NO25G00800.1, NO25G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00800.1
Unique NameNO25G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2642
Alignment locationchr25:220463..223527 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:220463..223527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00800.1 vs.
Match: EWM21627.1 (charged multivesicular body protein [Nannochloropsis gaditana])

HSP 1 Score: 344.0 bits (881), Expect = 3.600e-91
Identity = 191/208 (91.83%), Postives = 195/208 (93.75%), Query Frame = 0 
Query:    1 MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELMGDMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPASA---AAAAKVNPQREMQALG 206
            MGNMWAKKPLKEIMRENKRMI RAIRELDRER NLE+NEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMA+AMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSEL G+MLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVP +A   AAA     QRE QALG
Sbjct:    9 MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALG 216
The following BLAST results are available for this feature:
BLAST of NO25G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21627.13.600e-9191.83charged multivesicular body protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00800NO25G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00800.1NO25G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00800.1.cds1NO25G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00800.1.cds2NO25G00800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00800.1 ID=NO25G00800.1|Name=NO25G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2642bp
CTCGTGAGAGACTCTCCGACAGAGGAGGTTACGTGTAAACTTACACGGTG
CTCAATGACGGCGATTTCCGAGCGAAAAATAGCAATTCATACACTTCCTT
TCCTTTTATGGCCCTCTAGCACGCAATATCCCCGACACACAATTCAGGAT
GCGTTGCACGTACAGGAGCGTCGGTAGGGTAGCAATTCGGTGTCGCTTGT
TTGCAAGTCCACTTCCACGTGGATGAGCACCATCATCTAACCCACACTCC
CGCATCCCTACACCTTTACCCACACCCGCAGGGCCCTTGAGAGGGCCATC
TACTTGCGGGACATCTTCAGCAAGACGTAGAGCTCGATCAAGTTGCAAGC
ATGGGTAACATGTGGGCGAAAAAGCCTCTCAAGGAAATAATGCGTGAGAA
CAAGCGCATGATCACGCGGGCCATCCGCGAGCTGGACCGGGAACGAGTGA
ACCTGGAAAGGAACGAGAAGAAGTTGATTATGGATATTAAAAAATATGCC
AAAGAAAACCAGATGGGTGCTGTAAAGACCATGGCCAAGGATTTGGTTCG
CACGCGAAACTACCAGACCAAGTTCATCGAAATGCGTTCCCACCTCCAAG
GCGCCGCGCTTAAGCTCGAGACTGTCCGTTCACACGAAGCCATGGCCACG
GCCATGCGGAGCGTTACATCTGCGATGGTCAGTATGAATAAACAAGTGAA
