NO25G01370, NO25G01370 (gene) Nannochloropsis oceanica

Overview
NameNO25G01370
Unique NameNO25G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr25:387511..388113 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrafficking protein particle complex subunit 2-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:387511..388113 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR006722Sedlin
Homology
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: EWM21600.1 (trafficking protein particle complex subunit 2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 1.100e-54
Identity = 113/157 (71.97%), Postives = 126/157 (80.25%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYNQ 158
            MIACI VVGK+NELLYL+ FL   D +  Y+  L FHF+AHSALDAFDERS   S RP   S SF    + NDMFLG+LCPIEEFRVYGY+TST +K +AILTEN PVRENDLK+V QGLH LYVSYLQSPFSPL+GKITS RF+KGVERQV VYNQ
Sbjct:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYF--LSFHFIAHSALDAFDERSKSVSRRP---SPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQ 152
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: XP_005855489.1 (trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >XP_005856215.1 trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20141.1 trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20869.1 trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.5 bits (389), Expect = 3.600e-34
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQ 119
            MIACI VVGK+NELLYL+ FL   D +  Y+  L FHF+AHSALDAFDERS   S RP   S SF    + NDMFLG+LCPIEEFRVYGY+TST +K +AILTEN PVRENDLK+V Q
Sbjct:    6 MIACIAVVGKKNELLYLKPFLAQPDASSDYF--LSFHFIAHSALDAFDERSKSVSRRP---SPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ 118
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: CBN79763.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 143.3 bits (360), Expect = 8.300e-31
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDP--LRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MI CI ++G++NE L+L+T+   TD  G   +   LR H + HS+LD   ER  G+         +   A+ + DMFLGHLCPI+E+RVYGY TST LKL+A+L +   +RE +LK V   +H  YV+YL++PFSPL+  + SA+F   V+RQ++ YN
Sbjct:    1 MIVCIAIIGRQNEPLFLRTY---TDAEGEEEEDANLRLHNIVHSSLDVVGERKVGR-------KGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYN 148
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: XP_009538778.1 (hypothetical protein PHYSODRAFT_532679 [Phytophthora sojae] >EGZ05917.1 hypothetical protein PHYSODRAFT_532679 [Phytophthora sojae])

HSP 1 Score: 110.2 bits (274), Expect = 7.800e-21
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDE--RSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MIAC+ V+G  N  LY++TF       G   + L FH++AH +LD  +E  R AG SS             + +DM+LG L PIE++RVYGY T+T +K + +L ++ PVRE++L+     +H LYV+ + +PF+PL  ++TS  F K V   V  +N
Sbjct:    1 MIACVAVIGAANSPLYIRTF-------GEEGEDLGFHYIAHVSLDVIEEKLRGAGISS-------------SKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: XP_008895294.1 (hypothetical protein PPTG_04758 [Phytophthora parasitica INRA-310] >ETI38586.1 hypothetical protein F443_15736 [Phytophthora parasitica P1569] >ETK78789.1 hypothetical protein L915_15278 [Phytophthora parasitica] >ETL32219.1 hypothetical protein L916_15170 [Phytophthora parasitica] >ETL85476.1 hypothetical protein L917_14999 [Phytophthora parasitica] >ETM38620.1 hypothetical protein L914_15133 [Phytophthora parasitica] >ETN19443.1 hypothetical protein PPTG_04758 [Phytophthora parasitica INRA-310] >ETO67357.1 hypothetical protein F444_15714 [Phytophthora parasitica P1976] >ETP08493.1 hypothetical protein F441_15556 [Phytophthora parasitica CJ01A1] >ETP36533.1 hypothetical protein F442_15571 [Phytophthora parasitica P10297] >KUF97968.1 3-hydroxyacyl-CoA dehydrogenase type-2 [Phytophthora nicotianae])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MIAC+ V+G  N  LY++TF       G   + L FH++AH +LD  +E+  G         A  T  ++ +DM+LG L PIE++RVYGY T+T +K + +L ++ PVRE++L+     +H LYV+ + +PF+PL  ++TS  F K V   V  +N
Sbjct:    1 MIACVAVIGAANSPLYIRTF-------GEEGEDLGFHYIAHVSLDVIEEKLRG---------AGIT--SSKDDMYLGSLGPIEDYRVYGYVTNTSVKFVVVL-QDTPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: XP_002905450.1 (trafficking protein particle complex subunit 2-like protein [Phytophthora infestans T30-4] >EEY68291.1 trafficking protein particle complex subunit 2-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MIAC+ V+G  N  LY++TF       G   + L FH++AH +LD  +E+  G         A  T  ++ +DM+LG L PIE++RVYGY T+T +K + +L ++ PVRE++L+     +H LYV+ + +PF+PL  ++TS  F K V   V  +N
Sbjct:    1 MIACVAVIGAANSPLYIRTF-------GEEGEDLGFHYIAHVSLDVIEEKLRG---------AGIT--SSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: KUF80269.1 (Trafficking protein particle complex subunit 2 protein [Phytophthora nicotianae])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MIAC+ V+G  N  LY++TF       G   + L FH++AH +LD  +E+  G         A  T  ++ +DM+LG L PIE++RVYGY T+T +K + +L ++ PVRE++L+     +H LYV+ + +PF+PL  ++TS  F K V   V  +N
Sbjct:  975 MIACVAVIGAANSPLYIRTF-------GEEGEDLGFHYIAHVSLDVIEEKLRG---------AGIT--SSKDDMYLGSLGPIEDYRVYGYVTNTSVKFVVVL-QDTPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 1111
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: POM62813.1 (Trafficking protein particle complex subunit 2-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MIAC+ V+G  N  LY++TF       G   + L FH++AH +LD  +E+  G         A  T  ++ +DM+LG L PIE++RVYGY T+T +K + +L ++ PVRE++L+     +H LYV+ + +PF+PL  ++TS  F K V   V  +N
Sbjct:    1 MIACVAVIGAANSPLYIRTF-------GEEGEDLGFHYIAHVSLDVIEEKLRG---------AGIT--SSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: OWZ13626.1 (Trafficking protein particle complex subunit [Phytophthora megakarya])

