NO25G01340, NO25G01340 (gene) Nannochloropsis oceanica

Overview
NameNO25G01340
Unique NameNO25G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2457
Alignment locationchr25:380005..382461 -

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Properties
Property NameValue
DescriptionZinc finger protein DZIP1L
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:380005..382461 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR032714DZIP1_N
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: CBN79470.1 (C2H2 zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 86.3 bits (212), Expect = 4.900e-13
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0 
Query:   46 TFSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCLAYQLDRMA 133
            +F F+ R G LD+R + R+D+  +   VD+D LQ H+EN+ FA ++E+DL  +SDQ  +  FRL+QL +EYLL+VQD LA  L+  A
Sbjct:   43 SFYFQQRTGKLDMRAIGRVDIASVVKDVDVDTLQAHLENITFASVSEDDLRLYSDQCFLNLFRLSQLLLEYLLSVQDTLATSLEDRA 129
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: XP_009517441.1 (hypothetical protein PHYSODRAFT_466577 [Phytophthora sojae] >EGZ30166.1 hypothetical protein PHYSODRAFT_466577 [Phytophthora sojae])

HSP 1 Score: 86.3 bits (212), Expect = 4.900e-13
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAFA +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  141 FAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFADVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 218
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: OWZ07531.1 (hypothetical protein PHMEG_00020064, partial [Phytophthora megakarya])

HSP 1 Score: 86.3 bits (212), Expect = 4.900e-13
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAFA +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  123 FAFRQRSGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFADVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 200
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: POM62171.1 (hypothetical protein PHPALM_28707, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 86.3 bits (212), Expect = 4.900e-13
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAFA +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  122 FAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFADVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 199
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: XP_024574051.1 (Zinc finger, C2H2 [Plasmopara halstedii] >CEG37682.1 Zinc finger, C2H2 [Plasmopara halstedii])

HSP 1 Score: 85.5 bits (210), Expect = 8.400e-13
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD+R + RLD++ I A  DI+ +QRH+ENLAFA +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  120 FAFRQRAGKLDIRAIARLDLEKITATTDIEIIQRHLENLAFADVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 197
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: OQR83012.1 (hypothetical protein ACHHYP_15254 [Achlya hypogyna])

HSP 1 Score: 85.5 bits (210), Expect = 8.400e-13
Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:   44 PGTFSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCLAYQLDRMAAQHVHVGKKVEKLK 147
            P  FSFR R+G LD R + ++D++ +    DID +Q H+ENLAF+ +T +D+  +SD+  +K F++AQLT+EYLLNVQ+ L    + +  Q   V  + + L+
Sbjct:   76 PRPFSFRQRQGKLDTRTIAQIDLNKVVRETDIDTIQNHLENLAFSDVTLQDVNQYSDEYFLKLFQVAQLTVEYLLNVQESLVLHTEDLETQCDRVASECKTLE 178
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: ETI33198.1 (hypothetical protein F443_20062 [Phytophthora parasitica P1569])

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-12
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAF+ +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  242 FAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFSDVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 319
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: ETK73555.1 (hypothetical protein L915_19521 [Phytophthora parasitica])

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-12
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAF+ +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  242 FAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFSDVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 319
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: ETL26988.1 (hypothetical protein L916_19410 [Phytophthora parasitica])

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-12
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAF+ +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  254 FAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFSDVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 331
[Close]
BLAST of NO25G01340 vs. NCBI_GenBank
Match: ETL80229.1 (hypothetical protein L917_19254 [Phytophthora parasitica])

