NO25G01560.1, NO25G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01560.1
Unique NameNO25G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2043
Alignment locationchr25:442904..444946 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:442904..444946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01560NO25G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01560.1NO25G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01560.1.cds1NO25G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01560.1 ID=NO25G01560.1|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp
CAACAGGTTTGGAACCTAGGACTCAACATGACCCTGGCAACTGTCCTAGA
CATCGGGGGGACCGATTCCCGGGCCACTAGTATCCCTTCGGAACAGATCG
TCTCAGAGCATGGCAATCACCAAGTATGCAATGGACACAGCAGCCATGAC
GACGACGTCAAGACCGCTGCTCTTCCCACTGGATTGGAAACCGATACCAG
CACCAACGGCAGGGACCATGTGCGAAGCAGCAGCCACGTCAACAACGCCA
CGACTGCTGCTCTCCCCACAGAATTGGAGGCTGGTGCCAGCAATAAGCTC
TCCGCGCCTGTCCGGATCAGCATTGCCTTGCCTCCTGTAGATTCCAAGCT
CTCTGTGTCCCATGGAGGAGTCGGGAATGATCTCTCCGGGAGTGATATCA
ACTGCTCCTTTGAGAGCATGTCGGCCTCGGCCGTCTCTTCTGCCTCTTCT
TCCTTTTCCTCCAATTCCTCCTTCTCATCCTATGACTCCTTTGTCTCGGC
CACTGCCGACATCCTAGAGGCCATGGAAATGATCCCGCCACTTCCAAAAA
GCAGCAAAAAGAAGGGAAGGAAAGAAAAGCAAACTCAGAATAAAGTGACG
ATGACGAACGATTGTGTGAAATCTCCTCCTCTTGCTGCTACCAGTTTTGA
GGCAAGTAATGGCAGGAGTCAGGAGCAGCAGCATCGGGCAGAGGAGGAAG
GAAAATCCATCGAGGGAGAAGAGCTGGAAATGAGGAAGAAGGATGGCAAG
GAGGGGAGCAGGAAGGATAAGAGGAGGGAGGCCTCGGAGGAGGACTTCAA
GGAGGAGAGACGTCAAAAAGAAGAACTCATCATCAACGGCAGCAGCAATT
GCACGCGAGGAGCGGAGACAACGATAAAAAAGCGCAGTGGATGCAGTGAG
ATGAGAGAGAAAAGCGTGAATGGTATCTCTTCAGAAACTGCAGCAGCAGT
CTCAGCAGCAGCAGTAGCAGCCGCAGCCGCAGCCGCAGCAGCCACAGCAG
CAGAAGAAGCAGCAGAAGCAGCAGCAGCCACCACCACCATCACTGACATT
AAAAAGACTCACGGAACACCAAGCAGTACCAGCAACAATCAAAGGATGGG
CCTCTTATTGGATCCCCCCTCCTCCTCTCATGCCTCCTCCATGTTCGCCT
CCCCCTCACCCATCTTCCCTTCGTCCATTCTTTCCTCCTCCTCCTCCCCC
AACTCCCCTACGGATGACGCCGACCTACCTTCCTCTAACACCATAACTTT
CCAACAATTAAAACGAGGAGGGGGGTATGAAGGGATAGAGGAGGGCATGT
ACGAAGATGAAGGAGCGGGGGGATGTAAAAGAGTCCTTGGGTTGGTGGAG
GAGGAAGAGGGCGTGTTCGAGGTACCTACATTCAACTCCTTCATGTCGAG
AGAGGCAGCATTCAAGAGAGAGGCCGTTAGGGTGGGATGGAGGGTGTTGG
CGCGGGTGGTGGTGGGGGTGGGGTTGGCTGGCATTGTGGCGTGGGTGTTT
ATGATGTATAGATGAATGTGGAAGAGAGGAAGAGAAGGGGGGGGTAGGGG
TTCACGCGCACCTCAATAGATGATGGTGATGGTGATATGATGATGGTGAT
GATGGAGATGATTCGGTAATGATGGTGATTGACTGTGGTAAGTGGGAAGA
CCGACCGACTCCCCTATGAGCTAGAAAATGCTGATTTAAATGTGCTTTCG
TCTACTTCTTAAATTTTTATTTTTTTTTCTATAAATCGGGGTCGAAATGG
AAGAGCAGTTGCGGGTTGTGTGTTTGCGTGTGTGTAGATGTGAAGGCGTG
TGTAGGGCTGCGTCCATGCCATGTCATTGCGGTACGACCGAATACGAGAG
AGATAGAGGGCAATCGAGAGATTGATTCCTCGCTCATATTCAAAGTAAAG
GAAGAGGGTAGAGATAAATCTGGGGAAAGAACTTCGCAACACCACAGTGA
AAACGGCGAAGGATGACAGAAATTCAAAGAGGGACGGGAAAGAATAAAGA
ACCACAAGGTTAGAAATTTTGAGGGCCATTCAATGCCAATGAG
back to top

