NO25G00670, NO25G00670 (gene) Nannochloropsis oceanica

Overview
NameNO25G00670
Unique NameNO25G00670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2103
Alignment locationchr25:184476..186578 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeroxin/Dysferlin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:184476..186578 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G00670 vs. NCBI_GenBank
Match: EWM21641.1 (Peroxin/Dysferlin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 5.100e-59
Identity = 173/487 (35.52%), Postives = 234/487 (48.05%), Query Frame = 0 
Query:   12 EGQQQFRSVLLPSLAAEVEE-DGLLVAGMEGKTDSVSSSSXXSGLELLTPAEMDLLAAWXXXXXXXXXXXXXXXXXXXLQENYTHLLRSLRDEFIFKGFGLTLTKSLLRRDIGLGFGIPLTPNFMAWERIDFLPTINSNIGVFYPFCVSGWISISYPADLVLRFLAFFLPVLPVSHQSGFVTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDAPSSDPDLIRQQRDITGTTLPAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVERVGFSLSCRYTPAHGFFVRVTPWLFFLPGLQIISRLLTQIIHMLTHHWEQLEARYRLHALVDEARRLNEAAEALLTKLNGTVSSKSSVGSLSSCSTNSRSSSGRIKKHEKTLTARRFKKWASKKHGGIGYSMSLFRGGLGASVLLSISPFFLGLRRRAIAKNRIMKRVLLLEQQQR 498
            +  QQ R +LLP    E E+ DG+L        +  S S   SGL+LL  A++  +                              L  LR+E+ FKGF +TLTKSLL RDIG GFGIPLTPNF+ WERIDFLPTINS +G+F+PFCVSGWIS SYPADLV RFLA FLPVLP+  Q+  V S                                                                     ++ +SD           G+  P+A+                             RASVERVGFS+SCRYT A G   RVTPWLFFLPG Q+++ L+  I+ ++T+ W  ++A +  + L++      E+A  +++    +    S+V S  + + +SR   G           RRFK+W SKKH GIGYSM+ FRGGLGAS+++SISPFFL L    ++ + + +R    +QQ++
Sbjct:  221 DDSQQLRDILLPLSVEEGEQGDGILGEKYASDKNGDSISFTSSGLDLLAIADLPNIEC-----------NRDVKSILSALSTCRGFLNRLREEYQFKGFAVTLTKSLLHRDIGCGFGIPLTPNFLMWERIDFLPTINSCLGMFFPFCVSGWISFSYPADLVYRFLAHFLPVLPLGPQASMVLSSTGKHQSYTKMMTGDQRNCSVDHYGGGTFG---------------------------------------ESSTSDTS--------AGSGPPSAS------------AFAPGMVVTRSRPKLKKRASVERVGFSVSCRYTRAAGPHFRVTPWLFFLPGKQLVAHLIESILWLMTYVWWVIKASHLPYRLLNH----RESAAGIIS----STQQPSTVNSTENDAFSSRKRDG-----------RRFKRWVSKKHAGIGYSMNFFRGGLGASLIMSISPFFLKLPPTRLSHSSLKRRRQERDQQRQ 618
The following BLAST results are available for this feature:
BLAST of NO25G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21641.15.100e-5935.52Peroxin/Dysferlin domain protein [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004365NSK004365Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00670.1NO25G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568636gene_8552Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g71gene8843Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00670.1NO25G00670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00670 ID=NO25G00670|Name=NO25G00670|organism=Nannochloropsis oceanica|type=gene|length=2103bp
