NO25G01380.1, NO25G01380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G01380.1
Unique Name	NO25G01380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2103
Alignment location	chr25:388605..390707 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:388605..390707 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO25G01380.1 vs.
Match: XP_006353466.2 (PREDICTED: protein tesmin/TSO1-like CXC 5 [Solanum tuberosum])

HSP 1 Score: 152.1 bits (383), Expect = 5.500e-33
Identity = 80/165 (48.48%), Postives = 92/165 (55.76%), Query Frame = 0

Query:   61 CSCKKSNCLKLYCECFSNGVYCNGGQQGQQGGGQEGGQQQQQQQQQQQQREGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILH----AGTTKEETGCDGGGGGERGGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            C+CK S CLKLYCECF++GVYC+G                             C C  C NN+ NE  RREA+E+ L RNPHAFR KI      A   KEETG             G+V  KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  145 CNCKHSRCLKLYCECFASGVYCDG-----------------------------CNCNNCHNNVENEPARREAVEATLERNPHAFRPKIASSPHGARDNKEETG------------DGLVLAKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 267

The following BLAST results are available for this feature:

BLAST of NO25G01380.1 vs.

BLAST of NO25G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_006353466.2	5.500e-33	48.48	PREDICTED: protein tesmin/TSO1-like CXC 5 [Solanum...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G01380	NO25G01380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G01380.1	NO25G01380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G01380.1.cds1	NO25G01380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:388605..390707-
coding sequence from alignment at chr25:388605..390707-

mRNA sequence

>NO25G01380.1 ID=NO25G01380.1|Name=NO25G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp
CGAGGAGATGCCAACACACTCGGTGGCGCACTACATCTGAATCTTTCGGT
GCACGCCTATATTTCTGTGTATGGTCCAGTCCTTGTTCGATGGACAAGGC
CCCTGGGTGGCATTTGCTAATAATTTGCCTGCGACACTGCTTGTGCTCCT
TGGATTGACCTCTCACCTCCCCTCACCCTTCCTCCACATCTCACCGTACA
GGGTTTATCATCCCTGTCTGCCCTTTCTGCACAAGCGTACATGCGCCCGT
TCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGCTCCACCCTCCTCC
CTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTCACACCATAGGGAA
TGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCCTTCTCCTTCTCCT
CCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAGCAACTGTCTCAAA
TTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCAATGGAGGGCAGCA
GGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAAATGTGAAGGTTGTTTC
AACAACCTGGCGAATGAAAAGACGAGGCGAGAAGCGATTGAATCGGCTCT
AAGTCGGAATCCGCATGCGTTTAGATCCAAAATCTTACACGCCGGAACGA
CGAAGGAGGAGACTGGATGTGACGGAGGAGGAGGGGGAGAACGGGGAGGA
GAAGGAGGAATTGTGGCTATAAAGCACCAAAAAGGTTGCCATTGCAAAAG
ATCGCACTGCCTTAAAAAATACTGTGAATGCTTTCAGGCGGGTATTCTGT
GTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTGGAACTACGGTGGGTCC
GAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGAAGGAGCCTACAGCACC
TGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGAGATGGGGATAGTAGAC
TTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGTTACTTACCAAGGCGAT
TTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAAGCGAGGGAGGGAATGC
ACCAGCAAAGCGTAAATGTATTGATTCTCAAACAGGTTGGAGAAGGAATG
AGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCAATCAAAGAATGTGCTG
GATGTGATGAAGCCCCAGATGGTTGATGATGTGGTTCGATTGTTGGTGCA
GTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAGCAGCAGCTGCTGCAGG
AGGAAGTGCGACGACGACGATGGCGACGAGAAGGCAATGAGCAGCGGAGA
GAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTATCTCGCAATCGTCCTC
AGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCTGCAGAGACAGCAGCTA
GCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAAAGAGAAGAAGAATGAG
TTGATGGAGCTGGATAGGGAGGACGAAGACGACTTATGCTGTAATGAAGA
GGCACTAGATGTCTTCGAAGGGCTGGATGGCTTGATGGAGGGCGAGAAGG
ATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGGCACTGCGGCTGCGCTA
GCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGCAAGAAGATGGTAGTTA
CCTTTCACCAACGAAAGGTGCAACAATAGCATCAACAGCAGCTCAATCAC
AGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGTCCGACGGCATCGGCAA
GAAATCGCTGTACTCCAACATTTGAATGCGGCCTTGCTTAGAATGTACAA
CATGGTTGATCGTGCCAAAGTGATCGGCGGCGGTGGCGGGGGAGGAGGAG
GTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGAGGAGGG
GGGGGAGGAGAGGGAGGAGGAGGGGGGGAGGAGAGGGAGGAGGAGGGGGG
GGAGGAGAAGGAGAAGGAGGAGGCGGGGGAGGAGAAGGAGAATCAGGAGG
AGGAGGAGAAGGAAGAGGAGGTGGAGGAGGAGGAGGAGGATTGGGAGGGG
TAG