TGTCCCGGCCTTGACAAAGATAATGACGGACTTTGCGCGCGAAAACGAGA
AAAGCGAGCTTATGGGAGATATGCTTGGAGATGCCATGGACGACGCTATG
ACGGAGGAAGGGGACGAGGAAGAGCAGGAAAGGATTGTTGGGGCGGTGTT
GACAGAATTGGGCTTGGACATGACAGATGCCGTCCCCGAGGCTCCAGGGG
CTGTTCCTGCCTCTGCGGCAGCGGCTGCCAAAGTTAACCCGCAAAGAGAG
ATGCAGGCACTGGGAGGAGGAAGTGGAGGGGGGCCAGGGGGGGGGGAGGG
GGAGGGGCGGTGGACCCGGCGATGAGCGATTTGGAAGCACGGCTGAATAA
CTTGAGGCGGGAAGGGTAACGAGGGGAGGGAAGCAGGGAGGGGGGACGGG
ATGTGTCTTCTGGGTATATGTGTATACATGAAGAAGCCACGATATTGGTA
AATTTGACACGAAACTGGTAACGGAGCGAAGGAAAGATTTTTAAAAAAAT
GACATTTGAAATAACGACTACCACTTGGGTGCTCAATATAAATTGTTCCG
TTAAAATGGCGGAGAAACGAATGAGGGGGCTACGTTATATATTGCTTGCG
GTCTGACCCCTTGGGATGACGATGAAAAAATGCAAGAGGGTGTAACTGTT
CTTTTTACAAAGTTGTCTATGCGATCTTTTCCTATGATCTCATCACCCCG
TTCAAGAGAAATTGAGCGAACAAGGCCGAAGCGCATCAGTACTCCCACAC
AGGCAAGTCTTTAAGTGACTCGTCCGACCGACAGCACACGTGTCAATACG
CATGCATCCAGCTCCATGCCCTGTAACTGGTAAAATTGACCCTGGCAAGC
CATTACCAGTGACTCCTGTCTTCCTGTCAGCCGCGGTCGAGAGGCATGCA
GATTGCCTCGCAAGCAATTATATGCGCAACACAACCAACACGCAAGACGG
GAAACGGACACAGCAACACAGTATGTATGGCTTGCCTTCCTTCCCGTCAG
GTAACAAGTGAAAAGCCTCTTTCACGCCCTGTCCCACAAATGGATAGTCA
AGAGGTCTCAAACATCCCCAGAAAAAGCAAAAGCAAGACGATTAGAGAGT
CAGCGGGGTCAAGGCATTGAGTGATTAAATGAGAGGCCTGAAAAGGCCTC
TGTTGCTGTTTAGTGTTTTTTGATTTAAAACAACCCGGAAAGCGTTTAGC
TGGACGAGGTGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGC
TTGGCCAGCTCACCGGGGAGGGTGAGGCGGACTGCCGTCTGCACCTCGCG
GGAGGAGAGGGTAGACTTCTTGGTGTAGCGGGCCAGCTTGCCGGCCTCTG
TGGCGAGGCGGTCGAAGATGTCACCGATGAAGGAGTTCAAGATGGACACG
CCACGCTTGGAGATACCAGTGTCGGGGTGCACCTGCTTGAGGACCTTGTA
GATGTAGGAGCCATAGCTCTCCACGCGGGTCTTCTTCTTGGTGCCCTTGC
CGGCCTTCTTCGGGGCCTTGGCGGACTTTTTGGAGGGTGTCTTGGCCATG
GTTTAAGTGGTGTTGAAAAGGTGGTCTGTTGTCATGCGGGAGGAAAGGGT
AAAGGTGGGTGTTTGGTTACGAGTGTGTACATCGGAACGACTGTTCCGCT
GGCGGGCATTGAGTGTGAGGAGGTGTGCTGGGCGCTTGCTCGTGTCTAAT
GGTGGAACTCAGGTAGGGGAGGGTGGAGTGCATGGGGCGGGAAACTACCT
GACCCCGTAAGGGCACAACACAGGGGAGGGGAGGGCCAATCCAATCGTGC
ATTGGAGGATGCGGCACGATTGCGTGAGTGAGTATTTGTCTGAAGAGCAA
GTGGGTATAAACAGAAGGGACGAGGGTACATCGCCACACACTCGAGGCAG
AAGTCACAAGCCGAAGCATTAACATTAGAACGGAAAGGGAAG
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protein sequence of NO25G00800.1

>NO25G00800.1-protein ID=NO25G00800.1-protein|Name=NO25G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYA
KENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMAT
AMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELMGDMLGDAMDDAM
TEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPASAAAAAKVNPQRE
MQALGGGSGGGPGGGEGEGRWTRR*
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mRNA from alignment at chr25:220463..223527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00800.1 ID=NO25G00800.1|Name=NO25G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=3065bp|location=Sequence derived from alignment at chr25:220463..223527- (Nannochloropsis oceanica)
CTCGTGAGAGACTCTCCGACAGAGGAGGTTACGTGTAAACTTACACGGTG
CTCAATGACGGCGATTTCCGAGCGAAAAATAGCAATTCATACACTTCCTT
TCCTTTTATGGCCCTCTAGCACGCAATATCCCCGACACACAATTCAGGAT
GCGTTGCACGTACAGGAGCGTCGGTAGGGTAGCAATTCGGTGTCGCTTGT
TTGCAAGTCCACTTCCACGTGGATGAGCACCATCATCTAACCCACACTCC
CGCATCCCTACACCTTTACCCACACCCGCAGGGCCCTTGAGAGGGCCATC
TACTTGCGGGACATCTTCAGCAAGACGTAGAGCTCGATCAAGGTAAGGCG
AAGAACAGGGTTACAAGAGATGAAAATGGAATAGTCACATGGGCTGGTTG
CATCAAGCGGAGAGTCTGCTGCTTCTGCTACGGCCGAAAGAAGTACCACA
CACGCAACCGACACGCACCACACCAATCCGGCAGGCTCACCCCTTTTTTT
CTTTTCTTTCAACAAGTAGTTGCAAGCATGGGTAACATGTGGGCGAAAAA
GCCTCTCAAGGAAATAATGCGTGAGAACAAGCGCATGATCACGCGGGCCA
TCCGCGAGCTGGACCGGGAACGAGTGAACCTGGAAAGGAACGAGAAGAAG
TTGATTATGGATATTAAAAAATATGCCAAAGAAAACCAGATGGGTGCTGT
AAAGACCATGGCCAAGGATTTGGTTCGCACGCGGTAGGTGGATGTGTGTT
GTGGTGTGATGGGACGGGTGGTGGGGCGAAAGGAGGGTTCTGTGGAAGAA
AGTTTTTTGTAATTTTAATTATTTACCCCTTCATCGTTGGACACTTGTGT
ACGGCAAAGGGATTGAATGTAAGCTTTAGATTTATTTCTTATGTTGAAAA
ATCTATTTCCGCCTTCACATCGCTTCCGTCAAAGCTCATCATGTCTCCCT
CCCGCCCTCCCGCCCTTCCCCCCCCTTAGAAACTACCAGACCAAGTTCAT
CGAAATGCGTTCCCACCTCCAAGGCGCCGCGCTTAAGCTCGAGACTGTCC
GTTCACACGAAGCCATGGCCACGGCCATGCGGAGCGTTACATCTGCGATG
GTCAGTATGAATAAACAAGTGAATGTCCCGGCCTTGACAAAGATAATGAC
GGACTTTGCGCGCGAAAACGAGAAAAGCGAGCTTATGGGAGATATGCTTG
GAGATGCCATGGACGACGCTATGACGGAGGAAGGGGACGAGGAAGAGCAG
GAAAGGATTGTTGGGGCGGTGTTGACAGAATTGGGCTTGGACATGACAGA
TGCCGTCCCCGAGGCTCCAGGGGCTGTTCCTGCCTCTGCGGCAGCGGCTG
CCAAAGTTAACCCGCAAAGAGAGATGCAGGCACTGGGAGGAGGAAGTGGA
GGGGGGCCAGGGGGGGGGGAGGGGGAGGGGCGGTGGACCCGGCGATGAGC
GATTTGGAAGCACGGCTGAATAACTTGAGGCGGGAAGGGTAACGAGGGGA
GGGAAGCAGGGAGGGGGGACGGGATGTGTCTTCTGGGTATATGTGTATAC
ATGAAGAAGCCACGATATTGGTAAATTTGACACGAAACTGGTAACGGAGC
GAAGGAAAGATTTTTAAAAAAATGACATTTGAAATAACGACTACCACTTG
GGTGCTCAATATAAATTGTTCCGTTAAAATGGCGGAGAAACGAATGAGGG
GGCTACGTTATATATTGCTTGCGGTCTGACCCCTTGGGATGACGATGAAA
AAATGCAAGAGGGTGTAACTGTTCTTTTTACAAAGTTGTCTATGCGATCT
