NO25G01790, NO25G01790 (gene) Nannochloropsis oceanica

Overview
NameNO25G01790
Unique NameNO25G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr25:535287..536876 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:535287..536876 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of NO25G01790 vs. NCBI_GenBank
Match: EWM21687.1 (hypothetical protein Naga_101740g1 [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 3.700e-40
Identity = 88/149 (59.06%), Postives = 108/149 (72.48%), Query Frame = 0
Query:  132 MLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKGRQDDVMYAYPRLHL 281
            MLYY  +  EA+EQLD+A  RYE  +EQ ATEE +WRAA L + HG E G  ++ S PPSP+G E R+LMG V  LF+G V+EE VLA++E AR+NPYGNY LYG FY+GL+ DA G  G A AAM +A  A + RQDDVMY +PRLHL
Sbjct:    1 MLYYNQKYPEALEQLDRAIDRYETLYEQVATEERVWRAAVLSRYHGRETGLAKIRSSPPSPYGTETRRLMGAVLDLFEGRVEEEEVLAMVEEARSNPYGNYDLYGFFYIGLYRDACGLAGPARAAMEQATRALRARQDDVMYHFPRLHL 149          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: CBN77475.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1 bits (209), Expect = 3.800e-13
Identity = 62/178 (34.83%), Postives = 89/178 (50.00%), Query Frame = 0
Query:  113 FETALKMDNETGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEG----QRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLE-GARANPYGNYALYGNFYLGLWHDASGRPGEA----VAAMGRAMEAPKGRQDDVMYAYPRLHLK 282
            + +A  +   +   W  G +LYYL R +EA  +LD     +E+QFE+ AT+E IW+AAA ++  GA E     ++  ++LPP P   E   L   V  +F+G    E V  V + GA    Y     +   +LGL+HDA G   EA    +AA G     P    DD+ Y  PR+H K
Sbjct:  121 YTSAADLSPPSARTWPLGVILYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIR--GAREAGADVEQVAAALPPLPI-SEPNALRRTVYNMFRGGPTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNP----DDLWYHTPRIHAK 291          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: XP_002295409.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64126.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.0 bits (175), Expect = 3.400e-9
Identity = 62/244 (25.41%), Postives = 103/244 (42.21%), Query Frame = 0
Query:   93 YLQDGIEGIKLLEPSLALAAFETALKMDNETGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLS--SLPPS---PFGE----------------EKRQLMGLVAGLFKGEVDEETVLAVLEGAR----------------------ANP---------YGNYALYGNFYLGLWHDASGRPGEAVAAMGRAME----APKGRQDDVMYAYPRLHL 281
            Y ++G+  ++ L  + A  +F     +  E   +W  G + YYLD  +   E L   + RYE +F +PA+EE IWR A  LK+  +  G+R++   S+P +   P GE                E+R+++ L   LF   + +      L  A+                       NP         +  Y L+  FYLGL++DA G+  E+   M  A++    +  G   D+ Y  P +H+
Sbjct:  154 YTEEGLTHLRQLRLAEAHESFNKVYSIKPE-AYVWQDGLLKYYLDEYEAGAESLANNAIRYETRFGEPASEERIWRDACELKIVSSLHGKRKVKDRSIPVAMRVPVGEEGEDNEEVVEGESIASERRKVIRLARQLFSSSLRDNPSGVALARAQLQAMCGDSFPSTLKSSLPKLSSTNPALPSSVQKDHKMYKLHSYFYLGLYYDALGKNRESKQCMKMAIKTCQNSISGNGSDITYLLPMIHM 396          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: KCW61830.1 (hypothetical protein EUGRSUZ_H04522 [Eucalyptus grandis])

