NO25G01650, NO25G01650 (gene) Nannochloropsis oceanica

Overview
NameNO25G01650
Unique NameNO25G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2128
Alignment locationchr25:460251..462378 -

Link to JBrowse

Properties
Property NameValue
Description60s acidic ribosomal protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:460251..462378 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
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BLAST of NO25G01650 vs. NCBI_GenBank
Match: EWM21668.1 (60s acidic ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 9.700e-27
Identity = 112/121 (92.56%), Postives = 117/121 (96.69%), Query Frame = 0 
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYYPAFFASMIEKAGGKLDKFMGAP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGASMFGGDGY 121
            MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENL+AV+KASGNTVAAYYPA +AS+IEKAGGKLDKFMGAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLG  +MFGGDGY
Sbjct:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAGNMFGGDGY 121
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BLAST of NO25G01650 vs. NCBI_GenBank
Match: CBJ48603.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.3 bits (168), Expect = 9.200e-9
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 0 
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYYPAFFASMIEKAGG 64
            MSL+EL   QK +MV+SL+ALLL+D+G  ++AEN+ AVV A+ N V AYYP  FA+M+EK+ G
Sbjct:   38 MSLSELPAPQKNDMVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG 100
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BLAST of NO25G01650 vs. NCBI_GenBank
Match: XP_012205742.1 (hypothetical protein SPRG_10789 [Saprolegnia parasitica CBS 223.65] >KDO23594.1 hypothetical protein SPRG_10789 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 67.0 bits (162), Expect = 4.500e-8
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0 
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYYPAFFASMIEKAGGKLDKFMGAP 73
            MS+A+LS AQK+E+  S++ LLL D+ VD+SAEN+ A + AS N VAAY P  FA  IEK G K++K +  P
Sbjct:    1 MSIADLSAAQKQELATSVAVLLLTDAKVDVSAENIVAALDASKNKVAAYLPTLFADAIEK-GLKVEKLLAGP 71
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BLAST of NO25G01650 vs. NCBI_GenBank
Match: OQR84398.1 (hypothetical protein ACHHYP_13424 [Achlya hypogyna])