protein sequence of NO25G01380.1

>NO25G01380.1-protein ID=NO25G01380.1-protein|Name=NO25G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MRPFFSPSSQPPSSRAPPSSLSSFFHRPLSEPHTIGNAWETSTSVTTTPF
SFSSFPSSSSCSCKKSNCLKLYCECFSNGVYCNGGQQGQQGGGQEGGQQQ
QQQQQQQQQREGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILH
AGTTKEETGCDGGGGGERGGEGGIVAIKHQKGCHCKRSHCLKKYCECFQA
GILCVERKCRCLDCWNYGGSEALIKARAGRRKEPTAPVAAPLAARVGGDG
DSRLVEGKLGEEGEVTYQGDLSAGGGGGRGGSEGGNAPAKRKCIDSQTGW
RRNEGERVKRAVRMQSKNVLDVMKPQMVDDVVRLLVQSAWEVGEKEEEQQ
LLQEEVRRRRWRREGNEQRREGEEEGGEGVSISQSSSAAAAARAAALAAE
TAASKKEATVGKEGKEKKNELMELDREDEDDLCCNEEALDVFEGLDGLME
GEKDGEEARDEGRVGTAAALAAEASLGSSAGQEDGSYLSPTKGATIASTA
AQSQPPFYFPSSSRVRRHRQEIAVLQHLNAALLRMYNMVDRAKVIGGGGG
GGGGGGGGGGGGGGGGEGGGGGGEGGGGGEEREEEGGEEKEKEEAGEEKE
NQEEEEKEEEVEEEEEDWEG*

mRNA from alignment at chr25:388605..390707-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G01380.1 ID=NO25G01380.1|Name=NO25G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr25:388605..390707- (Nannochloropsis oceanica)
CGAGGAGATGCCAACACACTCGGTGGCGCACTACATCTGAATCTTTCGGT
GCACGCCTATATTTCTGTGTATGGTCCAGTCCTTGTTCGATGGACAAGGC
CCCTGGGTGGCATTTGCTAATAATTTGCCTGCGACACTGCTTGTGCTCCT
TGGATTGACCTCTCACCTCCCCTCACCCTTCCTCCACATCTCACCGTACA
GGGTTTATCATCCCTGTCTGCCCTTTCTGCACAAGCGTACATGCGCCCGT
TCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGCTCCACCCTCCTCC
CTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTCACACCATAGGGAA
TGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCCTTCTCCTTCTCCT
CCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAGCAACTGTCTCAAA
TTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCAATGGAGGGCAGCA
GGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAAATGTGAAGGTTGTTTC
AACAACCTGGCGAATGAAAAGACGAGGCGAGAAGCGATTGAATCGGCTCT
AAGTCGGAATCCGCATGCGTTTAGATCCAAAATCTTACACGCCGGAACGA
CGAAGGAGGAGACTGGATGTGACGGAGGAGGAGGGGGAGAACGGGGAGGA
GAAGGAGGAATTGTGGCTATAAAGCACCAAAAAGGTTGCCATTGCAAAAG
ATCGCACTGCCTTAAAAAATACTGTGAATGCTTTCAGGCGGGTATTCTGT
GTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTGGAACTACGGTGGGTCC
GAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGAAGGAGCCTACAGCACC
TGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGAGATGGGGATAGTAGAC
TTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGTTACTTACCAAGGCGAT
TTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAAGCGAGGGAGGGAATGC
ACCAGCAAAGCGTAAATGTATTGATTCTCAAACAGGTTGGAGAAGGAATG
AGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCAATCAAAGAATGTGCTG
GATGTGATGAAGCCCCAGATGGTTGATGATGTGGTTCGATTGTTGGTGCA
GTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAGCAGCAGCTGCTGCAGG
AGGAAGTGCGACGACGACGATGGCGACGAGAAGGCAATGAGCAGCGGAGA
GAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTATCTCGCAATCGTCCTC
AGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCTGCAGAGACAGCAGCTA
GCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAAAGAGAAGAAGAATGAG
TTGATGGAGCTGGATAGGGAGGACGAAGACGACTTATGCTGTAATGAAGA
GGCACTAGATGTCTTCGAAGGGCTGGATGGCTTGATGGAGGGCGAGAAGG
ATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGGCACTGCGGCTGCGCTA
GCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGCAAGAAGATGGTAGTTA
CCTTTCACCAACGAAAGGTGCAACAATAGCATCAACAGCAGCTCAATCAC
AGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGTCCGACGGCATCGGCAA
GAAATCGCTGTACTCCAACATTTGAATGCGGCCTTGCTTAGAATGTACAA
CATGGTTGATCGTGCCAAAGTGATCGGCGGCGGTGGCGGGGGAGGAGGAG
GTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGAGGAGGG
GGGGGAGGAGAGGGAGGAGGAGGGGGGGAGGAGAGGGAGGAGGAGGGGGG
GGAGGAGAAGGAGAAGGAGGAGGCGGGGGAGGAGAAGGAGAATCAGGAGG
AGGAGGAGAAGGAAGAGGAGGTGGAGGAGGAGGAGGAGGATTGGGAGGGG
TAG