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-12
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   47 FSFRPRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSDQAVIKGFRLAQLTIEYLLNVQDCL 125
            F+FR R G LD R + RLD++ IAA  DI+ +QRH+ENLAF+ +T +D+  +SD   +K F++AQLT+EYL++VQD L
Sbjct:  242 FAFRQRAGKLDTRAIARLDLEKIAATTDIETIQRHLENLAFSDVTLDDVQHYSDAYFLKLFQIAQLTLEYLMHVQDSL 319
The following BLAST results are available for this feature:
BLAST of NO25G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN79470.14.900e-1347.13C2H2 zinc finger protein [Ectocarpus siliculosus][more]
XP_009517441.14.900e-1353.85hypothetical protein PHYSODRAFT_466577 [Phytophtho... [more]
OWZ07531.14.900e-1353.85hypothetical protein PHMEG_00020064, partial [Phyt... [more]
POM62171.14.900e-1353.85hypothetical protein PHPALM_28707, partial [Phytop... [more]
XP_024574051.18.400e-1352.56Zinc finger, C2H2 [Plasmopara halstedii] >CEG37682... [more]
OQR83012.18.400e-1340.78hypothetical protein ACHHYP_15254 [Achlya hypogyna... [more]
ETI33198.11.100e-1252.56hypothetical protein F443_20062 [Phytophthora para... [more]
ETK73555.11.100e-1252.56hypothetical protein L915_19521 [Phytophthora para... [more]
ETL26988.11.100e-1252.56hypothetical protein L916_19410 [Phytophthora para... [more]
ETL80229.11.100e-1252.56hypothetical protein L917_19254 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004292NSK004292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01340.1NO25G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01340.1NO25G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01340 ID=NO25G01340|Name=NO25G01340|organism=Nannochloropsis oceanica|type=gene|length=2457bp
ATGGAGAGTCCTGGAGTCCCCACCCTTCTGCATCCCCTGTTGGGTGGCGG
CGGAGGTAGCCAGGGCGCGCGACATTCCCAACAGCAACACCACCCACACT
CAAGCGCCTTTCCAGGCCACCACCACGGCCCAGGCACATTTTCTTTTCGG
CCCCGTCGGGGCACACTCGATTTAAGAATCTTAAATCGTCTTGACGTTGA
CCACATCGCAGCGTGCGTGGACATCGATGCCTTGCAACGGCACGTGGAAA
ATCTGGCCTTTGCATGCTTGACAGAGGAAGATCTCGCTGCCCACTCTGAT
CAGGCCGTGATCAAGGGATTTCGTCTCGCCCAGCTTACCATCGAATATCT
GCTTAATGTCCAAGATTGTCTTGCATATCAGCTTGATCGAATGGCTGCAC
AGCATGTACATGTCGGCAAGAAAGTAGAGAAGCTCAAGCTCCGCCTTAGG
CAAGCCTGTTTGGCTACCACCGCCGCCGCAGCTGCAGCTGTAGCAGCACC
AACAGCGGTTAAAATGCCGTTTTCTCCTTCACGGAAGCATGCAAGCAACC
ACCACGATCGACGCCACCACCACCGGCGGCACCACCACAATCACGCGGCC
GCACCCTCCCTCCCTCCCTCCCTCCCTGCCGAGGCCGATCACAGCTTTGT
CCCCACGCCAACGGTCCTCCGTCTTTATGTCACCTTTGCAAATGGTTCTT
GTGTTGTGGCAACTGCTCCATCTACTTTACTGCTACACGAGCTTAAGGCA
CAGGTGCTCCCGGACATGCCTGCAATCGCAACGTCGACTGAGAACAGGAG
GAGGAGAAGGAGGAAGGAAGAAAAGGTGAGGAGGCTAAGTGAAAGAGATT
TTCGCCTGGTATATCGTGGGTTGAGATTATCGGATGATAAATCCTTGAGG
GAGTTGGAGGTTCCTGACAATGCTTCCTTGTTTTGTTTAATCGTCGGAGA
CGAGGGGCCGCGGGAAGAAGAGGAGGATAAGGAAGAGGAGGAAGAGGAAG
AAGCGAGAAAGGCAGCAACGGTAGAGGCAGAGAAGGTACGATTGCTTACG
CAGAATGATGCGCAGCAGTCAAGGCTTCGCCGGGAGCAAGCGGAAGCAAT
GGCAATTATTCAGGAACGGCTTGCCCAGTTTGAGACGCACGTATTAGGTT
TTCTAGAGCAGCAGCAACAACGGCAGGAGCAGCACCAGCAGCAGCAACAA
CGCAATCCTGCCCCTTCCCCCCCTCCTCCTCCTCCACCCTCTCTCACCAA
TCATTGCATCAGCAGCTTCCCTCAACCCCAAAAAGTAGCAGAGGACAGCT
TGAGCATCGATGAGCGAGTTCGTCTCCTCCTCGCGCAAATGGAGCGTCGC
ATCCGACGTAAAGTCAAGCGGCTTTCGATCACCTCCACAGACATGACTCA
TGTCCGTAAATTGAAGGGGCTACTCTCCTCGGAAATTGGCCGGTTGGGGG
TTACGGGTTTATCCTTGCCCCACCAGCAGCAGCAACATCACTACCACCAG
CAGCAGCGGCACCAGCACCAACAGCAGCAGGTAGTGTCAGTAGCAGATAA
AAAGGCAGGAGGGAAAAAGGAGGAGAAGAATTTGGAGGCCCGCCTCGCCC
ACCTCCATGCCCGTCGATCTTGCCTTTCCGACAATGTCAAGAGTGTTCTG
GACAAGATTCAGGGCGTGGCTCAAATGTCCTTGACACAGGTGCCCCGGCC
ATTCGCTCTCCAAACCATGACAACCTGTACAGCTGCAGCAGCTGTTCCTC
CGTGTCCTTCTATTTTTGAGCAAGAGTCCTCCAAATCATCGCCGCCCCCC
TTCCCCCCTCCTCTTCCTCCACCTCATCATTCGCTCTCTCTCTTAGCACC
AGTCAAGCCCCCCAAGCGACGCACCTTTGGCATGGCAGATATGGTAGCCG
TGAGCAAGGCTGTGCAGGATGGGAAAGAAAAAGATAATGAAGAAGAAGAT
GAAGAAGAGGACGAAGAAGATGACGAAGAAGATGACGATGATGATGATAA
TGATGAAGGAGAAGACGCTGATGATGATTATGAACGACAACAAGAACAAC
AACAAGAACAACGACAAGAACAACAAGAAGGGGTGGGACTGAGTGACCCA
GGGAAGCACCATCGGCGCCTTCTTTCCGCACGCGCGTGTCTGAGTAAACA
TGATGGCGGGGAAGAAGATCGCCATCATGAGTTATCTTTTGCGCATTTTA
CTCATGATGATCAGGCCTCACTGCCGCCCGTGGCGACGACATTGTCTTCT
TCTTCCCGCTCGTCCCGCTCCTTCTCCTCCTCCTCCCCCTCCTCGGTCGT
CTCCTCTATTTCAGATGAGATCGTTAATGGTGTGACGTCGATGCATGGGG
AGTCCAACAGAGCTGCACAGCGGGAGAACGATCACTCTCAAGAGGAGGAT
GAAGACGAAGAGGAGATTATGACAATACCTGAAGAGATAGAGGAGGAGAA
AGGGTAG
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protein sequence of NO25G01340.1

