NO25G00800, NO25G00800 (gene) Nannochloropsis oceanica

Overview
NameNO25G00800
Unique NameNO25G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3065
Alignment locationchr25:220463..223527 -

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Properties
Property NameValue
DescriptionCharged multivesicular body protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:220463..223527 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of NO25G00800 vs. NCBI_GenBank
Match: EWM21627.1 (charged multivesicular body protein [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 8.700e-45
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0
Query:    1 MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSV 106
            MGNMWAKKPLKEIMRENKRMI RAIRELDRER NLE+NEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMA+AMRSV
Sbjct:    9 MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSV 113          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: EWM21628.1 (charged multivesicular body protein [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 8.700e-45
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0
Query:    1 MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSV 106
            MGNMWAKKPLKEIMRENKRMI RAIRELDRER NLE+NEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMA+AMRSV
Sbjct:    1 MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSV 105          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: CBN73857.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 169.9 bits (429), Expect = 9.300e-39
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0
Query:    7 KKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            KKPLKEI+RENKR ITRA+R++DRE+ NLE+ EKKL+ +IKK AK  QMGAVK +AKDLVRTRNY TKFIE RSHLQG  LKLETVRSHEAMA AM+ VT AMVS+NKQVNVPAL KI
Sbjct:   11 KKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKI 128          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: XP_002183441.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45141.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 164.1 bits (414), Expect = 5.100e-37
Identity = 87/125 (69.60%), Postives = 104/125 (83.20%), Query Frame = 0
Query:    1 MGNMWAK-KPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN+W + KPLKE++RENKRMI RA+RELDRE+  LER EK+L ++IKK AKENQM +VK MAKDLVRTR Y TKFIEMRSHLQG ALKL+TV+SH+AMA AM++   AM  MNK VNVP +TK+
Sbjct:    1 MGNVWGRDKPLKEVLRENKRMINRAVRELDREKAGLEREEKRLTIEIKKAAKENQMQSVKIMAKDLVRTRQYITKFIEMRSHLQGCALKLQTVKSHQAMAEAMQNTAKAMGKMNKAVNVPTITKM 125          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: OEU23706.1 (Snf7-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 162.9 bits (411), Expect = 1.100e-36
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0
Query:    1 MGNMWAK-KPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN+  K KPLKE++RENKRMITRAIRELDRE+  LER EKKL M+IKK AK  QMG VK MAKDLVRTR Y TKFIEMRSHLQG ALKL+TV+SH AMA AM+S  SAM  MNK V+VPA+ K+
