NO25G01380, NO25G01380 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G01380
Unique Name	NO25G01380
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2103
Alignment location	chr25:388605..390707 -

Link to JBrowse

Properties


Property Name	Value
Description	Tesmin/TSO1-like CXC domain-containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:388605..390707 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028307	Lin-54_fam
IPR005172	CRC
IPR033467	Tesmin/TSO1-like_CXC

Homology

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: PNX93036.1 (protein tesmin/TSO1-like CXC 5-like [Trifolium pratense])

HSP 1 Score: 143.7 bits (361), Expect = 2.000e-30
Identity = 83/189 (43.92%), Postives = 99/189 (52.38%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILH----AGTTKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSEALIKARAGRRKEPTAPVAAPLAARVGGDG 251
            S CLKLYCECF++G+YC+G                             C C  CFNN+ NE  RREA+E+ L RNP+AFR KI      A  ++EETG             G+V IKH KGCHCK+S CLKKYCECFQA +LC E  CRC+DC N+ GSE       G +   T    A  AA  G  G
Sbjct:  126 SKCLKLYCECFASGIYCDG-----------------------------CNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETG------------EGLVLIKHNKGCHCKKSGCLKKYCECFQANVLCSE-NCRCMDCKNFEGSEERQALFHGDQNNNTYIQQAANAAITGAIG 272

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: XP_003620600.2 (protein tesmin/TSO1-like CXC 5 [Medicago truncatula] >AES76818.2 tesmin/TSO1-like CXC domain protein [Medicago truncatula])

HSP 1 Score: 142.9 bits (359), Expect = 3.300e-30
Identity = 74/160 (46.25%), Postives = 90/160 (56.25%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILH----AGTTKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G+YC+G                             C C  CFNN+ NE  RREA+E+ L RNP+AFR KI      A  ++EE G             G++ IKH KGCHCK+S CLKKYCECFQA +LC E  CRC+DC N+ GSE
Sbjct:  135 SKCLKLYCECFASGIYCDG-----------------------------CNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREEAG------------EGLILIKHHKGCHCKKSGCLKKYCECFQANVLCSE-NCRCMDCKNFEGSE 252

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: XP_011048388.1 (PREDICTED: protein tesmin/TSO1-like CXC 5 [Populus euphratica])

HSP 1 Score: 142.1 bits (357), Expect = 5.700e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  136 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------DGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 253

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: XP_022842921.1 (protein tesmin/TSO1-like CXC 5 [Olea europaea var. sylvestris])

HSP 1 Score: 142.1 bits (357), Expect = 5.700e-30
Identity = 76/160 (47.50%), Postives = 88/160 (55.00%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILH----AGTTKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++GVYC+G                             C C  C NN+ N++ RREA+E+ L RNP AFR KI      A   +EETG             G+V  KH KGCHCK+S CLKKYCECFQA ILC E  C+CLDC NY GSE
Sbjct:  144 SRCLKLYCECFASGVYCDG-----------------------------CNCVNCHNNIENDEARREAVEATLERNPQAFRPKIASSPHGARDLREETG------------EGVVLAKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCLDCKNYEGSE 261

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: PNS93350.1 (hypothetical protein POPTR_018G083000v3 [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 5.700e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  141 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------DGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 258

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: XP_024446433.1 (protein tesmin/TSO1-like CXC 5 [Populus trichocarpa] >XP_024446434.1 protein tesmin/TSO1-like CXC 5 [Populus trichocarpa] >PNS93349.1 hypothetical protein POPTR_018G083000v3 [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 5.700e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  132 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------DGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 249

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: PNT31983.1 (hypothetical protein POPTR_006G160400v3 [Populus trichocarpa] >PNT31984.1 hypothetical protein POPTR_006G160400v3 [Populus trichocarpa])

HSP 1 Score: 141.7 bits (356), Expect = 7.500e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  120 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------EGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 237

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: XP_011012707.1 (PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 [Populus euphratica] >XP_011012708.1 PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 [Populus euphratica])

