NO25G01170.1, NO25G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01170.1
Unique NameNO25G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1785
Alignment locationchr25:320435..322356 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:320435..322356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01170.1 vs.
Match: EWM21569.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 205.7 bits (522), Expect = 4.000e-49
Identity = 115/207 (55.56%), Postives = 139/207 (67.15%), Query Frame = 0 
Query:  386 LQHQPRDFEALIAAGKAYVRQASRILSSPAESADAAGTAGAGEETSLLKEALWCFRTAAVVRPCDPTPHLHAAQVLLTMGGTNEYE---QAKALIHTAEEEFFTASSPTCPFPSHVPHGRVLALLAEARLRFARFFIQAGDEVEGRRALAEVLALRPTYLEAHQLLVTMLREVGNGEEAREAMRRALVALGPRGQDERVVKAFEGLL 590
            L   P D E+LIAAG+AY RQ+ R  ++                 SL +E+  C  TA  +RPCDPT HL AAQVLL     +  E   QAKA+IH AEE FFT SSP+CPFP  +P  RV ALLA ARLRFA+FF+  GDE E +RA+AEVLALRPTYLEAHQLLV +L++ G   EAREAM  AL+ALGPRG++  V++AFE LL
Sbjct:  202 LARHPEDVESLIAAGEAYARQSLRATTTV-------------NRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPD-LPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLL 394
The following BLAST results are available for this feature:
BLAST of NO25G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21569.14.000e-4955.56Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01170NO25G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01170.1NO25G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01170.1.cds1NO25G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01170.1.cds2NO25G01170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01170.1 ID=NO25G01170.1|Name=NO25G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
ATGGCCCGGCAGACACGCCCCATCCACCATCGCCAGTCCCTGTGGGCATC
TTTGTCCTCCCTTCTCCTCTCATTGGGTTTTGCCGCCTTGGCCGTTGTCT
TTCACACCTTGATCATCATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTG
AGAGGAGGGTGGGCCTCGGTATCGGTCGAGGAAGACTCGCCTTTCAACCG
TGCAGGATGTGATTTGATACGGATTGACGCCGCCAGCCTCGACAAGGCAG
CGTTCGAACGTTTGTATCGTGGACAGCGTCCACTGGTTTTGACTTCAACG
TCATCCCCCCTTGTGTTTGCGAGCAGGCGTCAATGGCCTTTTGTCAATGG
CAAGGCGAAAGAGGGGGTGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCC
GACATGGACAGAATTTGACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAA
CAGGAGGAAGTGGGAGAGGAAGGAATGATGGGATTGGGTTTGGTGAAGAG
GAGGAGGAGAAGAAGAGAGAGCACATTGTCGGGTACCTGCGAGAGCAGTA
GGAGCAGCAGTGGTGGTGGAATCCGCTTGCCACTTGCAGAGTACATCACC
AGATACTTCGACGCAAAAGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAA
CGAGGAAGAGGAGAAGGAAATGGAGGTGGCACGCACGGCCTTGGCTTCGT
GGCGTGTGAGCGACTTACCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCT
CCTCAGTTCCGCGGATGGTGGGTCAGAAACGACGAGAAACAACAGCAACT
ACAGCAGCACGAGCATCAGCAAGGGGAAACCTCCCACAAAGACGCGCACG
ACCACGTGCGGATCATCCTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACG
GCTTCAGACCGCGAGGAATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCT
CTGGTCCTTCTACCCTCCAGGGCAAGGGCTGCAAAACATGACTATGCCCG
GAAAAGGCCATTGTTTGCTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTG
GATGCCCTTGTCGATCATGAAGGAGTGTCGGATCCGGAGGAAGGGAGGAT
GGACCCCCCTCCTTTGGAGTGCTGGCAGCGGCCAGGGGATGTGGTTCTGG
CGACGCTGCAGCACCAGCCACGGGATTTCGAAGCTCTGATAGCGGCAGGC