Sbjct:    1 MGNILGKDKPLKEVLRENKRMITRAIRELDREKTGLEREEKKLTMEIKKCAKAGQMGPVKIMAKDLVRTRQYITKFIEMRSHLQGCALKLQTVKSHHAMAEAMKSTASAMHKMNKAVDVPAINKM 125          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: XP_009032350.1 (hypothetical protein AURANDRAFT_18982 [Aureococcus anophagefferens] >EGB12696.1 hypothetical protein AURANDRAFT_18982 [Aureococcus anophagefferens])

HSP 1 Score: 161.0 bits (406), Expect = 4.300e-36
Identity = 86/125 (68.80%), Postives = 104/125 (83.20%), Query Frame = 0
Query:    1 MGNMWAKK-PLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN W +K PLKE++R+NKR I +A+RELDRER NLE+ E+KLI DIKKYA + QMG+VK MAKDLVRTR Y TKFIE+RSHL   +LKL+TV+S EAMA+AM+SVT AM+ MNK VNVPA+ KI
Sbjct:    1 MGNTWGRKVPLKEVLRKNKREINKAMRELDRERANLEKQEQKLIADIKKYAGQGQMGSVKIMAKDLVRTRTYITKFIELRSHLGAVSLKLQTVKSQEAMASAMKSVTQAMIKMNKTVNVPAVQKI 125          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: XP_002780352.1 (Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983] >EER12147.1 Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 151.0 bits (380), Expect = 4.500e-33
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    1 MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN  +K  L+E MR NKRMI RA+RELDRER+ L+RNE+KLI DIK+ AK+NQMG VK MAKDLVRTR Y++KF+EM+SHLQG +L+++TV+S EAMA +M+  T AM  MNKQ+N+P L KI
Sbjct:    1 MGNQSSKLTLEEQMRANKRMINRAVRELDRERMGLQRNEQKLITDIKQAAKKNQMGPVKIMAKDLVRTRRYESKFLEMKSHLQGVSLRMQTVKSTEAMARSMKGCTQAMARMNKQLNLPQLQKI 124          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: XP_002780871.1 (Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983] >EER12666.1 Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 151.0 bits (380), Expect = 4.500e-33
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    1 MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN  +K  L+E MR NKRMI RA+RELDRER+ L+RNE+KLI DIK+ AK+NQMG VK MAKDLVRTR Y++KF+EM+SHLQG +L+++TV+S EAMA +M+  T AM  MNKQ+N+P L KI
Sbjct:    1 MGNQSSKLTLEEQMRANKRMINRAVRELDRERMGLQRNEQKLITDIKQAAKKNQMGPVKIMAKDLVRTRRYESKFLEMKSHLQGVSLRMQTVKSTEAMARSMKGCTQAMARMNKQLNLPQLQKI 124          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: XP_002775819.1 (Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983] >EER07635.1 Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 150.2 bits (378), Expect = 7.600e-33
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    1 MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN  +K  L+E MR NKRMI RA+RELDRER+ L+RNE+KLI DIK+ AK+NQMG VK MAKDLVRTR Y++KF+EM+SHLQG +L+++TV+S EAMA +M+  T AM  MNKQ+N+P L KI
Sbjct:    1 MGNQPSKLTLEEQMRANKRMINRAVRELDRERMGLQRNEQKLITDIKQAAKKNQMGPVKIMAKDLVRTRRYESKFMEMKSHLQGVSLRMQTVKSTEAMARSMKGCTQAMARMNKQLNLPQLQKI 124          
BLAST of NO25G00800 vs. NCBI_GenBank