protein sequence of NO25G01560.1

>NO25G01560.1-protein ID=NO25G01560.1-protein|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MTLATVLDIGGTDSRATSIPSEQIVSEHGNHQVCNGHSSHDDDVKTAALP
TGLETDTSTNGRDHVRSSSHVNNATTAALPTELEAGASNKLSAPVRISIA
LPPVDSKLSVSHGGVGNDLSGSDINCSFESMSASAVSSASSSFSSNSSFS
SYDSFVSATADILEAMEMIPPLPKSSKKKGRKEKQTQNKVTMTNDCVKSP
PLAATSFEASNGRSQEQQHRAEEEGKSIEGEELEMRKKDGKEGSRKDKRR
EASEEDFKEERRQKEELIINGSSNCTRGAETTIKKRSGCSEMREKSVNGI
SSETAAAVSAAAVAAAAAAAAATAAEEAAEAAAATTTITDIKKTHGTPSS
TSNNQRMGLLLDPPSSSHASSMFASPSPIFPSSILSSSSSPNSPTDDADL
PSSNTITFQQLKRGGGYEGIEEGMYEDEGAGGCKRVLGLVEEEEGVFEVP
TFNSFMSREAAFKREAVRVGWRVLARVVVGVGLAGIVAWVFMMYR*
back to top

mRNA from alignment at chr25:442904..444946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01560.1 ID=NO25G01560.1|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at chr25:442904..444946- (Nannochloropsis oceanica)
CAACAGGTTTGGAACCTAGGACTCAACATGACCCTGGCAACTGTCCTAGA
CATCGGGGGGACCGATTCCCGGGCCACTAGTATCCCTTCGGAACAGATCG
TCTCAGAGCATGGCAATCACCAAGTATGCAATGGACACAGCAGCCATGAC
GACGACGTCAAGACCGCTGCTCTTCCCACTGGATTGGAAACCGATACCAG
CACCAACGGCAGGGACCATGTGCGAAGCAGCAGCCACGTCAACAACGCCA
CGACTGCTGCTCTCCCCACAGAATTGGAGGCTGGTGCCAGCAATAAGCTC
TCCGCGCCTGTCCGGATCAGCATTGCCTTGCCTCCTGTAGATTCCAAGCT
CTCTGTGTCCCATGGAGGAGTCGGGAATGATCTCTCCGGGAGTGATATCA
ACTGCTCCTTTGAGAGCATGTCGGCCTCGGCCGTCTCTTCTGCCTCTTCT
TCCTTTTCCTCCAATTCCTCCTTCTCATCCTATGACTCCTTTGTCTCGGC
CACTGCCGACATCCTAGAGGCCATGGAAATGATCCCGCCACTTCCAAAAA
GCAGCAAAAAGAAGGGAAGGAAAGAAAAGCAAACTCAGAATAAAGTGACG
ATGACGAACGATTGTGTGAAATCTCCTCCTCTTGCTGCTACCAGTTTTGA
GGCAAGTAATGGCAGGAGTCAGGAGCAGCAGCATCGGGCAGAGGAGGAAG
GAAAATCCATCGAGGGAGAAGAGCTGGAAATGAGGAAGAAGGATGGCAAG
GAGGGGAGCAGGAAGGATAAGAGGAGGGAGGCCTCGGAGGAGGACTTCAA
GGAGGAGAGACGTCAAAAAGAAGAACTCATCATCAACGGCAGCAGCAATT
GCACGCGAGGAGCGGAGACAACGATAAAAAAGCGCAGTGGATGCAGTGAG
ATGAGAGAGAAAAGCGTGAATGGTATCTCTTCAGAAACTGCAGCAGCAGT
CTCAGCAGCAGCAGTAGCAGCCGCAGCCGCAGCCGCAGCAGCCACAGCAG
CAGAAGAAGCAGCAGAAGCAGCAGCAGCCACCACCACCATCACTGACATT
AAAAAGACTCACGGAACACCAAGCAGTACCAGCAACAATCAAAGGATGGG
CCTCTTATTGGATCCCCCCTCCTCCTCTCATGCCTCCTCCATGTTCGCCT
CCCCCTCACCCATCTTCCCTTCGTCCATTCTTTCCTCCTCCTCCTCCCCC
AACTCCCCTACGGATGACGCCGACCTACCTTCCTCTAACACCATAACTTT
CCAACAATTAAAACGAGGAGGGGGGTATGAAGGGATAGAGGAGGGCATGT
ACGAAGATGAAGGAGCGGGGGGATGTAAAAGAGTCCTTGGGTTGGTGGAG
GAGGAAGAGGGCGTGTTCGAGGTACCTACATTCAACTCCTTCATGTCGAG
AGAGGCAGCATTCAAGAGAGAGGCCGTTAGGGTGGGATGGAGGGTGTTGG
CGCGGGTGGTGGTGGGGGTGGGGTTGGCTGGCATTGTGGCGTGGGTGTTT
ATGATGTATAGATGAATGTGGAAGAGAGGAAGAGAAGGGGGGGGTAGGGG
TTCACGCGCACCTCAATAGATGATGGTGATGGTGATATGATGATGGTGAT
GATGGAGATGATTCGGTAATGATGGTGATTGACTGTGGTAAGTGGGAAGA
CCGACCGACTCCCCTATGAGCTAGAAAATGCTGATTTAAATGTGCTTTCG
TCTACTTCTTAAATTTTTATTTTTTTTTCTATAAATCGGGGTCGAAATGG
AAGAGCAGTTGCGGGTTGTGTGTTTGCGTGTGTGTAGATGTGAAGGCGTG
TGTAGGGCTGCGTCCATGCCATGTCATTGCGGTACGACCGAATACGAGAG
AGATAGAGGGCAATCGAGAGATTGATTCCTCGCTCATATTCAAAGTAAAG
GAAGAGGGTAGAGATAAATCTGGGGAAAGAACTTCGCAACACCACAGTGA
AAACGGCGAAGGATGACAGAAATTCAAAGAGGGACGGGAAAGAATAAAGA
ACCACAAGGTTAGAAATTTTGAGGGCCATTCAATGCCAATGAG
back to top