HSP 1 Score: 141.7 bits (356), Expect = 7.500e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  116 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------EGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 233

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: XP_011012709.1 (PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2 [Populus euphratica])

HSP 1 Score: 141.7 bits (356), Expect = 7.500e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:   32 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------EGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 149

[Close]

BLAST of NO25G01380 vs. NCBI_GenBank
Match: PNT31982.1 (hypothetical protein POPTR_006G160400v3 [Populus trichocarpa])

HSP 1 Score: 141.7 bits (356), Expect = 7.500e-30
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 0

Query:   66 SNCLKLYCECFSNGVYCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILHA--GT--TKEETGCDGGXXXXXXGEGGIVAIKHQKGCHCKRSHCLKKYCECFQAGILCVERKCRCLDCWNYGGSE 222
            S CLKLYCECF++G YC+G                             C C  C+NN+ NE  RREA+E+ L RNP+AFR KI  +  GT  ++EETG             G+V +KH KGCHCK+S CLKKYCECFQA ILC E  C+C+DC N+ GSE
Sbjct:  120 SRCLKLYCECFASGTYCDG-----------------------------CNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG------------EGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSE-NCKCMDCKNFEGSE 237

The following BLAST results are available for this feature:

BLAST of NO25G01380 vs. NCBI_GenBank

BLAST of NO25G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
PNX93036.1	2.000e-30	43.92	protein tesmin/TSO1-like CXC 5-like [Trifolium pra...	[more]
XP_003620600.2	3.300e-30	46.25	protein tesmin/TSO1-like CXC 5 [Medicago truncatul...	[more]
XP_011048388.1	5.700e-30	46.88	PREDICTED: protein tesmin/TSO1-like CXC 5 [Populus...	[more]
XP_022842921.1	5.700e-30	47.50	protein tesmin/TSO1-like CXC 5 [Olea europaea var....	[more]
PNS93350.1	5.700e-30	46.88	hypothetical protein POPTR_018G083000v3 [Populus t...	[more]
XP_024446433.1	5.700e-30	46.88	protein tesmin/TSO1-like CXC 5 [Populus trichocarp...	[more]
PNT31983.1	7.500e-30	46.88	hypothetical protein POPTR_006G160400v3 [Populus t...	[more]
XP_011012707.1	7.500e-30	46.88	PREDICTED: protein tesmin/TSO1-like CXC 5 isoform ...	[more]
XP_011012709.1	7.500e-30	46.88	PREDICTED: protein tesmin/TSO1-like CXC 5 isoform ...	[more]
PNT31982.1	7.500e-30	46.88	hypothetical protein POPTR_006G160400v3 [Populus t...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL045	nonsL045	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR045	ncniR045	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR073	ngnoR073	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK004286	NSK004286	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO25G01380.1	NO25G01380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673659	gene_8738	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO25G01380.1	NO25G01380.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO25G01380 ID=NO25G01380|Name=NO25G01380|organism=Nannochloropsis oceanica|type=gene|length=2103bp
CGAGGAGATGCCAACACACTCGGTGGCGCACTACATCTGAATCTTTCGGT
GCACGCCTATATTTCTGTGTATGGTCCAGTCCTTGTTCGATGGACAAGGC
CCCTGGGTGGCATTTGCTAATAATTTGCCTGCGACACTGCTTGTGCTCCT
TGGATTGACCTCTCACCTCCCCTCACCCTTCCTCCACATCTCACCGTACA
GGGTTTATCATCCCTGTCTGCCCTTTCTGCACAAGCGTACATGCGCCCGT
TCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGCTCCACCCTCCTCC
CTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTCACACCATAGGGAA
TGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCCTTCTCCTTCTCCT
CCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAGCAACTGTCTCAAA
TTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCAATGGAGGGCAGCA
GGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAAATGTGAAGGTTGTTTC
AACAACCTGGCGAATGAAAAGACGAGGCGAGAAGCGATTGAATCGGCTCT
AAGTCGGAATCCGCATGCGTTTAGATCCAAAATCTTACACGCCGGAACGA
CGAAGGAGGAGACTGGATGTGACGGAGGAGGAGGGGGAGAACGGGGAGGA
GAAGGAGGAATTGTGGCTATAAAGCACCAAAAAGGTTGCCATTGCAAAAG
ATCGCACTGCCTTAAAAAATACTGTGAATGCTTTCAGGCGGGTATTCTGT
GTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTGGAACTACGGTGGGTCC
GAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGAAGGAGCCTACAGCACC
TGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGAGATGGGGATAGTAGAC
TTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGTTACTTACCAAGGCGAT
TTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAAGCGAGGGAGGGAATGC
ACCAGCAAAGCGTAAATGTATTGATTCTCAAACAGGTTGGAGAAGGAATG
AGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCAATCAAAGAATGTGCTG
GATGTGATGAAGCCCCAGATGGTTGATGATGTGGTTCGATTGTTGGTGCA
GTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAGCAGCAGCTGCTGCAGG
AGGAAGTGCGACGACGACGATGGCGACGAGAAGGCAATGAGCAGCGGAGA
GAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTATCTCGCAATCGTCCTC
AGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCTGCAGAGACAGCAGCTA
GCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAAAGAGAAGAAGAATGAG
TTGATGGAGCTGGATAGGGAGGACGAAGACGACTTATGCTGTAATGAAGA
GGCACTAGATGTCTTCGAAGGGCTGGATGGCTTGATGGAGGGCGAGAAGG
ATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGGCACTGCGGCTGCGCTA
GCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGCAAGAAGATGGTAGTTA
CCTTTCACCAACGAAAGGTGCAACAATAGCATCAACAGCAGCTCAATCAC
AGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGTCCGACGGCATCGGCAA
GAAATCGCTGTACTCCAACATTTGAATGCGGCCTTGCTTAGAATGTACAA
CATGGTTGATCGTGCCAAAGTGATCGGCGGCGGTGGCGGGGGAGGAGGAG
GTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGAGGAGGG
GGGGGAGGAGAGGGAGGAGGAGGGGGGGAGGAGAGGGAGGAGGAGGGGGG
GGAGGAGAAGGAGAAGGAGGAGGCGGGGGAGGAGAAGGAGAATCAGGAGG
AGGAGGAGAAGGAAGAGGAGGTGGAGGAGGAGGAGGAGGATTGGGAGGGG
TAG