>NO25G01340.1-protein ID=NO25G01340.1-protein|Name=NO25G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=819bp
MESPGVPTLLHPLLGGGGGSQGARHSQQQHHPHSSAFPGHHHGPGTFSFR
PRRGTLDLRILNRLDVDHIAACVDIDALQRHVENLAFACLTEEDLAAHSD
QAVIKGFRLAQLTIEYLLNVQDCLAYQLDRMAAQHVHVGKKVEKLKLRLR
QACLATTAAAAAAVAAPTAVKMPFSPSRKHASNHHDRRHHHRRHHHNHAA
APSLPPSLPAEADHSFVPTPTVLRLYVTFANGSCVVATAPSTLLLHELKA
QVLPDMPAIATSTENRRRRRRKEEKVRRLSERDFRLVYRGLRLSDDKSLR
ELEVPDNASLFCLIVGDEGPREEEEDKEEEEEEEARKAATVEAEKVRLLT
QNDAQQSRLRREQAEAMAIIQERLAQFETHVLGFLEQQQQRQEQHQQQQQ
RNPAPSPPPPPPPSLTNHCISSFPQPQKVAEDSLSIDERVRLLLAQMERR
IRRKVKRLSITSTDMTHVRKLKGLLSSEIGRLGVTGLSLPHQQQQHHYHQ
QQRHQHQQQQVVSVADKKAGGKKEEKNLEARLAHLHARRSCLSDNVKSVL
DKIQGVAQMSLTQVPRPFALQTMTTCTAAAAVPPCPSIFEQESSKSSPPP
FPPPLPPPHHSLSLLAPVKPPKRRTFGMADMVAVSKAVQDGKEKDNEEED
EEEDEEDDEEDDDDDDNDEGEDADDDYERQQEQQQEQRQEQQEGVGLSDP
GKHHRRLLSARACLSKHDGGEEDRHHELSFAHFTHDDQASLPPVATTLSS
SSRSSRSFSSSSPSSVVSSISDEIVNGVTSMHGESNRAAQRENDHSQEED
EDEEEIMTIPEEIEEEKG*
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Synonyms
Publications