVIPYRHVLPTSPHTSHSPPPSDDAIPVV---ERQRQKASPLLKALAGSMGGLVEAIALQPVDTIKTRMQILPTSYPSMIKTAQKIASEESVPALWKGLTPFATHLFSKYALRFGTNAAFQSILTDSETGKLSSSRRLLAGLGAGVTEAILIVTPFDVVKVRLQAQHGMDKANLKYQGPLDAARKIISQEGVGALWSGVTPTIYRNGIQQATMFFLKTWIDDNVLGVR------KSLTKDG---QETRQPQVWQSMASGFMASCPGLVMTNPLDIVKVR 334
The following BLAST results are available for this feature:
BLAST of NO25G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21694.15.200e-10069.07mitochondrial substrate carrier family protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01840NO25G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01840.1NO25G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01840.1.cds1NO25G01840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01840.1.cds2NO25G01840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01840.1.cds3NO25G01840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01840.1 ID=NO25G01840.1|Name=NO25G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp
TCCCTCTTTTGAGCAGTGGACGCACATCATTGCTGACAGGAACTGCGACA
AGGCTCTATTCAAAATTACGCGCCTCCTGCGCCGCACTTTACAAGTGCAA
CCCCGAGCCGCTCGCTCAACGACTCGCTCGTTGACGCATGCGTTCGTTCA
TCCGTCTTCAAAAGGAGTTGAGGTCCCGACTGGGACCCCGTCGAGATGTG
CTTTTTCCATTCCCTGCGGCCTTTCGAAACCCTCATGCGCGTGAAAATTT
TGCTGGGTATTAAACGCCTTAAAAATAAGTCTCGCACCCCTGCTTGATCC
AACGGCCTCGTCCCGCAAAGTGGGTATCCCCCACCAGCGCCCGGTGACCA
CGATAGGGCGCTGTCCTCCCCAAAACCTAGTGTTTCCCACGCTCTCATTA
CCTTACCCACCTACAGGCACAAGCGACACCACCAAATCCTCAAGCATCCC
TCAAACCTCGACCAGGCGGACATGCCCGACTCTTCCAATGCCACCGATTA
CCCTGCATATATTGCCGGCCTCCGGGACTTGCGCCAACTCGAACAGTCTA
TCAATGTAATCCCTTATCGGCCCCGTCAGAGCGATTCTACTGACGACGCC
TCCATCCCCGCCATCGGCCAGCATAGCGAAGAGAAGATCAAGGCCTCCCC
GGCCCTCAAGGCCTTTGCCGGGAGCGCTGGGGGGCTTGTCGAGGCTGTTA
CCCTGCAACCTGTCGATACCATAAAGACAAGAATGCAGCTTCATCCGACC
CTGTACCCGTCCATGATTCAGACGGCCAAAAGAATAACTGCCGAGGAGTC
CGTGCCTGCCTTGTGGAAGGGTCTCACGCCGTTTGCCACGCACTTGTTCA
GCAAATATGCCTTGCGGTTTGGGACGAACGCCACCTTTCAATCATTGCTG
ACAGATAAGGAGACCGGCGTTCTCTCGACCTCCCGCCGTCTTCTCGCGGG
CCTTGGGGCGGGGATTACCGAAGCGATCCTGATAGTGACCCCTTTCGACG
TCGTCAAGGTGAGGCTACAGGCCCAACATGGCCTGGACAAGTCTCTCCTT
CAGTACCACGGACCGGTGGACGCCGCCCGGAAAATCGTCTCTCAGGAGGG
ATGGGGGGCGTTGTGGTCAGGGGTGACTCCCACCATCTGCAGGAACGGGA
TCCAGCAAGCGTCGATGTTTTATTTGAAGCAGCTGATTGACGAGGAGGTG
TGGGGCTTGAACACACCGGCGGCAGGAGGGAAGGAGGGCGTGAAGGAGGG
AGGGGTGGTGGAGAGGGGGAAAAAGCTGACGGTGTGGCAGTCGATGATGT
