NO25G01170, NO25G01170 (gene) Nannochloropsis oceanica

Overview
NameNO25G01170
Unique NameNO25G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1922
Alignment locationchr25:320435..322356 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:320435..322356 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Homology
[Close]
BLAST of NO25G01170 vs. NCBI_GenBank
Match: EWM21569.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 3.500e-53
Identity = 130/280 (46.43%), Postives = 157/280 (56.07%), Query Frame = 0 
Query:  360 SDPEEGRMDPPPLECWQRPGDVVLA-----------------------------------------------TLQHQPRDFEALIAAGKAYVRQASRILSSPAESADAAGTAGAGEETSLLKEALWCFRTAAVVRPCDPTPHLHAAQVLL---TMGGTNEYEQAKALIHTAEEEFFTASSPTCPFPSHVPHGRVLALLAEARLRFARFFIQAGDEVEGRRALAEVLALRPTYLEAHQLLVTMLREVGNGEEAREAMRRALVALGPRGQDERVVKAFEGLL 590
            S P  G MDPPPL+CWQ PGD+V                                                  L   P D E+LIAAG+AY RQ+ R  ++                 SL +E+  C  TA  +RPCDPT HL AAQVLL   +      + QAKA+IH AEE FFT SSP+CPFP  +P  RV ALLA ARLRFA+FF+  GDE E +RA+AEVLALRPTYLEAHQLLV +L++ G   EAREAM  AL+ALGPRG++  V++AFE LL
Sbjct:  129 SGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTV-------------NRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPD-LPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLL 394
The following BLAST results are available for this feature:
BLAST of NO25G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21569.13.500e-5346.43Tetratricopeptide-like helical [Nannochloropsis ga... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004313NSK004313Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01170.1NO25G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|210178gene_8603Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g21gene8795Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01170.1NO25G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01170 ID=NO25G01170|Name=NO25G01170|organism=Nannochloropsis oceanica|type=gene|length=1922bp
ATGGCCCGGCAGACACGCCCCATCCACCATCGCCAGTCCCTGTGGGCATC
TTTGTCCTCCCTTCTCCTCTCATTGGGTTTTGCCGCCTTGGCCGTTGTCT
TTCACACCTTGATCATCATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTG
AGAGGAGGGTGGGCCTCGGTATCGGTCGAGGAAGACTCGCCTTTCAACCG
TGCAGGATGTGATTTGATACGGATTGACGCCGCCAGCCTCGACAAGGCAG
CGTTCGAACGTTTGTATCGTGGACAGCGTCCACTGGTTTTGACTTCAACG
TCATCCCCCCTTGTGTTTGCGAGCAGGCGTCAATGGCCTTTTGTCAATGG
CAAGGCGAAAGAGGGGGTGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCC
GACATGGACAGAATTTGACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAA
CAGGAGGAAGTGGGAGAGGAAGGAATGATGGGATTGGGTTTGGTGAAGAG
GAGGAGGAGAAGAAGAGAGAGCACATTGTCGGGTACCTGCGAGAGCAGTA
GGAGCAGCAGTGGTGGTGGAATCCGCTTGCCACTTGCAGAGTACATCACC
AGATACTTCGACGCAAAAGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAA
CGAGGAAGAGGAGAAGGAAATGGAGGTGGCACGCACGGCCTTGGCTTCGT
GGCGTGTGAGCGACTTACCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCT
CCTCAGTTCCGCGGATGGTGGGTCAGAAACGACGAGAAACAACAGCAACT
ACAGCAGCACGAGCATCAGCAAGGGGAAACCTCCCACAAAGACGCGCACG
ACCACGTGCGGATCATCCTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACG
GCTTCAGACCGCGAGGAATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCT
CTGGTCCTTCTACCCTCCAGGGCAAGGGCTGCAAAACATGACTATGCCCG
GAAAAGGCCATTGTTTGCTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTG
GATGCCCTTGTCGATCATGAAGGAGTGTCGGATCCGGAGGAAGGGAGGAT
GGACCCCCCTCCTTTGGAGTGCTGGCAGCGGCCAGGGGATGTGGTgtacg
tacccacggggtggaagagtatgagggtgcatgtaggggggggcgtggta
ctggtggaggggaggggaggagaggcgattcgatggaggatgaaggggag
gaagggagggaggagagggtgttgcgggctagTCTGGCGACGCTGCAGCA
CCAGCCACGGGATTTCGAAGCTCTGATAGCGGCAGGCAAAGCGTACGTGC
GCCAAGCCTCGAGGATTTTATCATCACCTGCAGAATCAGCAGACGCAGCA
GGCACAGCAGGAGCAGGAGAGGAAACATCGCTGTTAAAAGAAGCTCTGTG
GTGCTTCCGCACTGCTGCTGTAGTCCGCCCCTGTGACCCTACCCCCCATC
TCCATGCCGCCCAAGTCCTTCTCACCATGGGGGGTACGAATGAGTATGAG
CAGGCCAAGGCGTTGATTCATACGGCGGAAGAAGAGTTTTTTACCGCGTC
TTCCCCCACATGTCCTTTCCCTTCCCACGTGCCGCACGGACGCGTGCTGG
CTCTCCTGGCAGAGGCCCGTTTAAGGTTTGCGCGTTTTTTCATTCAGGCA
GGGGATGAGGTGGAGGGACGACGGGCCCTTGCTGAGGTTTTAGCATTGCG
ACCTACCTACCTAGAGGCACATCAACTGTTGGTGACGATGTTGAGGGAGG
TAGGGAATGGGGAGGAGGCGCGAGAGGCAATGAGACGCGCTCTTGTTGCC
CTGGGCCCGCGCGGACAGGATGAAAGAGTTGTAAAAGCCTTTGAGGGATT
GCTTACATCGCGACAGATGTAA
back to top

protein sequence of NO25G01170.1

>NO25G01170.1-protein ID=NO25G01170.1-protein|Name=NO25G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MARQTRPIHHRQSLWASLSSLLLSLGFAALAVVFHTLIIIPWQAARAARL
RGGWASVSVEEDSPFNRAGCDLIRIDAASLDKAAFERLYRGQRPLVLTST
SSPLVFASRRQWPFVNGKAKEGVEAWEKEGLLARHGQNLTVLVGGIELWE
QEEVGEEGMMGLGLVKRRRRRRESTLSGTCESSRSSSGGGIRLPLAEYIT
RYFDAKESEDAAVEEENEEEEKEMEVARTALASWRVSDLPAELARAVQTP
PQFRGWWVRNDEKQQQLQQHEHQQGETSHKDAHDHVRIILGKELEGKAWT
ASDREEWTGLLLGGSVLWSFYPPGQGLQNMTMPGKGHCLLGPLEWVLSTL
DALVDHEGVSDPEEGRMDPPPLECWQRPGDVVLATLQHQPRDFEALIAAG
KAYVRQASRILSSPAESADAAGTAGAGEETSLLKEALWCFRTAAVVRPCD
PTPHLHAAQVLLTMGGTNEYEQAKALIHTAEEEFFTASSPTCPFPSHVPH
GRVLALLAEARLRFARFFIQAGDEVEGRRALAEVLALRPTYLEAHQLLVT
MLREVGNGEEAREAMRRALVALGPRGQDERVVKAFEGLLTSRQM*
back to top
Synonyms
Publications