HSP 1 Score: 71.6 bits (174), Expect = 4.400e-9
Identity = 54/177 (30.51%), Postives = 86/177 (48.59%), Query Frame = 0
Query:  109 ALAAFETALKMD-NETGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLA-VLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKG-RQDDVMYAYPRLHLKC 283
            +L  F+ A+++D  +   LW  G  LYYL+R KE  EQL     R +       TEE IW      +L+G +E ++R   +     G + R +M     LFK   D E ++A  L+G     + +   Y + Y GL+++A  +P  A   +  A ++P G R DD M +  ++H  C
Sbjct:  114 SLLEFDKAMELDPRQKAHLWQRGLSLYYLNRFKEGAEQL-----RIDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEV-----GRDPRPVMLEAYNLFKDGGDPEKLVAGFLDG-----WDSEYFYASLYAGLYYEAENKPEGAKRCIIAACQSPYGARSDDYMASLAKVHCLC 275          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: WP_027844535.1 (hypothetical protein [Mastigocoleus testarum] >KST68539.1 hypothetical protein BC008_01345 [Mastigocoleus testarum BC008] >KST68554.1 hypothetical protein BC008_01420 [Mastigocoleus testarum BC008])

HSP 1 Score: 70.5 bits (171), Expect = 9.800e-9
Identity = 54/189 (28.57%), Postives = 91/189 (48.15%), Query Frame = 0
Query:   93 YLQDGIEGIKLLEPSLALAAFETALKM-DNETGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGNYA-LYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKGRQDDVMYAYPRLH 280
            Y+Q G+   KL + + ++A F+ A K+  + T  LW  G   YY +R  E   Q +      +        EE +WR   + +L G++E ++ L S+   P     R +M  V  L+ G    E VL +      NP+   +  Y + Y+GL+ +AS R  EA + + +A+++   R DD M+   R+H
Sbjct:   32 YVQRGMVKFKLAQVNESIADFDAAEKLKPSITPYLWQRGLSYYYANRFAEGASQFE-----IDLTVNSQDVEETVWRYLCVARLQGSDEARKSLLSVKNDP-----RLVMRKVYELYGGNCSTEDVLKI-----GNPFDKRSKFYSHLYVGLYFEASDRTEEAQSYITKAVDS--YRIDDYMWYLARVH 203          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: XP_002177410.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51873.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.4 bits (163), Expect = 8.300e-8
Identity = 59/235 (25.11%), Postives = 101/235 (42.98%), Query Frame = 0
Query:   80 QQKKHAQTETVDRYL----QDGIEGIKLLEPSLALAAFETALKMDNETGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKL------------HGAEEGQRRLSSLPPSP-----FGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGN------------YALYGNFYLGLWHDASGRPGEAVAAMGRAME-APKGRQDDVMYAYPRLHL 281
            +Q+   Q   V+R +    + G++ +K+ +   AL +F+   ++  +   LW  G + YYL   K A +   + +  YE +F  PA+EE IWR A  +KL             G +     L+ +P           E R+ + +   LF+  V++     +L  A+    G             + L   FYLGL +DA G   E+   M  A+  +P G   D+++  P LH+
Sbjct:  102 EQEWLRQATNVEREIFLQTEKGLKLLKMFQLEEALESFDRVFELKPD-AYLWQAGIVKYYLGDLKGAADIFARNAQLYESRFFDPASEERIWRHACEIKLLSQFSKKERKQALGDKNSSIGLTQIPQRDQETEFLQSESRKAIRITRELFEATVEKNYSNTILSRAKLRSIGGAFEQEPRIDVKMWKLNSWFYLGLHYDALGEIEESKKCMKMALRLSPSGNGSDLIHTLPMLHM 335          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: GAX80175.1 (hypothetical protein CEUSTIGMA_g7613.t1 [Chlamydomonas eustigma])

HSP 1 Score: 67.0 bits (162), Expect = 1.100e-7
Identity = 53/185 (28.65%), Postives = 79/185 (42.70%), Query Frame = 0
Query:   97 GIEGIKLLEPSLALAAFETALKMDNE-TGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKGR-QDDVMYAYPRLH 280
            G+   +  E   +L  F  A+KM  E    LW  G  LYYL   +E  +Q      R +       TEE IW      +L GAEE + +   +     G + R +M      F+     + +LA    A     G+ A Y   Y+GLW++A  +P EA  A+  A+  P  R   D M +  ++H
Sbjct:   94 GMTKFRKNEVESSLEDFNAAMKMSPEMRPYLWQRGLSLYYLSSYEEGAKQF-----RDDVAVNPSDTEEAIWAFLCEAQLIGAEEARTQFLKV-----GRDSRPVMRAAYECFQSGTSPDAILAA-AAASMQTGGHDAFYSQLYVGLWYEAHNQPEEARKAILSAIATPYARLSGDYMVSLGKVH 267          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: XP_018716858.1 (PREDICTED: uncharacterized protein LOC104417708 [Eucalyptus grandis])