HSP 1 Score: 66.2 bits (160), Expect = 7.800e-8
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0 
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYYPAFFASMIEKAGGKLDKFMGAP 73
            MS+A+LS AQK+E+  S++ LLL D+ V++SAEN+ A + AS N VAAY P  FA  IEK G K++K +  P
Sbjct:    1 MSIADLSAAQKQELATSVAVLLLTDAKVEVSAENINAALDASKNKVAAYLPTLFADAIEK-GLKVEKLLAGP 71
The following BLAST results are available for this feature:
BLAST of NO25G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21668.19.700e-2792.5660s acidic ribosomal protein [Nannochloropsis gadi... [more]
CBJ48603.19.200e-957.14conserved unknown protein [Ectocarpus siliculosus][more]
XP_012205742.14.500e-852.78hypothetical protein SPRG_10789 [Saprolegnia paras... [more]
OQR84398.17.800e-851.39hypothetical protein ACHHYP_13424 [Achlya hypogyna... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004266NSK004266Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01650.2NO25G01650.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G01650.1NO25G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603912gene_8765Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100611g1gene8762Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01650.2NO25G01650.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G01650.1NO25G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01650 ID=NO25G01650|Name=NO25G01650|organism=Nannochloropsis oceanica|type=gene|length=2128bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGCTCACTTTCCCC
GTCGTCGTCATCGTCATTGTCGCTTCCTTCGCGGTTCTTAGCCGCCATCT
GCTCTTCAATTACGGTCTTGAGCTGCTCCTGGTACTCAGGCTATTTCATA
GAGAAGTGTTTGGTGAGCTCGAGTCCAGCTACAGGCCCTTCCTCTCTGCC
TTGCCTTCCTCCCTACACTCCCCTCCTCATAATTGTACGTACCGACAAGG
CCAGGATTTGATGGATACTTTGTGAGCGTTTTGGTACCTTTGAGCCTACG
GCGGCGCCCAGGAAGGTTTCGAGGACGGCGGGGAGCATGGACAAAGGCAT
GAGAAAGGACGAAGAAGGGGAGGAGGAAGACGACGCAAGCTTAGCGGCGA
TGGCCCGGGGGAGGGTAGGACGAAGGAAGGGCAAAAGGGCTTTCCAGCAT
CGCTTGATATCCTCCTCCTCACCCTCCTCAGTCTTGTCGTCCCGCGTGCC
TTGAAGCTCACCGTCGTGCAGCTGGTCCATGATGTTCCACAGGACGTGCC
CACTTTGGAGGAGGGCCAGGGCAATGGCATTGTCATCGTCCTCGCTAATG
GCCGCCGCCACGCGGGCCTCGAAGCCGCCCAACCACGCCAAGAGGCTGCG
GGTCCGCATGATTTCGGCGCTGCCGGTGTTTTGGAGGTGTGCGTAAAGAA
GAGTGTGGATTAGGTCAGAGGGGTGGGCCAGGGTGAGAGATGATAGTGGT
GCTGTCCATCGTCCAAGTGGCTAGTCCAAGCCACCGAATACAGGAAGACG
AAAAATAAGCTCTCAGGTCAAGGTGGCAACATTTTTACGCAGTGTTTTCA
TGTACGTGTAGTCCCTAGGCACTGATCGCCAATGCCCATGCCCATGCCTG
AATTCATACAAACAGAAATGGCGCGGCCGTAAGGAGGTCGATTCGCTCAT
GATGCCAATCTTAGGACCATCATATGCCCCGTCCTCGTCCACGGAGTCCC
TCCAGTCTCTCTCCCACGCGTCTCCTCAGCCGATCCAACGCCCCTGACCA
CGACACTGGCCAGGAAGCCTAAGCTTATGTGGGGCTTTGTGTCCTTGGTT
ACATTTTCTGGGTATGAAAATCGCCCATGCCGACCAAGCAACCTCTCCGT
GGCTGAGGAGGCGAGGAGAAGAGGAAGAAGAGGGGACACGGCGAATTGTG
GGGCTGCTGTTATCACGCACTCATGCACCCACCCACACCATGCAAACACA
CAGACACAAAAGACACAAGCAAGATGTCTCTGGCTGAGCTTTCTCCTGCC
CAAAAGGAGGAGATGGTGATCTCCCTCTCCGCCCTTCTCCTCCAAGACAG
CGGCGTAGACATGTCAGCCGAGAACCTCGAGGCAGTCGTCAAGgtatgta
ggtttaggacttaaggacagggaggagggcgaggagaaggagaaggagaa
gaaggtgatgattgtggtgaagttgctgcgacttgttcctccagctgctg
ctgctttcgatgttatcgtcaggttggaagaaagggaggaggaggcaggg
gcgtgagcacaaggcggcatggcacacatgaagtcttctgtggagtaatc
tattatactctcctcatcatcctctcacccacatattccttcctccctcc
tccctttccctcagGCGTCCGGCAACACCGTCGCCGCCTACTACCCTGCT
TTCTTCGCTAGCATGATCGAGAAGGCTGGGGGTAAGCTTGACAAGTTCAT
GGGTGCACCCGGTGCTGGTGGAGGAGGAGCGGCGGCTGCGGCCCCGGCGG
CAGCAGCAGCGGCTGCGCCTGAGGCGGGGAAGAAGGAGAAGAAGGAGGAG
AAAGAGGAGGAGGCAGACCTGGGGGGCGCCAGTATGTTTGGTGGAGACGG
CTACTAAATTCTTCGGACACCCGAGGGGAGCATGGATAAAGGGGAGCCAC
AGGGTAGGAAAGTGGAGGGGAAAAGGCCATGACGAGAACGAGGAAGAGGG
AGAGGAGGAGGAGGAGCAGCGGGAGAATCAGACTCGGCATGATGTTTTTT
TAAAAGGGGGGGGAACAGGAGGATGAATGGGTGAAAGAAAGAAAGAAAGA
CAGAAAGAAAGGCAATTATCTTCTGGGT
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protein sequence of NO25G01650.2

>NO25G01650.2-protein ID=NO25G01650.2-protein|Name=NO25G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MHPPTPCKHTDTKDTSKMSLAELSPAQKEEMVISLSALLLQDSGVDMSAE
NLEAVVKASGNTVAAYYPAFFASMIEKAGGKLDKFMGAPGAGGGGAAAAA
PAAAAAAAPEAGKKEKKEEKEEEADLGGASMFGGDGY*
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protein sequence of NO25G01650.1

>NO25G01650.1-protein ID=NO25G01650.1-protein|Name=NO25G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYY
PAFFASMIEKAGGKLDKFMGAPGAGGGGAAAAAPAAAAAAAPEAGKKEKK
EEKEEEADLGGASMFGGDGY*
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Synonyms
Publications