Match: XP_012197832.1 (hypothetical protein SPRG_03845 [Saprolegnia parasitica CBS 223.65] >KDO31227.1 hypothetical protein SPRG_03845 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 132.1 bits (331), Expect = 2.100e-27
Identity = 76/125 (60.80%), Postives = 95/125 (76.00%), Query Frame = 0
Query:    1 MGNMWAK-KPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMATAMRSVTSAMVSMNKQVNVPALTKI 125
            MGN+ AK K LKE +RENKR I RAIR+LDRER NL+  EKKLI++IKK AKENQ+ +VK MAKDLVRTR + TKF  MRS LQ  +L++ET +S EAM +A+++ T  M SM K +N+P L KI
Sbjct:    1 MGNLGAKPKTLKEQLRENKREINRAIRDLDRERTNLQMAEKKLIIEIKKMAKENQIASVKIMAKDLVRTRQHITKFYTMRSQLQAVSLRMETAKSAEAMTSALQNTTKVMKSMAKTMNLPKLNKI 125          
The following BLAST results are available for this feature:
BLAST of NO25G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21627.18.700e-4596.19charged multivesicular body protein [Nannochlorops... [more]
EWM21628.18.700e-4596.19charged multivesicular body protein [Nannochlorops... [more]
CBN73857.19.300e-3977.12conserved unknown protein [Ectocarpus siliculosus][more]
XP_002183441.15.100e-3769.60predicted protein, partial [Phaeodactylum tricornu... [more]
OEU23706.11.100e-3672.80Snf7-domain-containing protein [Fragilariopsis cyl... [more]
XP_009032350.14.300e-3668.80hypothetical protein AURANDRAFT_18982 [Aureococcus... [more]
XP_002780352.14.500e-3364.52Charged multivesicular body protein 2A, putative [... [more]
XP_002780871.14.500e-3364.52Charged multivesicular body protein 2A, putative [... [more]
XP_002775819.17.600e-3364.52Charged multivesicular body protein 2A, putative [... [more]
XP_012197832.12.100e-2760.80hypothetical protein SPRG_03845 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004348NSK004348Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00800.1NO25G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656395gene_8566Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g56gene8829Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00800.1NO25G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00800 ID=NO25G00800|Name=NO25G00800|organism=Nannochloropsis oceanica|type=gene|length=3065bp
CTCGTGAGAGACTCTCCGACAGAGGAGGTTACGTGTAAACTTACACGGTG
CTCAATGACGGCGATTTCCGAGCGAAAAATAGCAATTCATACACTTCCTT
TCCTTTTATGGCCCTCTAGCACGCAATATCCCCGACACACAATTCAGGAT
GCGTTGCACGTACAGGAGCGTCGGTAGGGTAGCAATTCGGTGTCGCTTGT
TTGCAAGTCCACTTCCACGTGGATGAGCACCATCATCTAACCCACACTCC
CGCATCCCTACACCTTTACCCACACCCGCAGGGCCCTTGAGAGGGCCATC
TACTTGCGGGACATCTTCAGCAAGACGTAGAGCTCGATCAAGgtaaggcg
aagaacagggttacaagagatgaaaatggaatagtcacatgggctggttg
catcaagcggagagtctgctgcttctgctacggccgaaagaagtaccaca
cacgcaaccgacacgcaccacaccaatccggcaggctcaccccttttttt
cttttctttcaacaagtagTTGCAAGCATGGGTAACATGTGGGCGAAAAA
GCCTCTCAAGGAAATAATGCGTGAGAACAAGCGCATGATCACGCGGGCCA
TCCGCGAGCTGGACCGGGAACGAGTGAACCTGGAAAGGAACGAGAAGAAG
TTGATTATGGATATTAAAAAATATGCCAAAGAAAACCAGATGGGTGCTGT
AAAGACCATGGCCAAGGATTTGGTTCGCACGCGgtaggtggatgtgtgtt
