NO25G01370.1, NO25G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01370.1
Unique NameNO25G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr25:387511..388113 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:387511..388113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G01370.1 vs.
Match: EWM21600.1 (trafficking protein particle complex subunit 2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 3.500e-61
Identity = 134/193 (69.43%), Postives = 150/193 (77.72%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYNQSTSNSSSSSGGGGIGSGLAALSSSRLLASTSSTGTS 194
            MIACI VVGK+NELLYL+ FL   D +  Y+  L FHF+AHSALDAFDERS   S RP   S SF    + NDMFLG+LCPIEEFRVYGY+TST +K +AILTEN PVRENDLK+V QGLH LYVSYLQSPFSPL+GKITS RF+KGVERQV VYNQS S++S+  GGG    GLA LSSSRLL STSS   S
Sbjct:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYF--LSFHFIAHSALDAFDERSKSVSRRP---SPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGG----GLATLSSSRLLPSTSSISAS 184
The following BLAST results are available for this feature:
BLAST of NO25G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21600.13.500e-6169.43trafficking protein particle complex subunit 2-lik... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01370NO25G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01370.1NO25G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01370.1.cds1NO25G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01370.1 ID=NO25G01370.1|Name=NO25G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTCCTCTACCT
GCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTACGACCCCC
TCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCGATGAACGC
AGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCGTTCACCGG
CGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCCAATAGAAG
AATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGCTCATTGCC
ATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAAAACGTCCT
TCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCCCTTCTCGC
CTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGGTGGAAAGG
CAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGCAGTAGTGG
TGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTCAAGGCTTT
TGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTTTTCCAACT
TGA
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protein sequence of NO25G01370.1

>NO25G01370.1-protein ID=NO25G01370.1-protein|Name=NO25G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDER
SAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIA
ILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVER
QVSVYNQSTSNSSSSSGGGGIGSGLAALSSSRLLASTSSTGTSSFPRFPT
*
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mRNA from alignment at chr25:387511..388113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01370.1 ID=NO25G01370.1|Name=NO25G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp|location=Sequence derived from alignment at chr25:387511..388113- (Nannochloropsis oceanica)
ATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTCCTCTACCT
GCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTACGACCCCC
TCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCGATGAACGC
AGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCGTTCACCGG
CGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCCAATAGAAG
AATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGCTCATTGCC
ATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAAAACGTCCT
TCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCCCTTCTCGC
CTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGGTGGAAAGG
CAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGCAGTAGTGG
TGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTCAAGGCTTT
TGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTTTTCCAACT
TGA
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Coding sequence (CDS) from alignment at chr25:387511..388113-

>NO25G01370.1 ID=NO25G01370.1|Name=NO25G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr25:387511..388113- (Nannochloropsis oceanica)
ATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTCCTCTACCT
GCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTACGACCCCC
TCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCGATGAACGC
AGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCGTTCACCGG
CGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCCAATAGAAG
AATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGCTCATTGCC
ATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAAAACGTCCT
TCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCCCTTCTCGC
CTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGGTGGAAAGG
CAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGCAGTAGTGG
TGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTCAAGGCTTT
TGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTTTTCCAACT
TGA
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Synonyms
Publications