AAAGCGTACGTGCGCCAAGCCTCGAGGATTTTATCATCACCTGCAGAATC
AGCAGACGCAGCAGGCACAGCAGGAGCAGGAGAGGAAACATCGCTGTTAA
AAGAAGCTCTGTGGTGCTTCCGCACTGCTGCTGTAGTCCGCCCCTGTGAC
CCTACCCCCCATCTCCATGCCGCCCAAGTCCTTCTCACCATGGGGGGTAC
GAATGAGTATGAGCAGGCCAAGGCGTTGATTCATACGGCGGAAGAAGAGT
TTTTTACCGCGTCTTCCCCCACATGTCCTTTCCCTTCCCACGTGCCGCAC
GGACGCGTGCTGGCTCTCCTGGCAGAGGCCCGTTTAAGGTTTGCGCGTTT
TTTCATTCAGGCAGGGGATGAGGTGGAGGGACGACGGGCCCTTGCTGAGG
TTTTAGCATTGCGACCTACCTACCTAGAGGCACATCAACTGTTGGTGACG
ATGTTGAGGGAGGTAGGGAATGGGGAGGAGGCGCGAGAGGCAATGAGACG
CGCTCTTGTTGCCCTGGGCCCGCGCGGACAGGATGAAAGAGTTGTAAAAG
CCTTTGAGGGATTGCTTACATCGCGACAGATGTAA
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protein sequence of NO25G01170.1

>NO25G01170.1-protein ID=NO25G01170.1-protein|Name=NO25G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MARQTRPIHHRQSLWASLSSLLLSLGFAALAVVFHTLIIIPWQAARAARL
RGGWASVSVEEDSPFNRAGCDLIRIDAASLDKAAFERLYRGQRPLVLTST
SSPLVFASRRQWPFVNGKAKEGVEAWEKEGLLARHGQNLTVLVGGIELWE
QEEVGEEGMMGLGLVKRRRRRRESTLSGTCESSRSSSGGGIRLPLAEYIT
RYFDAKESEDAAVEEENEEEEKEMEVARTALASWRVSDLPAELARAVQTP
PQFRGWWVRNDEKQQQLQQHEHQQGETSHKDAHDHVRIILGKELEGKAWT
ASDREEWTGLLLGGSVLWSFYPPGQGLQNMTMPGKGHCLLGPLEWVLSTL
DALVDHEGVSDPEEGRMDPPPLECWQRPGDVVLATLQHQPRDFEALIAAG
KAYVRQASRILSSPAESADAAGTAGAGEETSLLKEALWCFRTAAVVRPCD
PTPHLHAAQVLLTMGGTNEYEQAKALIHTAEEEFFTASSPTCPFPSHVPH
GRVLALLAEARLRFARFFIQAGDEVEGRRALAEVLALRPTYLEAHQLLVT
MLREVGNGEEAREAMRRALVALGPRGQDERVVKAFEGLLTSRQM*
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mRNA from alignment at chr25:320435..322356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01170.1 ID=NO25G01170.1|Name=NO25G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1922bp|location=Sequence derived from alignment at chr25:320435..322356- (Nannochloropsis oceanica)
ATGGCCCGGCAGACACGCCCCATCCACCATCGCCAGTCCCTGTGGGCATC
TTTGTCCTCCCTTCTCCTCTCATTGGGTTTTGCCGCCTTGGCCGTTGTCT
TTCACACCTTGATCATCATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTG
AGAGGAGGGTGGGCCTCGGTATCGGTCGAGGAAGACTCGCCTTTCAACCG
TGCAGGATGTGATTTGATACGGATTGACGCCGCCAGCCTCGACAAGGCAG
CGTTCGAACGTTTGTATCGTGGACAGCGTCCACTGGTTTTGACTTCAACG
TCATCCCCCCTTGTGTTTGCGAGCAGGCGTCAATGGCCTTTTGTCAATGG
CAAGGCGAAAGAGGGGGTGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCC
GACATGGACAGAATTTGACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAA
CAGGAGGAAGTGGGAGAGGAAGGAATGATGGGATTGGGTTTGGTGAAGAG
GAGGAGGAGAAGAAGAGAGAGCACATTGTCGGGTACCTGCGAGAGCAGTA
GGAGCAGCAGTGGTGGTGGAATCCGCTTGCCACTTGCAGAGTACATCACC
AGATACTTCGACGCAAAAGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAA
CGAGGAAGAGGAGAAGGAAATGGAGGTGGCACGCACGGCCTTGGCTTCGT
GGCGTGTGAGCGACTTACCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCT
CCTCAGTTCCGCGGATGGTGGGTCAGAAACGACGAGAAACAACAGCAACT
ACAGCAGCACGAGCATCAGCAAGGGGAAACCTCCCACAAAGACGCGCACG
ACCACGTGCGGATCATCCTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACG
GCTTCAGACCGCGAGGAATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCT
CTGGTCCTTCTACCCTCCAGGGCAAGGGCTGCAAAACATGACTATGCCCG
GAAAAGGCCATTGTTTGCTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTG
GATGCCCTTGTCGATCATGAAGGAGTGTCGGATCCGGAGGAAGGGAGGAT
GGACCCCCCTCCTTTGGAGTGCTGGCAGCGGCCAGGGGATGTGGTGTACG