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTGTGAGTGGGTGGATCAGCATCAGTTACCC
CGCCGACCTAGTGTTGCGGTTCTTGGCCTTCTTCTTGCCCGTGTTGCCGG
TGTCGCATCAGAGCGGTTTTGTCACGAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGAAGTAGTAGTAGTAGCAGTAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGTAGCAGCAATAGCGGCAGCGGCAGCTTATCCTCCTTCTCATTGA
TTTCGTCGATGCCTTCACCAGCACCAGCACCAGCACCAGCACCAGCAGCA
GCAGCAGCAGCACCAGCAGCAGCAGCCCCTCGATACGACGCTCCCTCCTC
CGATCCCGACTTGATTCGCCAGCAACGCGACATAACCGGAACAACATTAC
CAGCAGCAGCACCACCACCAGTATCAGCAGGAGCACCAGTATCAGCACCA
CAACCCACAGGAGGTACAAAACCAACAAGCCGCTCTCGGCGCCTTAAACG
TGCCAGCGTCGAACGCGTTGGATTCAGTCTCTCCTGCCGCTACACTCCTG
CACACGGTTTCTTCGTCCGTGTCACCCCCTGGTTATTCTTCCTCCCCGGC
CTACAGATCATTTCCCGTCTCCTCACTCAGATTATACATATGTTGACACA
TCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACG
AGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAAT
GGTACGGTCAGCAGCAAAAGCAGCGTCGGCAGTTTAAGTAGTTGTAGCAC
CAACAGCAGAAGCAGCAGCGGCAGGATTAAAAAACATGAGAAGACTTTAA
CGGCTCGACGCTTCAAGAAATGGGCCTCAAAAAAACACGGCGGCATCGGG
TACAGCATGTCTCTCTTTCGTGGAGGCTTAGGTGCATCCGTCCTCCTATC
CATCTCTCCCTTCTTCTTAGGCCTCCGCCGCCGTGCTATTGCGAAAAACA
GGATTATGAAGCGTGTACTGCTGCTAGAGCAGCAGCAGCGGCAGAAGGAT
TTGAAAGAGGGGATAAAGGAAGGGAAGGAGGAGAAGGAGGAGAAGGAGGA
GAAGGAGAAGAAGGAGGAGGAGGGAGAGTTGGTATTGCGGAGTGACGATA
AGACGATGCCGTCTTTGCATGAGATGAACTTGACGGAGTCTCCCGCCCTC
CTCGCCGCTGCACCTCTGCCACCTATGATGGTGACCACCCCTTCTGCTCC
TCCTCCTGTTATTGCTACTACTGCTTTTGCCCCTGCATCTGGTGCTGCCC
CTCCATATGCTGATACCTCTAAGGACCGGATCAAGGAGGCAGCGGTAGAG
AGAAAGGAGGAAGGGGAGGAGGGGAAGGGAATAGATGTTAACAGTGTGGC
GGTTCCTATCGGGGGCGGCCCAGAAGACGAGCTCCCTATTGACGTTGAGC
ACTCTAACGAGAACGTCGACGATAGCAGCAGCACCAACAGTGGTGGTAGC
AGCAGTAGCAGTATCACCAGCAGCAGTACACAAGAGGGCGGCGTGAACAT
TTCTGCCGCAGGTCCCGGGTCCTCGAGCGGGGAGGGCAGGGGGGAGGATG
GGGGGGAGGGCGAGGGAGAGAAAGGCGCTGCCTTGAGTTCAATGGGGGAA
TGA
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protein sequence of NO25G00670.1

>NO25G00670.1-protein ID=NO25G00670.1-protein|Name=NO25G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=701bp
MRPVQSTPPADEGQQQFRSVLLPSLAAEVEEDGLLVAGMEGKTDSVSSSS
SSSGLELLTPAEMDLLAAWQAGGSTRRKKRRIKKKNRLLQENYTHLLRSL
RDEFIFKGFGLTLTKSLLRRDIGLGFGIPLTPNFMAWERIDFLPTINSNI
GVFYPFCVSGWISISYPADLVLRFLAFFLPVLPVSHQSGFVTSSSSSSSS
SSRSSSSSSSSSSSSSSSSSSNSGSGSLSSFSLISSMPSPAPAPAPAPAA
AAAAPAAAAPRYDAPSSDPDLIRQQRDITGTTLPAAAPPPVSAGAPVSAP
QPTGGTKPTSRSRRLKRASVERVGFSLSCRYTPAHGFFVRVTPWLFFLPG
LQIISRLLTQIIHMLTHHWEQLEARYRLHALVDEARRLNEAAEALLTKLN
GTVSSKSSVGSLSSCSTNSRSSSGRIKKHEKTLTARRFKKWASKKHGGIG
YSMSLFRGGLGASVLLSISPFFLGLRRRAIAKNRIMKRVLLLEQQQRQKD
LKEGIKEGKEEKEEKEEKEKKEEEGELVLRSDDKTMPSLHEMNLTESPAL
LAAAPLPPMMVTTPSAPPPVIATTAFAPASGAAPPYADTSKDRIKEAAVE
RKEEGEEGKGIDVNSVAVPIGGGPEDELPIDVEHSNENVDDSSSTNSGGS
SSSSITSSSTQEGGVNISAAGPGSSSGEGRGEDGGEGEGEKGAALSSMGE
*
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Synonyms
Publications