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7
Identity = 50/159 (31.45%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  126 LWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLA-VLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKG-RQDDVMYAYPRLHLKC 283
            LW  G  LYYL+R KE  EQL     R +       TEE IW      +L+G +E ++R   +     G + R +M     LFK   D E ++A  L+G     + +   Y + Y GL+++A  +P  A   +  A ++P G R DD M +  ++H  C
Sbjct:  137 LWQRGLSLYYLNRFKEGAEQL-----RIDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEV-----GRDPRPVMLEAYNLFKDGGDPEKLVAGFLDG-----WDSEYFYASLYAGLYYEAENKPEGAKRCIIAACQSPYGARSDDYMASLAKVHCLC 280          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: XP_005842304.1 (hypothetical protein GUITHDRAFT_62770 [Guillardia theta CCMP2712] >EKX55324.1 hypothetical protein GUITHDRAFT_62770 [Guillardia theta CCMP2712])

HSP 1 Score: 66.2 bits (160), Expect = 1.800e-7
Identity = 54/213 (25.35%), Postives = 98/213 (46.01%), Query Frame = 0
Query:   71 GIADMVKNFQQKKHAQTETVDRYLQDGIEGIKLLEPSLALAAFETALKMDNE-TGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLH-GAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKGRQDDVMYAYPRLHLK 282
            G   +V  F  +  A  +      + GI+         ++ AF+ A+++D+    +LW  G  LYY DR  EA +Q ++     + +     TEE IWR  +  +   G  + Q+++  +       E R+ M L+ G+ +G +    +  + E A ++ +     Y N Y GL  +A GRP  A   + RA+++P  ++ D M+    +H K
Sbjct:    9 GFGLLVTLFNTQAFAAVDDARTQYRKGIQDFVNGRVKESVEAFDRAIELDSTYADILWQRGLSLYYCDRFDEASKQFER-----DVRLNPRDTEEAIWRFFSQARTAVGFSDAQKQILRVE-----GETREYMKLIYGVCRGAI---PLQELEEKALSDQF-----YYNLYAGLIAEAQGRPAAAQNFLDRAVKSPYSKEGDYMWFVASVHCK 203          
BLAST of NO25G01790 vs. NCBI_GenBank
Match: PSC70340.1 (TPR repeat [Micractinium conductrix])

