NO25G00630.1, NO25G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00630.1
Unique NameNO25G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1485
Alignment locationchr25:175626..177110 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:175626..177110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00630.1 vs.
Match: EWM21570.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 399.1 bits (1024), Expect = 2.100e-107
Identity = 268/507 (52.86%), Postives = 323/507 (63.71%), Query Frame = 0 
Query:    1 MRIISRERFGGAAFDTDPATM--AKRLHKHGEAAAQGHCPPSQHAAAPCGVGVLEGSWGNTEYQDRQWDLENNISSAARCDCGQHTFCMLPHQQDGSMDTAPNTPDFNSSTSMTSHSQHSREKR--GRVASGETPTNSSRRHLVLLPETGLSSSSLASVAAAEGGDPADIENLSASMVQAMTRKGGSTDGAVSG----SNSNNIASSGVPSIPASFSRASFGLSSSLEQPQDHHLPGSNHPHPHPQQQPYLPQQQRRRGSVSGADGSSRSIDRGSSLV-DGGAEESEALSLDRILVERNGDMVVVESSVVCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGRTTRKESMQKQQQSSPEGGVCMPIIAKPRSTTTNDNSSHNDTSSSQHVYYSLCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKACAAEGRC----GGRGRGSGGGREDGSLVGSSCSIM 495
            MR+IS++RF  +A+DT   +M   K+  +  E ++    P   ++ APCGVG L    G    ++ +     NI  AARCDCGQHTF +L     G  DTAP TPD +S    TSHS+ S  +   G V  G+  T+  RRH        LSSS        +  DPADIE LSA+MVQAM  KG ST+G V+G    S+ +++ SS  P + A   R S   +S+  +PQDH+         H  QQ    Q QRRR SVSGADG       GSS V DG  E+  ALSLDRI+VE NGDMVV++ SVVCDACPSCDDVCTLQDCRGCQ+KRERLLA G+MVV EAWGRTTRK  +Q   ++S  GG C+PI+AKP  +   D          Q+V YSLCEIRRHRTLASCWLVAKGQVYDVT YLSSHPAGAIA+ARKAGGQDC+EDFEFHS KAQK+WK L+IGSV+ C  + +     GG  R S  G + GSLVGSSCSIM
Sbjct:    1 MRVISQKRFN-SAYDTSCTSMHLGKQEPEESEPSSHYFGPGRANSCAPCGVGTLSDVNGLRIEKNIEEQGSGNI--AARCDCGQHTFLVLASDSGG--DTAPTTPD-SSGAIRTSHSETSITESLGGNVVEGKL-TDGRRRHWENQSGADLSSSLPTHSRLIKEDDPADIEILSATMVQAMVCKG-STEGRVNGNRRQSHRHSLDSSEGP-VKALSPRPSVCPASA--RPQDHY-------RSHQPQQ----QHQRRRLSVSGADGGDLGTSIGSSTVLDGSMEDPSALSLDRIVVEGNGDMVVIQPSVVCDACPSCDDVCTLQDCRGCQKKRERLLASGIMVVQEAWGRTTRKRPLQ---ENSLSGGACVPIMAKPHGSAKGDGC--------QNVSYSLCEIRRHRTLASCWLVAKGQVYDVTNYLSSHPAGAIAMARKAGGQDCTEDFEFHSAKAQKLWKNLKIGSVRPCPGDRQSRRSRGGDDRSSRSGSDLGSLVGSSCSIM 474
The following BLAST results are available for this feature:
BLAST of NO25G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21570.12.100e-10752.86cytochrome b5 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00630NO25G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00630.1NO25G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00630.1.cds1NO25G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00630.1 ID=NO25G00630.1|Name=NO25G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp
ATGCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGGA
CCCTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCGC
AGGGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGGG
GTGTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGGA
CCTGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCATA
CCTTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCCC
AACACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAACA
TTCTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCCTACAAATA
GCAGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGGTTGTCCTCCTCC
TCCTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTGA
AAATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGCA
CCGATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGGC
GTGCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCTC
ATCCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCCC
ATCCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCGT
GGCTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCAG
TTCCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGATA
GAATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGTG
GTATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACTG
CCGCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATGG
TTGTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAAA
CAGCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCAA
GCCCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCCT
CCTCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCACG
CTTGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCCC
CTACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCGG
GCGGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCAA
AAGATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGGA
AGGACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGATG
GGTCGTTAGTTGGATCATCGTGCAGTATCATGTGA
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protein sequence of NO25G00630.1

>NO25G00630.1-protein ID=NO25G00630.1-protein|Name=NO25G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MRIISRERFGGAAFDTDPATMAKRLHKHGEAAAQGHCPPSQHAAAPCGVG
VLEGSWGNTEYQDRQWDLENNISSAARCDCGQHTFCMLPHQQDGSMDTAP
NTPDFNSSTSMTSHSQHSREKRGRVASGETPTNSSRRHLVLLPETGLSSS
SLASVAAAEGGDPADIENLSASMVQAMTRKGGSTDGAVSGSNSNNIASSG
VPSIPASFSRASFGLSSSLEQPQDHHLPGSNHPHPHPQQQPYLPQQQRRR
GSVSGADGSSRSIDRGSSLVDGGAEESEALSLDRILVERNGDMVVVESSV
VCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGRTTRKESMQK
QQQSSPEGGVCMPIIAKPRSTTTNDNSSHNDTSSSQHVYYSLCEIRRHRT
LASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQ
KMWKKLRIGSVKACAAEGRCGGRGRGSGGGREDGSLVGSSCSIM*
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mRNA from alignment at chr25:175626..177110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00630.1 ID=NO25G00630.1|Name=NO25G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp|location=Sequence derived from alignment at chr25:175626..177110- (Nannochloropsis oceanica)
ATGCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGGA
CCCTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCGC
AGGGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGGG
GTGTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGGA
CCTGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCATA
CCTTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCCC
AACACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAACA
TTCTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCCTACAAATA
GCAGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGGTTGTCCTCCTCC
TCCTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTGA
AAATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGCA
CCGATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGGC
GTGCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCTC
ATCCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCCC
ATCCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCGT
GGCTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCAG
TTCCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGATA
GAATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGTG
GTATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACTG
CCGCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATGG
TTGTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAAA
CAGCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCAA
GCCCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCCT
CCTCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCACG
CTTGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCCC
CTACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCGG
GCGGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCAA
AAGATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGGA
AGGACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGATG
GGTCGTTAGTTGGATCATCGTGCAGTATCATGTGA
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Coding sequence (CDS) from alignment at chr25:175626..177110-

>NO25G00630.1 ID=NO25G00630.1|Name=NO25G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr25:175626..177110- (Nannochloropsis oceanica)
ATGCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGGA
CCCTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCGC
AGGGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGGG
GTGTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGGA
CCTGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCATA
CCTTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCCC
AACACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAACA
TTCTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCCTACAAATA
GCAGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGGTTGTCCTCCTCC
TCCTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTGA
AAATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGCA
CCGATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGGC
GTGCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCTC
ATCCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCCC
ATCCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCGT
GGCTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCAG
TTCCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGATA
GAATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGTG
GTATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACTG
CCGCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATGG
TTGTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAAA
CAGCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCAA
GCCCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCCT
CCTCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCACG
CTTGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCCC
CTACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCGG
GCGGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCAA
AAGATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGGA
AGGACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGATG
GGTCGTTAGTTGGATCATCGTGCAGTATCATGTGA
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Synonyms
Publications