NO25G01790.1, NO25G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01790.1
Unique NameNO25G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr25:535287..536876 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:535287..536876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01790.1 vs.
Match: EWM21687.1 (hypothetical protein Naga_101740g1 [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 3.700e-40
Identity = 88/149 (59.06%), Postives = 108/149 (72.48%), Query Frame = 0 
Query:  132 MLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKGRQDDVMYAYPRLHL 281
            MLYY  +  EA+EQLD+A  RYE  +EQ ATEE +WRAA L + HG E G  ++ S PPSP+G E R+LMG V  LF+G V+EE VLA++E AR+NPYGNY LYG FY+GL+ DA G  G A AAM +A  A + RQDDVMY +PRLHL
Sbjct:    1 MLYYNQKYPEALEQLDRAIDRYETLYEQVATEERVWRAAVLSRYHGRETGLAKIRSSPPSPYGTETRRLMGAVLDLFEGRVEEEEVLAMVEEARSNPYGNYDLYGFFYIGLYRDACGLAGPARAAMEQATRALRARQDDVMYHFPRLHL 149
The following BLAST results are available for this feature:
BLAST of NO25G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21687.13.700e-4059.06hypothetical protein Naga_101740g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01790NO25G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01790.1NO25G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01790.1.cds1NO25G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01790.1.cds2NO25G01790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01790.1.cds3NO25G01790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01790.1.cds4NO25G01790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01790.1.cds5NO25G01790.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01790.1 ID=NO25G01790.1|Name=NO25G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGCAGCTGTCGTCCTTCCCTGCCTCCTATATCTTCCTCCTCCTGACCAC
CGCAGCGCTTCCCGTTGTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCT
CCTCCTCGATTTCCTCGGGCCTACCGCGCCCTCATCATCTCCATGTACAG
CACGGCCCGCCCCCTTTGTGGATGGGCGGGAAATGGGTCAAAGACCCCAG
TATTGCACAAGGCATCGCGGATATGGTAAAGAATTTCCAGCAGAAGAAGC
ACGCACAGACGGAGACGGTGGACCGGTACTTGCAGGACGGCATAGAGGGA
ATCAAGCTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTT
GAAAATGGACAACGAAACTGGCTTGTTGTGGCACCACGGAGCCATGCTCT
ACTATCTCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGACAAGGCCTCT
GCCCGTTACGAGGAGCAGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTG
GCGCGCCGCCGCCTTACTAAAACTTCACGGTGCCGAGGAAGGTCAACGGC
GACTGTCCTCCCTCCCGCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTC
ATGGGACTCGTGGCCGGATTGTTCAAAGGCGAGGTGGATGAAGAGACAGT
CCTGGCTGTGTTGGAGGGCGCAAGGGCCAATCCCTATGGGAACTACGCAT
TGTACGGTAACTTTTACCTGGGCCTGTGGCATGACGCGTCGGGGAGGCCA
GGAGAGGCGGTGGCAGCGATGGGGCGGGCCATGGAGGCTCCCAAGGGGAG
GCAGGACGATGTCATGTATGCCTACCCACGCCTCCACCTCAAGTGTGCGA
AACATGGTTGA
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protein sequence of NO25G01790.1

>NO25G01790.1-protein ID=NO25G01790.1-protein|Name=NO25G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MQLSSFPASYIFLLLTTAALPVVHSFILPSSSSSSSISSGLPRPHHLHVQ
HGPPPLWMGGKWVKDPSIAQGIADMVKNFQQKKHAQTETVDRYLQDGIEG
IKLLEPSLALAAFETALKMDNETGLLWHHGAMLYYLDRPKEAVEQLDKAS
ARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQL
MGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRP
GEAVAAMGRAMEAPKGRQDDVMYAYPRLHLKCAKHG*