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7
Identity = 55/199 (27.64%), Postives = 87/199 (43.72%), Query Frame = 0
Query:   90 VDRYLQDGIEGIKLLEPSLALAAFETALKMDNE-TGLLWHHGAMLYYLDRPKEAVEQLDKASARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQLMGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRPGEAVAAMGRAMEAPKGRQD-DVMYAYPRLHLKCAKHG 287
            +D++ ++ +EG        ++A F+ AL         LW  G  LYYL + +E  +Q      R +       TEE IW      ++ GA++ + +   +     G + R +M      FK     E   A+L+ A  +  G+ A Y   Y+GLWH+A G    A AA+  A+    GR   D M A   +H  C + G
Sbjct:    1 MDKFRKNDVEG--------SVADFDAALAARAAMRPYLWQRGLSLYYLQQYEEGAQQF-----RDDVAVNPNDTEESIWAFLCEAQMVGADKARAQFLQV-----GRDPRPVMRAAYECFKTWAQPE---AILQAAGGDRQGHDAFYAQLYMGLWHEAHGNTEAAQAAITEAVRTLYGRSSGDYMAALAAVH--CQRRG 176          
The following BLAST results are available for this feature:
BLAST of NO25G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM21687.13.700e-4059.06hypothetical protein Naga_101740g1 [Nannochloropsi... [more]
CBN77475.13.800e-1334.83conserved unknown protein [Ectocarpus siliculosus][more]
XP_002295409.13.400e-925.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
KCW61830.14.400e-930.51hypothetical protein EUGRSUZ_H04522 [Eucalyptus gr... [more]
WP_027844535.19.800e-928.57hypothetical protein [Mastigocoleus testarum] >KST... [more]
XP_002177410.18.300e-825.11predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX80175.11.100e-728.65hypothetical protein CEUSTIGMA_g7613.t1 [Chlamydom... [more]
XP_018716858.11.400e-731.45PREDICTED: uncharacterized protein LOC104417708 [E... [more]
XP_005842304.11.800e-725.35hypothetical protein GUITHDRAFT_62770 [Guillardia ... [more]
PSC70340.12.400e-727.64TPR repeat [Micractinium conductrix][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01790.1NO25G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604029gene_8789Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101740g1gene8742Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01790.1NO25G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01790 ID=NO25G01790|Name=NO25G01790|organism=Nannochloropsis oceanica|type=gene|length=1590bp
ATGCAGCTGTCGTCCTTCCCTGCCTCCTATATCTTCCTCCTCCTGACCAC
CGCAGCGCTTCCCGTTGTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCT
CCTCCTCGATTTCCTCGGGCCTACCGCGCCCTCATCATCTCCATGTACAG
CACGGCCCGCCCCCTTTGTGGATGGGCGGGAAATGGGTCAAAGACCCCAG
TATTGCACAAGgtacgaggggttggatggagggagggcaggggtcactaa
ctccgcttatcacttgtggttcagacaatatcaatgcgcatcagtctctg
cacctgcacgcaaatagGCATCGCGGATATGGTAAAGAATTTCCAGCAGA
AGAAGCACGCACAGACGGAGACGGTGGACCGGTACTTGCAGgtgagaggg
agggagggagggagggagagagcgtgagaaggagggggggagggaggaag
gaaggacggagagaaaagtaaggaggcgaggaataagatgcagaacagga
ttctcgtcatactggaaaatggatggatacgtgagatgcgtgacatcact
gctgagatttttcatttcgactttaactccctttctacaagaccgctgac
caggaacccctccctccctccctgactcattccatttctccaaagGACGG
CATAGAGGGAATCAAGCTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCG
AGACCGCCTTGAAAATGGACAACGAAACTGGCTTGTTGTGGCACCACGGA
GCCATGCTCTACTATCTCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGA
CAAgtacgtttggagtccaccctccctccctcccttcctccctcctccac
tctcccctcctttttccctttctctccctctgtttctcccttaaagcctt
ttgactatccacaccgagagtcatgggagcgtataggtccagaagagggc
acgggacgaggaccagcgccctccctccccccctccagtcttctcacctc
cctcccttcctccattcctcccttccctagGGCCTCTGCCCGTTACGAGG
AGCAGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTGGCGCGCCGCCGCC
TTACTAAAACTTCACGGTGCCGAGGAAGGTCAACGGCGACTGTCCTCCCT
CCCGCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTCATGGGACTCGTGG
CCGGATTGTTCAAAGGCGAGGTGGATGAAGAGACAGTCCTGGCTGTGTTG
GAGGGCGCAAGGgtgaggaggaagggagggagggagggggaagggaggga
gggagggagggaatgaaaggaagaaacacggacttcgaacaaagaaaaag
ccgcttacgtacccccctccctccctccctccctccctccctcctcccct
ccagGCCAATCCCTATGGGAACTACGCATTGTACGGTAACTTTTACCTGG
GCCTGTGGCATGACGCGTCGGGGAGGCCAGGAGAGGCGGTGGCAGCGATG
GGGCGGGCCATGGAGGCTCCCAAGGGGAGGCAGGACGATGTCATGTATGC
CTACCCACGCCTCCACCTCAAGTGTGCGAAACATGGTTGA
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protein sequence of NO25G01790.1

>NO25G01790.1-protein ID=NO25G01790.1-protein|Name=NO25G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MQLSSFPASYIFLLLTTAALPVVHSFILPSSSSSSSISSGLPRPHHLHVQ
HGPPPLWMGGKWVKDPSIAQGIADMVKNFQQKKHAQTETVDRYLQDGIEG
IKLLEPSLALAAFETALKMDNETGLLWHHGAMLYYLDRPKEAVEQLDKAS
ARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQL
MGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRP
GEAVAAMGRAMEAPKGRQDDVMYAYPRLHLKCAKHG*
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Synonyms
Publications