TACCCACGGGGTGGAAGAGTATGAGGGTGCATGTAGGGGGGGGCGTGGTA
CTGGTGGAGGGGAGGGGAGGAGAGGCGATTCGATGGAGGATGAAGGGGAG
GAAGGGAGGGAGGAGAGGGTGTTGCGGGCTAGTCTGGCGACGCTGCAGCA
CCAGCCACGGGATTTCGAAGCTCTGATAGCGGCAGGCAAAGCGTACGTGC
GCCAAGCCTCGAGGATTTTATCATCACCTGCAGAATCAGCAGACGCAGCA
GGCACAGCAGGAGCAGGAGAGGAAACATCGCTGTTAAAAGAAGCTCTGTG
GTGCTTCCGCACTGCTGCTGTAGTCCGCCCCTGTGACCCTACCCCCCATC
TCCATGCCGCCCAAGTCCTTCTCACCATGGGGGGTACGAATGAGTATGAG
CAGGCCAAGGCGTTGATTCATACGGCGGAAGAAGAGTTTTTTACCGCGTC
TTCCCCCACATGTCCTTTCCCTTCCCACGTGCCGCACGGACGCGTGCTGG
CTCTCCTGGCAGAGGCCCGTTTAAGGTTTGCGCGTTTTTTCATTCAGGCA
GGGGATGAGGTGGAGGGACGACGGGCCCTTGCTGAGGTTTTAGCATTGCG
ACCTACCTACCTAGAGGCACATCAACTGTTGGTGACGATGTTGAGGGAGG
TAGGGAATGGGGAGGAGGCGCGAGAGGCAATGAGACGCGCTCTTGTTGCC
CTGGGCCCGCGCGGACAGGATGAAAGAGTTGTAAAAGCCTTTGAGGGATT
GCTTACATCGCGACAGATGTAA
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Coding sequence (CDS) from alignment at chr25:320435..322356-

>NO25G01170.1 ID=NO25G01170.1|Name=NO25G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at chr25:320435..322356- (Nannochloropsis oceanica)
ATGGCCCGGCAGACACGCCCCATCCACCATCGCCAGTCCCTGTGGGCATC
TTTGTCCTCCCTTCTCCTCTCATTGGGTTTTGCCGCCTTGGCCGTTGTCT
TTCACACCTTGATCATCATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTG
AGAGGAGGGTGGGCCTCGGTATCGGTCGAGGAAGACTCGCCTTTCAACCG
TGCAGGATGTGATTTGATACGGATTGACGCCGCCAGCCTCGACAAGGCAG
CGTTCGAACGTTTGTATCGTGGACAGCGTCCACTGGTTTTGACTTCAACG
TCATCCCCCCTTGTGTTTGCGAGCAGGCGTCAATGGCCTTTTGTCAATGG
CAAGGCGAAAGAGGGGGTGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCC
GACATGGACAGAATTTGACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAA
CAGGAGGAAGTGGGAGAGGAAGGAATGATGGGATTGGGTTTGGTGAAGAG
GAGGAGGAGAAGAAGAGAGAGCACATTGTCGGGTACCTGCGAGAGCAGTA
GGAGCAGCAGTGGTGGTGGAATCCGCTTGCCACTTGCAGAGTACATCACC
AGATACTTCGACGCAAAAGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAA
CGAGGAAGAGGAGAAGGAAATGGAGGTGGCACGCACGGCCTTGGCTTCGT
GGCGTGTGAGCGACTTACCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCT
CCTCAGTTCCGCGGATGGTGGGTCAGAAACGACGAGAAACAACAGCAACT
ACAGCAGCACGAGCATCAGCAAGGGGAAACCTCCCACAAAGACGCGCACG
ACCACGTGCGGATCATCCTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACG
GCTTCAGACCGCGAGGAATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCT
CTGGTCCTTCTACCCTCCAGGGCAAGGGCTGCAAAACATGACTATGCCCG
GAAAAGGCCATTGTTTGCTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTG
GATGCCCTTGTCGATCATGAAGGAGTGTCGGATCCGGAGGAAGGGAGGAT
GGACCCCCCTCCTTTGGAGTGCTGGCAGCGGCCAGGGGATGTGGTTCTGG
CGACGCTGCAGCACCAGCCACGGGATTTCGAAGCTCTGATAGCGGCAGGC
AAAGCGTACGTGCGCCAAGCCTCGAGGATTTTATCATCACCTGCAGAATC
AGCAGACGCAGCAGGCACAGCAGGAGCAGGAGAGGAAACATCGCTGTTAA
AAGAAGCTCTGTGGTGCTTCCGCACTGCTGCTGTAGTCCGCCCCTGTGAC
CCTACCCCCCATCTCCATGCCGCCCAAGTCCTTCTCACCATGGGGGGTAC
GAATGAGTATGAGCAGGCCAAGGCGTTGATTCATACGGCGGAAGAAGAGT
TTTTTACCGCGTCTTCCCCCACATGTCCTTTCCCTTCCCACGTGCCGCAC
GGACGCGTGCTGGCTCTCCTGGCAGAGGCCCGTTTAAGGTTTGCGCGTTT
TTTCATTCAGGCAGGGGATGAGGTGGAGGGACGACGGGCCCTTGCTGAGG
TTTTAGCATTGCGACCTACCTACCTAGAGGCACATCAACTGTTGGTGACG
ATGTTGAGGGAGGTAGGGAATGGGGAGGAGGCGCGAGAGGCAATGAGACG
CGCTCTTGTTGCCCTGGGCCCGCGCGGACAGGATGAAAGAGTTGTAAAAG
CCTTTGAGGGATTGCTTACATCGCGACAGATGTAA
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Synonyms
Publications