NO25G01650.1, NO25G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01650.1
Unique NameNO25G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1455
Alignment locationchr25:460251..462378 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:460251..462378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G01650.1 vs.
Match: EWM21668.1 (60s acidic ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 172.9 bits (437), Expect = 5.900e-40
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0 
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYYPAFFASMIEKAGGKLDKFMGAPGA-GGGGAAAAAPAAAAA--AAPEAGKKEKKEEKEEEADLGGASMFGGDGY 121
            MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENL+AV+KASGNTVAAYYPA +AS+IEKAGGKLDKFMGAPGA GGGG  A APAAAAA  AAPEA KKEKKEE EEEADLG  +MFGGDGY
Sbjct:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEA-KKEKKEE-EEEADLGAGNMFGGDGY 121
The following BLAST results are available for this feature:
BLAST of NO25G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21668.15.900e-4086.9960s acidic ribosomal protein [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01650NO25G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01650.1NO25G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01650.1.cds1NO25G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01650.1.cds2NO25G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01650.1 ID=NO25G01650.1|Name=NO25G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGCTCACTTTCCCC
GTCGTCGTCATCGTCATTGTCGCTTCCTTCGCGGTTCTTAGCCGCCATCT
GCTCTTCAATTACGGTCTTGAGCTGCTCCTGGTACTCAGGCTATTTCATA
GAGAAGTGTTTGGTGAGCTCGAGTCCAGCTACAGGCCCTTCCTCTCTGCC
TTGCCTTCCTCCCTACACTCCCCTCCTCATAATTGTACGTACCGACAAGG
CCAGGATTTGATGGATACTTTGTGAGCGTTTTGGTACCTTTGAGCCTACG
GCGGCGCCCAGGAAGGTTTCGAGGACGGCGGGGAGCATGGACAAAGGCAT
GAGAAAGGACGAAGAAGGGGAGGAGGAAGACGACGCAAGCTTAGCGGCGA
TGGCCCGGGGGAGGGTAGGACGAAGGAAGGGCAAAAGGGCTTTCCAGCAT
CGCTTGATATCCTCCTCCTCACCCTCCTCAGTCTTGTCGTCCCGCGTGCC
TTGAAGCTCACCGTCGTGCAGCTGGTCCATGATGTTCCACAGGACGTGCC
CACTTTGGAGGAGGGCCAGGGCAATGGCATTGTCATCGTCCTCGCTAATG
GCCGCCGCCACGCGGGCCTCGAAGCCGCCCAACCACGCCAAGAGGCTGCG
GGTCCGCATGATTTCGGCGCTGCCGGTGTTTTGGAGGTGTGCGTAAAGAA
GAGTGTGGATTAGGTCAGAGGGGTGGGCCAGGGTGAGAGATGATAGTGGT
GCTGTCCATCGTCCAAGTGGCTAGTCCAAGCCACCGAATACAGGAAGACG
AAAAATAAGCTCTCAGGTCAAGGTGGCAACATTTTTACGCAGTGTTTTCA
TACACAAAAGACACAAGCAAGATGTCTCTGGCTGAGCTTTCTCCTGCCCA
AAAGGAGGAGATGGTGATCTCCCTCTCCGCCCTTCTCCTCCAAGACAGCG
GCGTAGACATGTCAGCCGAGAACCTCGAGGCAGTCGTCAAGGCGTCCGGC
AACACCGTCGCCGCCTACTACCCTGCTTTCTTCGCTAGCATGATCGAGAA
GGCTGGGGGTAAGCTTGACAAGTTCATGGGTGCACCCGGTGCTGGTGGAG
GAGGAGCGGCGGCTGCGGCCCCGGCGGCAGCAGCAGCGGCTGCGCCTGAG
GCGGGGAAGAAGGAGAAGAAGGAGGAGAAAGAGGAGGAGGCAGACCTGGG
GGGCGCCAGTATGTTTGGTGGAGACGGCTACTAAATTCTTCGGACACCCG
AGGGGAGCATGGATAAAGGGGAGCCACAGGGTAGGAAAGTGGAGGGGAAA
AGGCCATGACGAGAACGAGGAAGAGGGAGAGGAGGAGGAGGAGCAGCGGG
AGAATCAGACTCGGCATGATGTTTTTTTAAAAGGGGGGGGAACAGGAGGA
TGAATGGGTGAAAGAAAGAAAGAAAGACAGAAAGAAAGGCAATTATCTTC
TGGGT
back to top

protein sequence of NO25G01650.1

>NO25G01650.1-protein ID=NO25G01650.1-protein|Name=NO25G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYY
PAFFASMIEKAGGKLDKFMGAPGAGGGGAAAAAPAAAAAAAPEAGKKEKK
EEKEEEADLGGASMFGGDGY*
back to top