gtggtgtgatgggacgggtggtggggcgaaaggagggttctgtggaagaa
agttttttgtaattttaattatttaccccttcatcgttggacacttgtgt
acggcaaagggattgaatgtaagctttagatttatttcttatgttgaaaa
atctatttccgccttcacatcgcttccgtcaaagctcatcatgtctccct
cccgccctcccgcccttccccccccttagAAACTACCAGACCAAGTTCAT
CGAAATGCGTTCCCACCTCCAAGGCGCCGCGCTTAAGCTCGAGACTGTCC
GTTCACACGAAGCCATGGCCACGGCCATGCGGAGCGTTACATCTGCGATG
GTCAGTATGAATAAACAAGTGAATGTCCCGGCCTTGACAAAGATAATGAC
GGACTTTGCGCGCGAAAACGAGAAAAGCGAGCTTATGGGAGATATGCTTG
GAGATGCCATGGACGACGCTATGACGGAGGAAGGGGACGAGGAAGAGCAG
GAAAGGATTGTTGGGGCGGTGTTGACAGAATTGGGCTTGGACATGACAGA
TGCCGTCCCCGAGGCTCCAGGGGCTGTTCCTGCCTCTGCGGCAGCGGCTG
CCAAAGTTAACCCGCAAAGAGAGATGCAGGCACTGGGAGGAGGAAGTGGA
GGGGGGCCAGGGGGGGGGGAGGGGGAGGGGCGGTGGACCCGGCGATGAGC
GATTTGGAAGCACGGCTGAATAACTTGAGGCGGGAAGGGTAACGAGGGGA
GGGAAGCAGGGAGGGGGGACGGGATGTGTCTTCTGGGTATATGTGTATAC
ATGAAGAAGCCACGATATTGGTAAATTTGACACGAAACTGGTAACGGAGC
GAAGGAAAGATTTTTAAAAAAATGACATTTGAAATAACGACTACCACTTG
GGTGCTCAATATAAATTGTTCCGTTAAAATGGCGGAGAAACGAATGAGGG
GGCTACGTTATATATTGCTTGCGGTCTGACCCCTTGGGATGACGATGAAA
AAATGCAAGAGGGTGTAACTGTTCTTTTTACAAAGTTGTCTATGCGATCT
TTTCCTATGATCTCATCACCCCGTTCAAGAGAAATTGAGCGAACAAGGCC
GAAGCGCATCAGTACTCCCACACAGGCAAGTCTTTAAGTGACTCGTCCGA
CCGACAGCACACGTGTCAATACGCATGCATCCAGCTCCATGCCCTGTAAC
TGGTAAAATTGACCCTGGCAAGCCATTACCAGTGACTCCTGTCTTCCTGT
CAGCCGCGGTCGAGAGGCATGCAGATTGCCTCGCAAGCAATTATATGCGC
AACACAACCAACACGCAAGACGGGAAACGGACACAGCAACACAGTATGTA
TGGCTTGCCTTCCTTCCCGTCAGGTAACAAGTGAAAAGCCTCTTTCACGC
CCTGTCCCACAAATGGATAGTCAAGAGGTCTCAAACATCCCCAGAAAAAG
CAAAAGCAAGACGATTAGAGAGTCAGCGGGGTCAAGGCATTGAGTGATTA
AATGAGAGGCCTGAAAAGGCCTCTGTTGCTGTTTAGTGTTTTTTGATTTA
AAACAACCCGGAAAGCGTTTAGCTGGACGAGGTGTACTTGGTGACGGCCT
TGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCACCGGGGAGGGTGAGG
CGGACTGCCGTCTGCACCTCGCGGGAGGAGAGGGTAGACTTCTTGGTGTA
GCGGGCCAGCTTGCCGGCCTCTGTGGCGAGGCGGTCGAAGATGTCACCGA
TGAAGGAGTTCAAGATGGACACGCCACGCTTGGAGATACCAGTGTCGGGG
TGCACCTGCTTGAGGACCTTGTAGATGTAGGAGCCATAGCTCTCCACGCG
GGTCTTCTTCTTGGTGCCCTTGCCGGCCTTCTTCGGGGCCTTGGCGGACT
TTTTGGAGGGTGTCTTGGCCATGGTTTAAGTGGTGTTGAAAAGGTGGTCT
GTTGTCATGCGGGAGGAAAGGGTAAAGGTGGGTGTTTGGTTACGAGTGTG
TACATCGGAACGACTGTTCCGCTGGCGGGCATTGAGTGTGAGGAGGTGTG
CTGGGCGCTTGCTCGTGTCTAATGGTGGAACTCAGGTAGGGGAGGGTGGA
GTGCATGGGGCGGGAAACTACCTGACCCCGTAAGGGCACAACACAGGGGA
GGGGAGGGCCAATCCAATCGTGCATTGGAGGATGCGGCACGATTGCGTGA
GTGAGTATTTGTCTGAAGAGCAAGTGGGTATAAACAGAAGGGACGAGGGT
ACATCGCCACACACTCGAGGCAGAAGTCACAAGCCGAAGCATTAACATTA
GAACGGAAAGGGAAG
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protein sequence of NO25G00800.1

>NO25G00800.1-protein ID=NO25G00800.1-protein|Name=NO25G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYA
KENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMAT
AMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELMGDMLGDAMDDAM
TEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPASAAAAAKVNPQRE
MQALGGGSGGGPGGGEGEGRWTRR*
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Synonyms
Publications