CGGGATTTATGGCGTCATGTCCCGGCCTGGTGATGACCAATCCCTTCGAC
ATTGTCAAGACCCGCCTCGCCCTTCAAGCGAAAAAAGGCCGGCCTGTCTA
CACGGGCGTGGCCCATGCGCTCTACACCATCGCCACGCAAGAAGGCATCC
CTACCCTGTACCGCGGCTTGCTTCCGCGCCTCCTGCGGGTGCCACCCGGC
ATGGCCGTGACATGGGGAGTCTCGGACCAGCTCGTCCAGTGGGTGGAGAA
GTAATTTAAGGCGGGTAAAGGAGAGATGGAGGGAGGGTGAGGGAGGGAGA
AAGTGAGGG
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protein sequence of NO25G01840.1

>NO25G01840.1-protein ID=NO25G01840.1-protein|Name=NO25G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MPDSSNATDYPAYIAGLRDLRQLEQSINVIPYRPRQSDSTDDASIPAIGQ
HSEEKIKASPALKAFAGSAGGLVEAVTLQPVDTIKTRMQLHPTLYPSMIQ
TAKRITAEESVPALWKGLTPFATHLFSKYALRFGTNATFQSLLTDKETGV
LSTSRRLLAGLGAGITEAILIVTPFDVVKVRLQAQHGLDKSLLQYHGPVD
AARKIVSQEGWGALWSGVTPTICRNGIQQASMFYLKQLIDEEVWGLNTPA
AGGKEGVKEGGVVERGKKLTVWQSMMSGFMASCPGLVMTNPFDIVKTRLA
LQAKKGRPVYTGVAHALYTIATQEGIPTLYRGLLPRLLRVPPGMAVTWGV
SDQLVQWVEK*
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mRNA from alignment at chr25:550607..552558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01840.1 ID=NO25G01840.1|Name=NO25G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at chr25:550607..552558- (Nannochloropsis oceanica)
TCCCTCTTTTGAGCAGTGGACGCACATCATTGCTGACAGGAACTGCGACA
AGGCTCTATTCAAAATTACGCGCCTCCTGCGCCGCACTTTACAAGTGCAA
CCCCGAGCCGCTCGCTCAACGACTCGCTCGTTGACGCATGCGTTCGTTCA
TCCGTCTTCAAAAGGAGTTGAGGTCCCGACTGGGACCCCGTCGAGATGTG
CTTTTTCCATTCCCTGCGGCCTTTCGAAACCCTCATGCGCGTGAAAATTT
TGCTGGGTATTAAACGCCTTAAAAATAAGTCTCGCACCCCTGCTTGATCC
AACGGCCTCGTCCCGCAAAGTGGGTATCCCCCACCAGCGCCCGGTGACCA
CGATAGGGCGCTGTCCTCCCCAAAACCTAGTGTTTCCCACGCTCTCATTA
CCTTACCCACCTACAGGCACAAGCGACACCACCAAATCCTCAAGCATCCC
TCAAACCTCGACCAGGCGGACATGCCCGACTCTTCCAATGCCACCGATTA
CCCTGCATATATTGCCGGCCTCCGGGACTTGCGCCAACTCGAACAGTCTA
TCAATGTAATCCCTTATCGGCCCCGTCAGAGCGATTCTACTGACGACGCC
TCCATCCCCGCCATCGGCCAGCATAGCGAAGAGAAGATCAAGGCCTCCCC
GGCCCTCAAGGCCTTTGCCGGGAGCGCTGGGGGGCTTGTCGAGGCTGTTA
CCCTGCAACCTGTCGATACCATAAAGACAAGAATGCAGCTTCATCCGACC
CTGTACCCGTCCATGATTCAGACGGCCAAAAGAATAACTGCCGAGGAGTC
CGTGCCTGCCTTGTGGAAGGGTCTCACGCCGTTTGCCACGCACTTGTTCA
GCAAATATGCCTTGCGGTTTGGGACGAACGCCACCTTTCAATCATTGCTG
ACAGATAAGGAGACCGGTACGTGAAGAATGGAGTGAAGAGGGGTAGGGAG
GGAAGAACAGAGAAGGTGCTTGCGATGTAGGAACAAGGGAAGGGGAAAGG
GCGGGGGGAAAGGAAGGGATTTGACTGTTAACAGAGGGTGCTCGTCCTTC
TTTGTCGTTTACTCATGTATTCTTCCTCCCCCCTCCCTCCCTCCCACCCT