HSP 1 Score: 109.0 bits (271), Expect = 1.700e-20
Identity = 59/156 (37.82%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVERQVSVYN 157
            MIAC+ V+G  N  LY++TF       G   + L FH++AH +LD  +E+  G         A  T  ++ +DM++G L PIE++RVYGY T+T +K + +L ++ PVRE++L+     +H LYV+ + +PF+PL  ++TS  F K V   V  +N
Sbjct:    1 MIACVAVIGAANSPLYIRTF-------GEEGEDLGFHYIAHVSLDVIEEKLRG---------AGIT--SSKDDMYMGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
[Close]
BLAST of NO25G01370 vs. NCBI_GenBank
Match: CCI39836.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 107.8 bits (268), Expect = 3.900e-20
Identity = 57/146 (39.04%), Postives = 87/146 (59.59%), Query Frame = 0 
Query:    1 MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDERSAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIAILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAK 147
            +IAC+ VVG  N  LYL+TF    D        L FH + H +LD  +E+             S+T     N+M+LG L PIE++RVYGY T+T++KLIA+L + +P R+++++  L+ +H LYV  + +PF+P+   I+SA F K
Sbjct:    2 LIACVAVVGAANNPLYLRTFDEDED--------LTFHHIVHVSLDLVEEK-----------LRSWTSVAAKNEMYLGFLSPIEDYRVYGYITNTNIKLIAVL-QRQPARDSEIRTFLEQVHKLYVDVISNPFTPIGECISSAEFEK 127
The following BLAST results are available for this feature:
BLAST of NO25G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21600.11.100e-5471.97trafficking protein particle complex subunit 2-lik... [more]
XP_005855489.13.600e-3466.95trafficking protein particle complex subunit 2-lik... [more]
CBN79763.18.300e-3144.94conserved unknown protein [Ectocarpus siliculosus][more]
XP_009538778.17.800e-2139.24hypothetical protein PHYSODRAFT_532679 [Phytophtho... [more]
XP_008895294.11.000e-2038.46hypothetical protein PPTG_04758 [Phytophthora para... [more]
XP_002905450.11.000e-2038.46trafficking protein particle complex subunit 2-lik... [more]
KUF80269.11.000e-2038.46Trafficking protein particle complex subunit 2 pro... [more]
POM62813.11.000e-2038.46Trafficking protein particle complex subunit 2-lik... [more]
OWZ13626.11.700e-2037.82Trafficking protein particle complex subunit [Phyt... [more]
CCI39836.13.900e-2039.04unnamed protein product [Albugo candida][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004289NSK004289Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01370.1NO25G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603381gene_8623Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g2gene8778Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01370.1NO25G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01370 ID=NO25G01370|Name=NO25G01370|organism=Nannochloropsis oceanica|type=gene|length=603bp
ATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTCCTCTACCT
GCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTACGACCCCC
TCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCGATGAACGC
AGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCGTTCACCGG
CGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCCAATAGAAG
AATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGCTCATTGCC
ATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAAAACGTCCT
TCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCCCTTCTCGC
CTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGGTGGAAAGG
CAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGCAGTAGTGG
TGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTCAAGGCTTT
TGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTTTTCCAACT
TGA
back to top

protein sequence of NO25G01370.1

>NO25G01370.1-protein ID=NO25G01370.1-protein|Name=NO25G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDER
SAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIA
ILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVER
QVSVYNQSTSNSSSSSGGGGIGSGLAALSSSRLLASTSSTGTSSFPRFPT
*
back to top
Synonyms
Publications