mRNA from alignment at chr25:460251..462378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01650.1 ID=NO25G01650.1|Name=NO25G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at chr25:460251..462378- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGCTCACTTTCCCC
GTCGTCGTCATCGTCATTGTCGCTTCCTTCGCGGTTCTTAGCCGCCATCT
GCTCTTCAATTACGGTCTTGAGCTGCTCCTGGTACTCAGGCTATTTCATA
GAGAAGTGTTTGGTGAGCTCGAGTCCAGCTACAGGCCCTTCCTCTCTGCC
TTGCCTTCCTCCCTACACTCCCCTCCTCATAATTGTACGTACCGACAAGG
CCAGGATTTGATGGATACTTTGTGAGCGTTTTGGTACCTTTGAGCCTACG
GCGGCGCCCAGGAAGGTTTCGAGGACGGCGGGGAGCATGGACAAAGGCAT
GAGAAAGGACGAAGAAGGGGAGGAGGAAGACGACGCAAGCTTAGCGGCGA
TGGCCCGGGGGAGGGTAGGACGAAGGAAGGGCAAAAGGGCTTTCCAGCAT
CGCTTGATATCCTCCTCCTCACCCTCCTCAGTCTTGTCGTCCCGCGTGCC
TTGAAGCTCACCGTCGTGCAGCTGGTCCATGATGTTCCACAGGACGTGCC
CACTTTGGAGGAGGGCCAGGGCAATGGCATTGTCATCGTCCTCGCTAATG
GCCGCCGCCACGCGGGCCTCGAAGCCGCCCAACCACGCCAAGAGGCTGCG
GGTCCGCATGATTTCGGCGCTGCCGGTGTTTTGGAGGTGTGCGTAAAGAA
GAGTGTGGATTAGGTCAGAGGGGTGGGCCAGGGTGAGAGATGATAGTGGT
GCTGTCCATCGTCCAAGTGGCTAGTCCAAGCCACCGAATACAGGAAGACG
AAAAATAAGCTCTCAGGTCAAGGTGGCAACATTTTTACGCAGTGTTTTCA
TGTACGTGTAGTCCCTAGGCACTGATCGCCAATGCCCATGCCCATGCCTG
AATTCATACAAACAGAAATGGCGCGGCCGTAAGGAGGTCGATTCGCTCAT
GATGCCAATCTTAGGACCATCATATGCCCCGTCCTCGTCCACGGAGTCCC
TCCAGTCTCTCTCCCACGCGTCTCCTCAGCCGATCCAACGCCCCTGACCA
CGACACTGGCCAGGAAGCCTAAGCTTATGTGGGGCTTTGTGTCCTTGGTT
ACATTTTCTGGGTATGAAAATCGCCCATGCCGACCAAGCAACCTCTCCGT
GGCTGAGGAGGCGAGGAGAAGAGGAAGAAGAGGGGACACGGCGAATTGTG
GGGCTGCTGTTATCACGCACTCATGCACCCACCCACACCATGCAAACACA
CAGACACAAAAGACACAAGCAAGATGTCTCTGGCTGAGCTTTCTCCTGCC
CAAAAGGAGGAGATGGTGATCTCCCTCTCCGCCCTTCTCCTCCAAGACAG
CGGCGTAGACATGTCAGCCGAGAACCTCGAGGCAGTCGTCAAGGTATGTA
GGTTTAGGACTTAAGGACAGGGAGGAGGGCGAGGAGAAGGAGAAGGAGAA
GAAGGTGATGATTGTGGTGAAGTTGCTGCGACTTGTTCCTCCAGCTGCTG
CTGCTTTCGATGTTATCGTCAGGTTGGAAGAAAGGGAGGAGGAGGCAGGG
GCGTGAGCACAAGGCGGCATGGCACACATGAAGTCTTCTGTGGAGTAATC
TATTATACTCTCCTCATCATCCTCTCACCCACATATTCCTTCCTCCCTCC
TCCCTTTCCCTCAGGCGTCCGGCAACACCGTCGCCGCCTACTACCCTGCT
TTCTTCGCTAGCATGATCGAGAAGGCTGGGGGTAAGCTTGACAAGTTCAT
GGGTGCACCCGGTGCTGGTGGAGGAGGAGCGGCGGCTGCGGCCCCGGCGG
CAGCAGCAGCGGCTGCGCCTGAGGCGGGGAAGAAGGAGAAGAAGGAGGAG
AAAGAGGAGGAGGCAGACCTGGGGGGCGCCAGTATGTTTGGTGGAGACGG
CTACTAAATTCTTCGGACACCCGAGGGGAGCATGGATAAAGGGGAGCCAC
AGGGTAGGAAAGTGGAGGGGAAAAGGCCATGACGAGAACGAGGAAGAGGG
AGAGGAGGAGGAGGAGCAGCGGGAGAATCAGACTCGGCATGATGTTTTTT
TAAAAGGGGGGGGAACAGGAGGATGAATGGGTGAAAGAAAGAAAGAAAGA
CAGAAAGAAAGGCAATTATCTTCTGGGT
back to top

Coding sequence (CDS) from alignment at chr25:460251..462378-

>NO25G01650.1 ID=NO25G01650.1|Name=NO25G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at chr25:460251..462378- (Nannochloropsis oceanica)
ATGTCTCTGGCTGAGCTTTCTCCTGCCCAAAAGGAGGAGATGGTGATCTC
CCTCTCCGCCCTTCTCCTCCAAGACAGCGGCGTAGACATGTCAGCCGAGA
ACCTCGAGGCAGTCGTCAAGGCGTCCGGCAACACCGTCGCCGCCTACTAC
CCTGCTTTCTTCGCTAGCATGATCGAGAAGGCTGGGGGTAAGCTTGACAA
GTTCATGGGTGCACCCGGTGCTGGTGGAGGAGGAGCGGCGGCTGCGGCCC
CGGCGGCAGCAGCAGCGGCTGCGCCTGAGGCGGGGAAGAAGGAGAAGAAG
GAGGAGAAAGAGGAGGAGGCAGACCTGGGGGGCGCCAGTATGTTTGGTGG
AGACGGCTACTAA
back to top
Synonyms
Publications