Coding sequence (CDS) from alignment at chr25:388605..390707-

>NO25G01380.1 ID=NO25G01380.1|Name=NO25G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr25:388605..390707- (Nannochloropsis oceanica)
ATGCGCCCGTTCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGCTCC
ACCCTCCTCCCTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTCACA
CCATAGGGAATGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCCTTC
TCCTTCTCCTCCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAGCAA
CTGTCTCAAATTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCAATG
GAGGGCAGCAGGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAAATGTGA
AGGTTGTTTCAACAACCTGGCGAATGAAAAGACGAGGCGAGAAGCGATTG
AATCGGCTCTAAGTCGGAATCCGCATGCGTTTAGATCCAAAATCTTACAC
GCCGGAACGACGAAGGAGGAGACTGGATGTGACGGAGGAGGAGGGGGAGA
ACGGGGAGGAGAAGGAGGAATTGTGGCTATAAAGCACCAAAAAGGTTGCC
ATTGCAAAAGATCGCACTGCCTTAAAAAATACTGTGAATGCTTTCAGGCG
GGTATTCTGTGTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTGGAACTA
CGGTGGGTCCGAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGAAGGAGC
CTACAGCACCTGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGAGATGGG
GATAGTAGACTTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGTTACTTA
CCAAGGCGATTTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAAGCGAGG
GAGGGAATGCACCAGCAAAGCGTAAATGTATTGATTCTCAAACAGGTTGG
AGAAGGAATGAGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCAATCAAA
GAATGTGCTGGATGTGATGAAGCCCCAGATGGTTGATGATGTGGTTCGAT
TGTTGGTGCAGTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAGCAGCAG
CTGCTGCAGGAGGAAGTGCGACGACGACGATGGCGACGAGAAGGCAATGA
GCAGCGGAGAGAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTATCTCGC
AATCGTCCTCAGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCTGCAGAG
ACAGCAGCTAGCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAAAGAGAA
GAAGAATGAGTTGATGGAGCTGGATAGGGAGGACGAAGACGACTTATGCT
GTAATGAAGAGGCACTAGATGTCTTCGAAGGGCTGGATGGCTTGATGGAG
GGCGAGAAGGATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGGCACTGC
GGCTGCGCTAGCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGCAAGAAG
ATGGTAGTTACCTTTCACCAACGAAAGGTGCAACAATAGCATCAACAGCA
GCTCAATCACAGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGTCCGACG
GCATCGGCAAGAAATCGCTGTACTCCAACATTTGAATGCGGCCTTGCTTA
GAATGTACAACATGGTTGATCGTGCCAAAGTGATCGGCGGCGGTGGCGGG
GGAGGAGGAGGTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGGAGGAGA
GGGAGGAGGGGGGGGAGGAGAGGGAGGAGGAGGGGGGGAGGAGAGGGAGG
AGGAGGGGGGGGAGGAGAAGGAGAAGGAGGAGGCGGGGGAGGAGAAGGAG
AATCAGGAGGAGGAGGAGAAGGAAGAGGAGGTGGAGGAGGAGGAGGAGGA
TTGGGAGGGGTAG

Synonyms

Publications