protein sequence of NO25G01380.1

>NO25G01380.1-protein ID=NO25G01380.1-protein|Name=NO25G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MRPFFSPSSQPPSSRAPPSSLSSFFHRPLSEPHTIGNAWETSTSVTTTPF
SFSSFPSSSSCSCKKSNCLKLYCECFSNGVYCNGGQQGQQGGGQEGGQQQ
QQQQQQQQQREGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKILH
AGTTKEETGCDGGGGGERGGEGGIVAIKHQKGCHCKRSHCLKKYCECFQA
GILCVERKCRCLDCWNYGGSEALIKARAGRRKEPTAPVAAPLAARVGGDG
DSRLVEGKLGEEGEVTYQGDLSAGGGGGRGGSEGGNAPAKRKCIDSQTGW
RRNEGERVKRAVRMQSKNVLDVMKPQMVDDVVRLLVQSAWEVGEKEEEQQ
LLQEEVRRRRWRREGNEQRREGEEEGGEGVSISQSSSAAAAARAAALAAE
TAASKKEATVGKEGKEKKNELMELDREDEDDLCCNEEALDVFEGLDGLME
GEKDGEEARDEGRVGTAAALAAEASLGSSAGQEDGSYLSPTKGATIASTA
AQSQPPFYFPSSSRVRRHRQEIAVLQHLNAALLRMYNMVDRAKVIGGGGG
GGGGGGGGGGGGGGGGEGGGGGGEGGGGGEEREEEGGEEKEKEEAGEEKE
NQEEEEKEEEVEEEEEDWEG*

Synonyms

Publications