NO25G00630, NO25G00630 (gene) Nannochloropsis oceanica

Overview
NameNO25G00630
Unique NameNO25G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1485
Alignment locationchr25:175626..177110 -

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Properties
Property NameValue
DescriptionCytochrome b5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:175626..177110 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036400Cyt_B5-like_heme/steroid_sf
IPR001199Cyt_B5-like_heme/steroid-bd
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0020037heme binding
GO:0016491oxidoreductase activity
Homology
BLAST of NO25G00630 vs. NCBI_GenBank
Match: EWM21570.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 345.9 bits (886), Expect = 2.100e-91
Identity = 248/509 (48.72%), Postives = 293/509 (57.56%), Query Frame = 0
Query:    1 MRIISRERFGGAAFDTDPATM--AKRLHKHGEAAAQGHCPPSQHAAAPCGVGVLEGSWGNTEYQDRQWDLENNISSAARCDCGQHTFCMLPHQQDGSMDTAPNTPDFNSS-XXXXXXXXXXXXXRGRVASGETPTNSSRRHLVLLPETGLSSSSLASVAAAEGGDPADIENLSASMVQAMTRKGGSTDGAVSG----SNSNNIASSGVPSIPASFSRASFGLSSSLEQPQDH---HLPGSNHXXXXXXXXXXLPXXXRRRGSVSGADGSSRSIDRGSSLV-DGGAEESEALSLDRILVERNGDMVVVESSVVCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYYSLCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKACAAEGR----XXXXXXXXXXXXXXGSLVGSSCSIM 495
            MR+IS++RF  +A+DT   +M   K+  +  E ++    P   ++ APCGVG L    G    ++ +     NI  AARCDCGQHTF +L     G  DTAP TPD + +               G V  G+  T+  RRH        LSSS        +  DPADIE LSA+MVQAM  K GST+G V+G    S+ +++ SS  P + A   R S   +S+  +PQDH   H P   H               RRR SVSGADG       GSS V DG  E+  ALSLDRI+VE NGDMVV++ SVVCDACPSCDDVCTLQDCRGCQ+KRERLLA G+MVV EAWGRT                                             V YSLCEIRRHRTLASCWLVAKGQVYDVT YLSSHPAGAIA+ARKAGGQDC+EDFEFHS KAQK+WK L+IGSV+ C  + +          XXXXXXXXGSLVGSSCSIM
Sbjct:    1 MRVISQKRF-NSAYDTSCTSMHLGKQEPEESEPSSHYFGPGRANSCAPCGVGTLSDVNGLRIEKNIEEQGSGNI--AARCDCGQHTFLVLASDSGG--DTAPTTPDSSGAIRTSHSETSITESLGGNVVEGKL-TDGRRRHWENQSGADLSSSLPTHSRLIKEDDPADIEILSATMVQAMVCK-GSTEGRVNGNRRQSHRHSLDSSEGP-VKALSPRPSVCPASA--RPQDHYRSHQPQQQH--------------QRRRLSVSGADGGDLGTSIGSSTVLDGSMEDPSALSLDRIVVEGNGDMVVIQPSVVCDACPSCDDVCTLQDCRGCQKKRERLLASGIMVVQEAWGRT-----------TRKRPLQENSLSGGACVPIMAKPHGSAKGDGCQNVSYSLCEIRRHRTLASCWLVAKGQVYDVTNYLSSHPAGAIAMARKAGGQDCTEDFEFHSAKAQKLWKNLKIGSVRPCPGDRQSRRSRGGDDRXXXXXXXXGSLVGSSCSIM 474          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: CBJ49007.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 2.300e-21
Identity = 84/176 (47.73%), Postives = 106/176 (60.23%), Query Frame = 0
Query:  290 NGDMVVVESSVVCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGR-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYYSLCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKAC 465
            +G    VE S VCDACP C+D C +  C GC E R        M + EA+G+        XXXXXXXXXXXXXXXXXXXXXXX                  Y+LCE+RR +   +CW+V++G VYDVT  L  HP G  ++ + AGG+DC+EDF FHS  A+K W++ RIGS+ AC
Sbjct:  229 SGHSYFVERSTVCDACPYCEDTCEVAWCNGCDETR--------MHLEEAYGKLMLSAAEVXXXXXXXXXXXXXXXXXXXXXXXSRLKLAPVLSRRYPRKSSYTLCEVRRRKVTGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVAC 396          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: XP_008875240.1 (hypothetical protein H310_10590 [Aphanomyces invadans] >ETV95929.1 hypothetical protein H310_10590 [Aphanomyces invadans])