CCCTCCCTCCTCCCTCCTCACAGGCGTTCTCTCGACCTCCCGCCGTCTTC
TCGCGGGCCTTGGGGCGGGGATTACCGAAGCGATCCTGATAGTGACCCCT
TTCGACGTCGTCAAGGTGAGGCTACAGGCCCAACATGGCCTGGACAAGTC
TCTCCTTCAGTACCACGGACCGGTGGACGCCGCCCGGAAAATCGTCTCTC
AGGAGGGATGGGGGGCGTTGTGGTCAGGGGTGACTCCCACCATCTGCAGG
AACGGGATCCAGCAAGCGTCGATGTTTTATTTGAAGCAGCTGATTGACGA
GGAGGTGTGGGGCTTGAACACACCGGCGGCAGGAGGGAAGGAGGGCGTGA
AGGAGGGAGGGGTGGTGGAGAGGGGGAAAAAGCTGACGGTGTGGCAGTCG
ATGATGTCGGGATTTATGGCGTCATGTCCCGGCCTGGTGATGACCAATCC
CTTCGACATTGTCAAGGTAAGACGAAGACAATGGAATGAGACAGGAGCAG
GAGGAGGAGGAGGAACTCGATGCCCCTCGCTTGCATGCCCGCGATTTAGC
CGTCCTCCCTTCCCTCCCTCTCACCCTCCCTCCCTTTCTCTCCTCCCCTT
AGACCCGCCTCGCCCTTCAAGCGAAAAAAGGCCGGCCTGTCTACACGGGC
GTGGCCCATGCGCTCTACACCATCGCCACGCAAGAAGGCATCCCTACCCT
GTACCGCGGCTTGCTTCCGCGCCTCCTGCGGGTGCCACCCGGCATGGCCG
TGACATGGGGAGTCTCGGACCAGCTCGTCCAGTGGGTGGAGAAGTAATTT
AAGGCGGGTAAAGGAGAGATGGAGGGAGGGTGAGGGAGGGAGAAAGTGAG
GG
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Coding sequence (CDS) from alignment at chr25:550607..552558-

>NO25G01840.1 ID=NO25G01840.1|Name=NO25G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr25:550607..552558- (Nannochloropsis oceanica)
ATGCCCGACTCTTCCAATGCCACCGATTACCCTGCATATATTGCCGGCCT
CCGGGACTTGCGCCAACTCGAACAGTCTATCAATGTAATCCCTTATCGGC
CCCGTCAGAGCGATTCTACTGACGACGCCTCCATCCCCGCCATCGGCCAG
CATAGCGAAGAGAAGATCAAGGCCTCCCCGGCCCTCAAGGCCTTTGCCGG
GAGCGCTGGGGGGCTTGTCGAGGCTGTTACCCTGCAACCTGTCGATACCA
TAAAGACAAGAATGCAGCTTCATCCGACCCTGTACCCGTCCATGATTCAG
ACGGCCAAAAGAATAACTGCCGAGGAGTCCGTGCCTGCCTTGTGGAAGGG
TCTCACGCCGTTTGCCACGCACTTGTTCAGCAAATATGCCTTGCGGTTTG
GGACGAACGCCACCTTTCAATCATTGCTGACAGATAAGGAGACCGGCGTT
CTCTCGACCTCCCGCCGTCTTCTCGCGGGCCTTGGGGCGGGGATTACCGA
AGCGATCCTGATAGTGACCCCTTTCGACGTCGTCAAGGTGAGGCTACAGG
CCCAACATGGCCTGGACAAGTCTCTCCTTCAGTACCACGGACCGGTGGAC
GCCGCCCGGAAAATCGTCTCTCAGGAGGGATGGGGGGCGTTGTGGTCAGG
GGTGACTCCCACCATCTGCAGGAACGGGATCCAGCAAGCGTCGATGTTTT
ATTTGAAGCAGCTGATTGACGAGGAGGTGTGGGGCTTGAACACACCGGCG
GCAGGAGGGAAGGAGGGCGTGAAGGAGGGAGGGGTGGTGGAGAGGGGGAA
AAAGCTGACGGTGTGGCAGTCGATGATGTCGGGATTTATGGCGTCATGTC
CCGGCCTGGTGATGACCAATCCCTTCGACATTGTCAAGACCCGCCTCGCC
CTTCAAGCGAAAAAAGGCCGGCCTGTCTACACGGGCGTGGCCCATGCGCT
CTACACCATCGCCACGCAAGAAGGCATCCCTACCCTGTACCGCGGCTTGC
TTCCGCGCCTCCTGCGGGTGCCACCCGGCATGGCCGTGACATGGGGAGTC
TCGGACCAGCTCGTCCAGTGGGTGGAGAAGTAA
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Synonyms
Publications