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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:184476..186578 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00670.1 vs.
Match: EWM21641.1 (Peroxin/Dysferlin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 135.6 bits (340), Expect = 6.000e-28 Identity = 107/233 (45.92%), Postives = 137/233 (58.80%), Query Frame = 0
Query: 12 EGQQQFRSVLLPSLAAEVEE-DGLLVAGMEGKTDSVSSSSSSSGLELLTPAEMDLLAAWQAGGSTRRKKRRIKKKNRLLQENYTHLLRSLRDEFIFKGFGLTLTKSLLRRDIGLGFGIPLTPNFMAWERIDFLPTINSNIGVFYPFCVSGWISISYPADLVLRFLAFFLPVLPVSHQSGFVTSSSSSSSSSSRSSSSSSSSSS-----------SSSSSSSSNSGSGSLSSFS 233
+ QQ R +LLP E E+ DG+L + S S +SSGL+LL A++ + R +K L L LR+E+ FKGF +TLTKSLL RDIG GFGIPLTPNF+ WERIDFLPTINS +G+F+PFCVSGWIS SYPADLV RFLA FLPVLP+ Q+ V SS+ S ++ + + S SS+S +S+ SG S S+F+
Sbjct: 221 DDSQQLRDILLPLSVEEGEQGDGILGEKYASDKNGDSISFTSSGLDLLAIADLPNIEC----------NRDVKSILSALS-TCRGFLNRLREEYQFKGFAVTLTKSLLHRDIGCGFGIPLTPNFLMWERIDFLPTINSCLGMFFPFCVSGWISFSYPADLVYRFLAHFLPVLPLGPQASMVLSSTGKHQSYTKMMTGDQRNCSVDHYGGGTFGESSTSDTSAGSGPPSASAFA 442
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00670.1 ID=NO25G00670.1|Name=NO25G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTGTGAGTGGGTGGATCAGCATCAGTTACCC
CGCCGACCTAGTGTTGCGGTTCTTGGCCTTCTTCTTGCCCGTGTTGCCGG
TGTCGCATCAGAGCGGTTTTGTCACGAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGAAGTAGTAGTAGTAGCAGTAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGTAGCAGCAATAGCGGCAGCGGCAGCTTATCCTCCTTCTCATTGA
TTTCGTCGATGCCTTCACCAGCACCAGCACCAGCACCAGCACCAGCAGCA
GCAGCAGCAGCACCAGCAGCAGCAGCCCCTCGATACGACGCTCCCTCCTC
CGATCCCGACTTGATTCGCCAGCAACGCGACATAACCGGAACAACATTAC
CAGCAGCAGCACCACCACCAGTATCAGCAGGAGCACCAGTATCAGCACCA
CAACCCACAGGAGGTACAAAACCAACAAGCCGCTCTCGGCGCCTTAAACG
TGCCAGCGTCGAACGCGTTGGATTCAGTCTCTCCTGCCGCTACACTCCTG
CACACGGTTTCTTCGTCCGTGTCACCCCCTGGTTATTCTTCCTCCCCGGC
CTACAGATCATTTCCCGTCTCCTCACTCAGATTATACATATGTTGACACA
TCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACG
AGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAAT
GGTACGGTCAGCAGCAAAAGCAGCGTCGGCAGTTTAAGTAGTTGTAGCAC
CAACAGCAGAAGCAGCAGCGGCAGGATTAAAAAACATGAGAAGACTTTAA
CGGCTCGACGCTTCAAGAAATGGGCCTCAAAAAAACACGGCGGCATCGGG
TACAGCATGTCTCTCTTTCGTGGAGGCTTAGGTGCATCCGTCCTCCTATC
CATCTCTCCCTTCTTCTTAGGCCTCCGCCGCCGTGCTATTGCGAAAAACA
GGATTATGAAGCGTGTACTGCTGCTAGAGCAGCAGCAGCGGCAGAAGGAT
TTGAAAGAGGGGATAAAGGAAGGGAAGGAGGAGAAGGAGGAGAAGGAGGA
GAAGGAGAAGAAGGAGGAGGAGGGAGAGTTGGTATTGCGGAGTGACGATA
AGACGATGCCGTCTTTGCATGAGATGAACTTGACGGAGTCTCCCGCCCTC
CTCGCCGCTGCACCTCTGCCACCTATGATGGTGACCACCCCTTCTGCTCC
TCCTCCTGTTATTGCTACTACTGCTTTTGCCCCTGCATCTGGTGCTGCCC
CTCCATATGCTGATACCTCTAAGGACCGGATCAAGGAGGCAGCGGTAGAG
AGAAAGGAGGAAGGGGAGGAGGGGAAGGGAATAGATGTTAACAGTGTGGC