HSP 1 Score: 99.0 bits (245), Expect = 4.400e-17
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKACAAEGRXXXXXXXXXXXXXXGSLVGSSCSIM 495
            LCE++RHR+L+SCWLVA G VYDVT  +  HPAG   I RKAGG DC++D  FHS +AQ+ WK+  +G +  C  +                GS    SC+IM
Sbjct:   99 LCEVKRHRSLSSCWLVANGIVYDVTNVIQQHPAGTKCILRKAGGVDCTQDLRFHSKEAQQCWKQCAVGKLLPCGDD---------------DGSTSQDSCTIM 186          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: XP_009830824.1 (hypothetical protein H257_07099 [Aphanomyces astaci] >ETV79888.1 hypothetical protein H257_07099 [Aphanomyces astaci])

HSP 1 Score: 98.6 bits (244), Expect = 5.800e-17
Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKACAAEGRXXXXXXXXXXXXXXGSLVGSSCSIM 495
            LCE++RHR+L SCWLVA G VYDVT  +  HPAG   I RKAGG DC++D  FHS  AQ+ WK+  IG    C  +                G     SCSIM
Sbjct:  103 LCEVKRHRSLTSCWLVANGIVYDVTNVIQQHPAGTKCILRKAGGVDCTQDLRFHSKDAQRCWKQCAIGKFLPCGDDN--------------GGDAAQGSCSIM 191          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: OQS06692.1 (hypothetical protein THRCLA_01269 [Thraustotheca clavata])

HSP 1 Score: 98.2 bits (243), Expect = 7.500e-17
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKACAAE 468
            LCE++RHR+  SCWLVA G VYDVT  ++ HPAG   I RKAGG+DC++D +FHS  A+  W K +IG ++ C  +
Sbjct:  103 LCEVKRHRSATSCWLVANGIVYDVTDIMNQHPAGTKCILRKAGGEDCTKDMKFHSKAARNCWSKCQIGKLQPCGED 178          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: OQR91315.1 (hypothetical protein ACHHYP_04793 [Achlya hypogyna])

HSP 1 Score: 97.1 bits (240), Expect = 1.700e-16
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKAC 465
            LCE++RHR+ +SCWLVA G VYDVT  ++ HPAG   I RK+GG DC++D +FHS  AQ  W K +IG +  C
Sbjct:  111 LCEVKRHRSASSCWLVANGIVYDVTDVMAQHPAGTKCILRKSGGMDCAQDMKFHSKAAQSCWSKCKIGMLLPC 183          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: XP_008608302.1 (hypothetical protein SDRG_04405 [Saprolegnia diclina VS20] >EQC37975.1 hypothetical protein SDRG_04405 [Saprolegnia diclina VS20])

HSP 1 Score: 96.7 bits (239), Expect = 2.200e-16
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKAC 465
            LCE+++HR+ ASCWLVA G VYDVT  ++ HPAG   I RK+GG DC++D +FHS  AQ  W K +IG ++ C
Sbjct:  114 LCEVKQHRSAASCWLVANGIVYDVTDVMAQHPAGIKCILRKSGGVDCAQDMKFHSKAAQSCWSKCKIGMLQPC 186          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: XP_002179722.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48708.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-15
Identity = 59/177 (33.33%), Postives = 73/177 (41.24%), Query Frame = 0
Query:  296 VESSVVCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYYSLCEIRRHRTLASCWLVAKGQVYDVTPYL--SSHPAGAIAIARKAGG-QDCSEDFEFHSGKAQKMWKKLRIGSVKACAAEGR 470
            V+    CDACP C DVC   +C  C EK   L            GR                                               YY++C++RRH    S WLVA   +YD T Y+   SHP GA +I RKAGG QDC +D +FHS    + WKK  IG ++ C  EGR
Sbjct:   37 VDYKTTCDACPCCRDVCDNPECLSCDEKTRYL------PCPPCQGREQG--------------------------------------------YYTMCQVRRHNNKDSAWLVAGDTIYDATSYMQQDSHPGGAASILRKAGGVQDCLQDLQFHSKAGVRTWKKYEIGKLRPC--EGR 161          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: GAY06191.1 (Hypothetical protein PINS_014001 [Pythium insidiosum])