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mRNA from alignment at chr25:535287..536876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01790.1 ID=NO25G01790.1|Name=NO25G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at chr25:535287..536876+ (Nannochloropsis oceanica)
ATGCAGCTGTCGTCCTTCCCTGCCTCCTATATCTTCCTCCTCCTGACCAC
CGCAGCGCTTCCCGTTGTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCT
CCTCCTCGATTTCCTCGGGCCTACCGCGCCCTCATCATCTCCATGTACAG
CACGGCCCGCCCCCTTTGTGGATGGGCGGGAAATGGGTCAAAGACCCCAG
TATTGCACAAGGTACGAGGGGTTGGATGGAGGGAGGGCAGGGGTCACTAA
CTCCGCTTATCACTTGTGGTTCAGACAATATCAATGCGCATCAGTCTCTG
CACCTGCACGCAAATAGGCATCGCGGATATGGTAAAGAATTTCCAGCAGA
AGAAGCACGCACAGACGGAGACGGTGGACCGGTACTTGCAGGTGAGAGGG
AGGGAGGGAGGGAGGGAGAGAGCGTGAGAAGGAGGGGGGGAGGGAGGAAG
GAAGGACGGAGAGAAAAGTAAGGAGGCGAGGAATAAGATGCAGAACAGGA
TTCTCGTCATACTGGAAAATGGATGGATACGTGAGATGCGTGACATCACT
GCTGAGATTTTTCATTTCGACTTTAACTCCCTTTCTACAAGACCGCTGAC
CAGGAACCCCTCCCTCCCTCCCTGACTCATTCCATTTCTCCAAAGGACGG
CATAGAGGGAATCAAGCTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCG
AGACCGCCTTGAAAATGGACAACGAAACTGGCTTGTTGTGGCACCACGGA
GCCATGCTCTACTATCTCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGA
CAAGTACGTTTGGAGTCCACCCTCCCTCCCTCCCTTCCTCCCTCCTCCAC
TCTCCCCTCCTTTTTCCCTTTCTCTCCCTCTGTTTCTCCCTTAAAGCCTT
TTGACTATCCACACCGAGAGTCATGGGAGCGTATAGGTCCAGAAGAGGGC
ACGGGACGAGGACCAGCGCCCTCCCTCCCCCCCTCCAGTCTTCTCACCTC
CCTCCCTTCCTCCATTCCTCCCTTCCCTAGGGCCTCTGCCCGTTACGAGG
AGCAGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTGGCGCGCCGCCGCC
TTACTAAAACTTCACGGTGCCGAGGAAGGTCAACGGCGACTGTCCTCCCT
CCCGCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTCATGGGACTCGTGG
CCGGATTGTTCAAAGGCGAGGTGGATGAAGAGACAGTCCTGGCTGTGTTG
GAGGGCGCAAGGGTGAGGAGGAAGGGAGGGAGGGAGGGGGAAGGGAGGGA
GGGAGGGAGGGAATGAAAGGAAGAAACACGGACTTCGAACAAAGAAAAAG
CCGCTTACGTACCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCT
CCAGGCCAATCCCTATGGGAACTACGCATTGTACGGTAACTTTTACCTGG
GCCTGTGGCATGACGCGTCGGGGAGGCCAGGAGAGGCGGTGGCAGCGATG
GGGCGGGCCATGGAGGCTCCCAAGGGGAGGCAGGACGATGTCATGTATGC
CTACCCACGCCTCCACCTCAAGTGTGCGAAACATGGTTGA
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Coding sequence (CDS) from alignment at chr25:535287..536876+

>NO25G01790.1 ID=NO25G01790.1|Name=NO25G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr25:535287..536876+ (Nannochloropsis oceanica)
ATGCAGCTGTCGTCCTTCCCTGCCTCCTATATCTTCCTCCTCCTGACCAC
CGCAGCGCTTCCCGTTGTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCT
CCTCCTCGATTTCCTCGGGCCTACCGCGCCCTCATCATCTCCATGTACAG
CACGGCCCGCCCCCTTTGTGGATGGGCGGGAAATGGGTCAAAGACCCCAG
TATTGCACAAGGCATCGCGGATATGGTAAAGAATTTCCAGCAGAAGAAGC
ACGCACAGACGGAGACGGTGGACCGGTACTTGCAGGACGGCATAGAGGGA
ATCAAGCTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTT
GAAAATGGACAACGAAACTGGCTTGTTGTGGCACCACGGAGCCATGCTCT
ACTATCTCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGACAAGGCCTCT
GCCCGTTACGAGGAGCAGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTG
GCGCGCCGCCGCCTTACTAAAACTTCACGGTGCCGAGGAAGGTCAACGGC
GACTGTCCTCCCTCCCGCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTC
ATGGGACTCGTGGCCGGATTGTTCAAAGGCGAGGTGGATGAAGAGACAGT
CCTGGCTGTGTTGGAGGGCGCAAGGGCCAATCCCTATGGGAACTACGCAT
TGTACGGTAACTTTTACCTGGGCCTGTGGCATGACGCGTCGGGGAGGCCA
GGAGAGGCGGTGGCAGCGATGGGGCGGGCCATGGAGGCTCCCAAGGGGAG
GCAGGACGATGTCATGTATGCCTACCCACGCCTCCACCTCAAGTGTGCGA
AACATGGTTGA
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Synonyms
Publications