GGTTCCTATCGGGGGCGGCCCAGAAGACGAGCTCCCTATTGACGTTGAGC
ACTCTAACGAGAACGTCGACGATAGCAGCAGCACCAACAGTGGTGGTAGC
AGCAGTAGCAGTATCACCAGCAGCAGTACACAAGAGGGCGGCGTGAACAT
TTCTGCCGCAGGTCCCGGGTCCTCGAGCGGGGAGGGCAGGGGGGAGGATG
GGGGGGAGGGCGAGGGAGAGAAAGGCGCTGCCTTGAGTTCAATGGGGGAA
TGA back to topprotein sequence of NO25G00670.1 >NO25G00670.1-protein ID=NO25G00670.1-protein|Name=NO25G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=701bp
MRPVQSTPPADEGQQQFRSVLLPSLAAEVEEDGLLVAGMEGKTDSVSSSS
SSSGLELLTPAEMDLLAAWQAGGSTRRKKRRIKKKNRLLQENYTHLLRSL
RDEFIFKGFGLTLTKSLLRRDIGLGFGIPLTPNFMAWERIDFLPTINSNI
GVFYPFCVSGWISISYPADLVLRFLAFFLPVLPVSHQSGFVTSSSSSSSS
SSRSSSSSSSSSSSSSSSSSSNSGSGSLSSFSLISSMPSPAPAPAPAPAA
AAAAPAAAAPRYDAPSSDPDLIRQQRDITGTTLPAAAPPPVSAGAPVSAP
QPTGGTKPTSRSRRLKRASVERVGFSLSCRYTPAHGFFVRVTPWLFFLPG
LQIISRLLTQIIHMLTHHWEQLEARYRLHALVDEARRLNEAAEALLTKLN
GTVSSKSSVGSLSSCSTNSRSSSGRIKKHEKTLTARRFKKWASKKHGGIG
YSMSLFRGGLGASVLLSISPFFLGLRRRAIAKNRIMKRVLLLEQQQRQKD
LKEGIKEGKEEKEEKEEKEKKEEEGELVLRSDDKTMPSLHEMNLTESPAL
LAAAPLPPMMVTTPSAPPPVIATTAFAPASGAAPPYADTSKDRIKEAAVE
RKEEGEEGKGIDVNSVAVPIGGGPEDELPIDVEHSNENVDDSSSTNSGGS
SSSSITSSSTQEGGVNISAAGPGSSSGEGRGEDGGEGEGEKGAALSSMGE
* back to topmRNA from alignment at chr25:184476..186578+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00670.1 ID=NO25G00670.1|Name=NO25G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr25:184476..186578+ (Nannochloropsis oceanica)
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTGTGAGTGGGTGGATCAGCATCAGTTACCC
CGCCGACCTAGTGTTGCGGTTCTTGGCCTTCTTCTTGCCCGTGTTGCCGG
TGTCGCATCAGAGCGGTTTTGTCACGAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGAAGTAGTAGTAGTAGCAGTAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGTAGCAGCAATAGCGGCAGCGGCAGCTTATCCTCCTTCTCATTGA
TTTCGTCGATGCCTTCACCAGCACCAGCACCAGCACCAGCACCAGCAGCA
GCAGCAGCAGCACCAGCAGCAGCAGCCCCTCGATACGACGCTCCCTCCTC
CGATCCCGACTTGATTCGCCAGCAACGCGACATAACCGGAACAACATTAC
CAGCAGCAGCACCACCACCAGTATCAGCAGGAGCACCAGTATCAGCACCA
CAACCCACAGGAGGTACAAAACCAACAAGCCGCTCTCGGCGCCTTAAACG
TGCCAGCGTCGAACGCGTTGGATTCAGTCTCTCCTGCCGCTACACTCCTG
CACACGGTTTCTTCGTCCGTGTCACCCCCTGGTTATTCTTCCTCCCCGGC
CTACAGATCATTTCCCGTCTCCTCACTCAGATTATACATATGTTGACACA
TCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACG
AGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAAT
GGTACGGTCAGCAGCAAAAGCAGCGTCGGCAGTTTAAGTAGTTGTAGCAC
CAACAGCAGAAGCAGCAGCGGCAGGATTAAAAAACATGAGAAGACTTTAA
CGGCTCGACGCTTCAAGAAATGGGCCTCAAAAAAACACGGCGGCATCGGG
TACAGCATGTCTCTCTTTCGTGGAGGCTTAGGTGCATCCGTCCTCCTATC
CATCTCTCCCTTCTTCTTAGGCCTCCGCCGCCGTGCTATTGCGAAAAACA
GGATTATGAAGCGTGTACTGCTGCTAGAGCAGCAGCAGCGGCAGAAGGAT
TTGAAAGAGGGGATAAAGGAAGGGAAGGAGGAGAAGGAGGAGAAGGAGGA
GAAGGAGAAGAAGGAGGAGGAGGGAGAGTTGGTATTGCGGAGTGACGATA