HSP 1 Score: 93.6 bits (231), Expect = 1.900e-15
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKACAAEGRXXXXXXXXXXXXXXGSLVGSSCSIM 495
            LCE+R+H T  SCWLVA   VYDVT  L+SHPAG  +I RKAGG+DC++D +FHS  A+K+ +K  IG ++ C                   G+ V S+C+IM
Sbjct:  185 LCEVRQHTTADSCWLVANNAVYDVTGVLASHPAGPRSILRKAGGKDCTQDMKFHSKTARKLLEKCFIGKLEPCGETN---------------GADVQSACTIM 272          
BLAST of NO25G00630 vs. NCBI_GenBank
Match: XP_008915051.1 (hypothetical protein PPTG_18905 [Phytophthora parasitica INRA-310] >ETI31721.1 hypothetical protein F443_21350 [Phytophthora parasitica P1569] >ETM99673.1 hypothetical protein PPTG_18905 [Phytophthora parasitica INRA-310] >ETO60432.1 hypothetical protein F444_21373 [Phytophthora parasitica P1976])

HSP 1 Score: 92.0 bits (227), Expect = 5.400e-15
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query:  392 LCEIRRHRTLASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQKMWKKLRIGSVKAC 465
            +CE++ HR+L SCWLV  GQVYDVT  +++HP G  +I RKAGG DC+ D +FH+  A+KM +K  IG ++ C
Sbjct:  226 MCEVKLHRSLESCWLVCSGQVYDVTGLVTAHPGGVRSILRKAGGPDCARDMKFHTKNARKMMEKCFIGKLQQC 298          
The following BLAST results are available for this feature:
BLAST of NO25G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21570.12.100e-9148.72cytochrome b5 [Nannochloropsis gaditana][more]
CBJ49007.12.300e-2147.73conserved unknown protein [Ectocarpus siliculosus][more]
XP_008875240.14.400e-1745.63hypothetical protein H310_10590 [Aphanomyces invad... [more]
XP_009830824.15.800e-1746.60hypothetical protein H257_07099 [Aphanomyces astac... [more]
OQS06692.17.500e-1752.63hypothetical protein THRCLA_01269 [Thraustotheca c... [more]
OQR91315.11.700e-1654.79hypothetical protein ACHHYP_04793 [Achlya hypogyna... [more]
XP_008608302.12.200e-1654.79hypothetical protein SDRG_04405 [Saprolegnia dicli... [more]
XP_002179722.11.400e-1533.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAY06191.11.900e-1545.63Hypothetical protein PINS_014001 [Pythium insidios... [more]
XP_008915051.15.400e-1552.05hypothetical protein PPTG_18905 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004370NSK004370Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00630.1NO25G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603059gene_8548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g75gene8847Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00630.1NO25G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00630 ID=NO25G00630|Name=NO25G00630|organism=Nannochloropsis oceanica|type=gene|length=1485bp
ATGCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGGA
CCCTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCGC
AGGGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGGG
GTGTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGGA
CCTGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCATA
CCTTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCCC
AACACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAACA
TTCTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCCTACAAATA
GCAGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGGTTGTCCTCCTCC
TCCTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTGA
AAATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGCA
CCGATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGGC
GTGCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCTC
ATCCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCCC
ATCCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCGT
GGCTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCAG
TTCCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGATA
GAATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGTG
GTATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACTG
CCGCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATGG
TTGTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAAA
CAGCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCAA
GCCCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCCT
CCTCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCACG
CTTGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCCC
CTACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCGG
GCGGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCAA
AAGATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGGA
AGGACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGATG
GGTCGTTAGTTGGATCATCGTGCAGTATCATGTGA
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protein sequence of NO25G00630.1

>NO25G00630.1-protein ID=NO25G00630.1-protein|Name=NO25G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MRIISRERFGGAAFDTDPATMAKRLHKHGEAAAQGHCPPSQHAAAPCGVG
VLEGSWGNTEYQDRQWDLENNISSAARCDCGQHTFCMLPHQQDGSMDTAP
NTPDFNSSTSMTSHSQHSREKRGRVASGETPTNSSRRHLVLLPETGLSSS
SLASVAAAEGGDPADIENLSASMVQAMTRKGGSTDGAVSGSNSNNIASSG
VPSIPASFSRASFGLSSSLEQPQDHHLPGSNHPHPHPQQQPYLPQQQRRR
GSVSGADGSSRSIDRGSSLVDGGAEESEALSLDRILVERNGDMVVVESSV
VCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGRTTRKESMQK
QQQSSPEGGVCMPIIAKPRSTTTNDNSSHNDTSSSQHVYYSLCEIRRHRT
LASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQ
KMWKKLRIGSVKACAAEGRCGGRGRGSGGGREDGSLVGSSCSIM*
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Synonyms
Publications