Coding sequence (CDS) from alignment at chr25:442904..444946-

>NO25G01560.1 ID=NO25G01560.1|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr25:442904..444946- (Nannochloropsis oceanica)
ATGACCCTGGCAACTGTCCTAGACATCGGGGGGACCGATTCCCGGGCCAC
TAGTATCCCTTCGGAACAGATCGTCTCAGAGCATGGCAATCACCAAGTAT
GCAATGGACACAGCAGCCATGACGACGACGTCAAGACCGCTGCTCTTCCC
ACTGGATTGGAAACCGATACCAGCACCAACGGCAGGGACCATGTGCGAAG
CAGCAGCCACGTCAACAACGCCACGACTGCTGCTCTCCCCACAGAATTGG
AGGCTGGTGCCAGCAATAAGCTCTCCGCGCCTGTCCGGATCAGCATTGCC
TTGCCTCCTGTAGATTCCAAGCTCTCTGTGTCCCATGGAGGAGTCGGGAA
TGATCTCTCCGGGAGTGATATCAACTGCTCCTTTGAGAGCATGTCGGCCT
CGGCCGTCTCTTCTGCCTCTTCTTCCTTTTCCTCCAATTCCTCCTTCTCA
TCCTATGACTCCTTTGTCTCGGCCACTGCCGACATCCTAGAGGCCATGGA
AATGATCCCGCCACTTCCAAAAAGCAGCAAAAAGAAGGGAAGGAAAGAAA
AGCAAACTCAGAATAAAGTGACGATGACGAACGATTGTGTGAAATCTCCT
CCTCTTGCTGCTACCAGTTTTGAGGCAAGTAATGGCAGGAGTCAGGAGCA
GCAGCATCGGGCAGAGGAGGAAGGAAAATCCATCGAGGGAGAAGAGCTGG
AAATGAGGAAGAAGGATGGCAAGGAGGGGAGCAGGAAGGATAAGAGGAGG
GAGGCCTCGGAGGAGGACTTCAAGGAGGAGAGACGTCAAAAAGAAGAACT
CATCATCAACGGCAGCAGCAATTGCACGCGAGGAGCGGAGACAACGATAA
AAAAGCGCAGTGGATGCAGTGAGATGAGAGAGAAAAGCGTGAATGGTATC
TCTTCAGAAACTGCAGCAGCAGTCTCAGCAGCAGCAGTAGCAGCCGCAGC
CGCAGCCGCAGCAGCCACAGCAGCAGAAGAAGCAGCAGAAGCAGCAGCAG
CCACCACCACCATCACTGACATTAAAAAGACTCACGGAACACCAAGCAGT
ACCAGCAACAATCAAAGGATGGGCCTCTTATTGGATCCCCCCTCCTCCTC
TCATGCCTCCTCCATGTTCGCCTCCCCCTCACCCATCTTCCCTTCGTCCA
TTCTTTCCTCCTCCTCCTCCCCCAACTCCCCTACGGATGACGCCGACCTA
CCTTCCTCTAACACCATAACTTTCCAACAATTAAAACGAGGAGGGGGGTA
TGAAGGGATAGAGGAGGGCATGTACGAAGATGAAGGAGCGGGGGGATGTA
AAAGAGTCCTTGGGTTGGTGGAGGAGGAAGAGGGCGTGTTCGAGGTACCT
ACATTCAACTCCTTCATGTCGAGAGAGGCAGCATTCAAGAGAGAGGCCGT
TAGGGTGGGATGGAGGGTGTTGGCGCGGGTGGTGGTGGGGGTGGGGTTGG
CTGGCATTGTGGCGTGGGTGTTTATGATGTATAGATGA
back to top
Synonyms
Publications