AGACGATGCCGTCTTTGCATGAGATGAACTTGACGGAGTCTCCCGCCCTC
CTCGCCGCTGCACCTCTGCCACCTATGATGGTGACCACCCCTTCTGCTCC
TCCTCCTGTTATTGCTACTACTGCTTTTGCCCCTGCATCTGGTGCTGCCC
CTCCATATGCTGATACCTCTAAGGACCGGATCAAGGAGGCAGCGGTAGAG
AGAAAGGAGGAAGGGGAGGAGGGGAAGGGAATAGATGTTAACAGTGTGGC
GGTTCCTATCGGGGGCGGCCCAGAAGACGAGCTCCCTATTGACGTTGAGC
ACTCTAACGAGAACGTCGACGATAGCAGCAGCACCAACAGTGGTGGTAGC
AGCAGTAGCAGTATCACCAGCAGCAGTACACAAGAGGGCGGCGTGAACAT
TTCTGCCGCAGGTCCCGGGTCCTCGAGCGGGGAGGGCAGGGGGGAGGATG
GGGGGGAGGGCGAGGGAGAGAAAGGCGCTGCCTTGAGTTCAATGGGGGAA
TGA back to topCoding sequence (CDS) from alignment at chr25:184476..186578+ >NO25G00670.1 ID=NO25G00670.1|Name=NO25G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=2103bp|location=Sequence derived from alignment at chr25:184476..186578+ (Nannochloropsis oceanica)
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTGTGAGTGGGTGGATCAGCATCAGTTACCC
CGCCGACCTAGTGTTGCGGTTCTTGGCCTTCTTCTTGCCCGTGTTGCCGG
TGTCGCATCAGAGCGGTTTTGTCACGAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGAAGTAGTAGTAGTAGCAGTAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGTAGCAGCAATAGCGGCAGCGGCAGCTTATCCTCCTTCTCATTGA
TTTCGTCGATGCCTTCACCAGCACCAGCACCAGCACCAGCACCAGCAGCA
GCAGCAGCAGCACCAGCAGCAGCAGCCCCTCGATACGACGCTCCCTCCTC
CGATCCCGACTTGATTCGCCAGCAACGCGACATAACCGGAACAACATTAC
CAGCAGCAGCACCACCACCAGTATCAGCAGGAGCACCAGTATCAGCACCA
CAACCCACAGGAGGTACAAAACCAACAAGCCGCTCTCGGCGCCTTAAACG
TGCCAGCGTCGAACGCGTTGGATTCAGTCTCTCCTGCCGCTACACTCCTG
CACACGGTTTCTTCGTCCGTGTCACCCCCTGGTTATTCTTCCTCCCCGGC
CTACAGATCATTTCCCGTCTCCTCACTCAGATTATACATATGTTGACACA
TCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACG
AGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAAT
GGTACGGTCAGCAGCAAAAGCAGCGTCGGCAGTTTAAGTAGTTGTAGCAC
CAACAGCAGAAGCAGCAGCGGCAGGATTAAAAAACATGAGAAGACTTTAA
CGGCTCGACGCTTCAAGAAATGGGCCTCAAAAAAACACGGCGGCATCGGG
TACAGCATGTCTCTCTTTCGTGGAGGCTTAGGTGCATCCGTCCTCCTATC
CATCTCTCCCTTCTTCTTAGGCCTCCGCCGCCGTGCTATTGCGAAAAACA
GGATTATGAAGCGTGTACTGCTGCTAGAGCAGCAGCAGCGGCAGAAGGAT
TTGAAAGAGGGGATAAAGGAAGGGAAGGAGGAGAAGGAGGAGAAGGAGGA
GAAGGAGAAGAAGGAGGAGGAGGGAGAGTTGGTATTGCGGAGTGACGATA
AGACGATGCCGTCTTTGCATGAGATGAACTTGACGGAGTCTCCCGCCCTC
CTCGCCGCTGCACCTCTGCCACCTATGATGGTGACCACCCCTTCTGCTCC
TCCTCCTGTTATTGCTACTACTGCTTTTGCCCCTGCATCTGGTGCTGCCC
CTCCATATGCTGATACCTCTAAGGACCGGATCAAGGAGGCAGCGGTAGAG
AGAAAGGAGGAAGGGGAGGAGGGGAAGGGAATAGATGTTAACAGTGTGGC
GGTTCCTATCGGGGGCGGCCCAGAAGACGAGCTCCCTATTGACGTTGAGC
ACTCTAACGAGAACGTCGACGATAGCAGCAGCACCAACAGTGGTGGTAGC
AGCAGTAGCAGTATCACCAGCAGCAGTACACAAGAGGGCGGCGTGAACAT
TTCTGCCGCAGGTCCCGGGTCCTCGAGCGGGGAGGGCAGGGGGGAGGATG
GGGGGGAGGGCGAGGGAGAGAAAGGCGCTGCCTTGAGTTCAATGGGGGAA
TGA back to top
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