TTTCCTATGATCTCATCACCCCGTTCAAGAGAAATTGAGCGAACAAGGCC
GAAGCGCATCAGTACTCCCACACAGGCAAGTCTTTAAGTGACTCGTCCGA
CCGACAGCACACGTGTCAATACGCATGCATCCAGCTCCATGCCCTGTAAC
TGGTAAAATTGACCCTGGCAAGCCATTACCAGTGACTCCTGTCTTCCTGT
CAGCCGCGGTCGAGAGGCATGCAGATTGCCTCGCAAGCAATTATATGCGC
AACACAACCAACACGCAAGACGGGAAACGGACACAGCAACACAGTATGTA
TGGCTTGCCTTCCTTCCCGTCAGGTAACAAGTGAAAAGCCTCTTTCACGC
CCTGTCCCACAAATGGATAGTCAAGAGGTCTCAAACATCCCCAGAAAAAG
CAAAAGCAAGACGATTAGAGAGTCAGCGGGGTCAAGGCATTGAGTGATTA
AATGAGAGGCCTGAAAAGGCCTCTGTTGCTGTTTAGTGTTTTTTGATTTA
AAACAACCCGGAAAGCGTTTAGCTGGACGAGGTGTACTTGGTGACGGCCT
TGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCACCGGGGAGGGTGAGG
CGGACTGCCGTCTGCACCTCGCGGGAGGAGAGGGTAGACTTCTTGGTGTA
GCGGGCCAGCTTGCCGGCCTCTGTGGCGAGGCGGTCGAAGATGTCACCGA
TGAAGGAGTTCAAGATGGACACGCCACGCTTGGAGATACCAGTGTCGGGG
TGCACCTGCTTGAGGACCTTGTAGATGTAGGAGCCATAGCTCTCCACGCG
GGTCTTCTTCTTGGTGCCCTTGCCGGCCTTCTTCGGGGCCTTGGCGGACT
TTTTGGAGGGTGTCTTGGCCATGGTTTAAGTGGTGTTGAAAAGGTGGTCT
GTTGTCATGCGGGAGGAAAGGGTAAAGGTGGGTGTTTGGTTACGAGTGTG
TACATCGGAACGACTGTTCCGCTGGCGGGCATTGAGTGTGAGGAGGTGTG
CTGGGCGCTTGCTCGTGTCTAATGGTGGAACTCAGGTAGGGGAGGGTGGA
GTGCATGGGGCGGGAAACTACCTGACCCCGTAAGGGCACAACACAGGGGA
GGGGAGGGCCAATCCAATCGTGCATTGGAGGATGCGGCACGATTGCGTGA
GTGAGTATTTGTCTGAAGAGCAAGTGGGTATAAACAGAAGGGACGAGGGT
ACATCGCCACACACTCGAGGCAGAAGTCACAAGCCGAAGCATTAACATTA
GAACGGAAAGGGAAG
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Coding sequence (CDS) from alignment at chr25:220463..223527-

>NO25G00800.1 ID=NO25G00800.1|Name=NO25G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr25:220463..223527- (Nannochloropsis oceanica)
ATGGGTAACATGTGGGCGAAAAAGCCTCTCAAGGAAATAATGCGTGAGAA
CAAGCGCATGATCACGCGGGCCATCCGCGAGCTGGACCGGGAACGAGTGA
ACCTGGAAAGGAACGAGAAGAAGTTGATTATGGATATTAAAAAATATGCC
AAAGAAAACCAGATGGGTGCTGTAAAGACCATGGCCAAGGATTTGGTTCG
CACGCGAAACTACCAGACCAAGTTCATCGAAATGCGTTCCCACCTCCAAG
GCGCCGCGCTTAAGCTCGAGACTGTCCGTTCACACGAAGCCATGGCCACG
GCCATGCGGAGCGTTACATCTGCGATGGTCAGTATGAATAAACAAGTGAA
TGTCCCGGCCTTGACAAAGATAATGACGGACTTTGCGCGCGAAAACGAGA
AAAGCGAGCTTATGGGAGATATGCTTGGAGATGCCATGGACGACGCTATG
ACGGAGGAAGGGGACGAGGAAGAGCAGGAAAGGATTGTTGGGGCGGTGTT
GACAGAATTGGGCTTGGACATGACAGATGCCGTCCCCGAGGCTCCAGGGG
CTGTTCCTGCCTCTGCGGCAGCGGCTGCCAAAGTTAACCCGCAAAGAGAG
ATGCAGGCACTGGGAGGAGGAAGTGGAGGGGGGCCAGGGGGGGGGGAGGG
GGAGGGGCGGTGGACCCGGCGATGA
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Synonyms
Publications