NO25G00360.1, NO25G00360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00360.1
Unique NameNO25G00360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length691
Alignment locationchr25:108731..109794 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:108731..109794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00360.1 vs.
Match: EWM21554.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 147.5 bits (371), Expect = 4.000e-32
Identity = 91/174 (52.30%), Postives = 110/174 (63.22%), Query Frame = 0 
Query:    3 TTAKAAHPLQPLHDTALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHRTSPMTGLVLPSRKLWPNLALKHLACALHPRSVAEEEEEKAMEKARRENAHRKQRRREQRDAVASGLANSTLTSGTSSEDEDVDDEEEDD-SSSDSDSDEEADEAGGALRVMSVMPARYR 176
            TT+     +  + +   + LLCPISRCIMRDPVLTCDG+SYER SIEAW  RGHRTSPMTGLVLPSR LW NL LK+L+ AL P S  EEE  KA  ++  + A               G+       GTSSE+E+ ++EEE+D   S SDS EE  EA G LRV+S +PAR R
Sbjct:   10 TTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQA---------------GVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSR 168
The following BLAST results are available for this feature:
BLAST of NO25G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21554.14.000e-3252.30wd sam and u-box domain-containing protein 1 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00360NO25G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00360.1NO25G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00360.1.cds1NO25G00360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00360.1.cds2NO25G00360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00360.1 ID=NO25G00360.1|Name=NO25G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=691bp
CAGATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTACACGA
CACGGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGAG
ACCCCGTTCTGACATGTGACGGGCACAGCTACGAGCGTGCCTCAATCGAG
GCCTGGCTGAGACGGGGCCATCGCACTTCACCGATGACGGGTCTAGTGCT
ACCCTCCCGGAAGCTCTGGCCCAACCTGGCCCTCAAGCACTTGGCCTGCG
CCCTGCATCCACGCAGCGTCGCCGAGGAGGAGGAGGAGAAGGCTATGGAG
AAGGCGCGCCGGGAAAACGCGCATCGAAAACAAAGGCGTCGAGAGCAGCG
GGATGCGGTGGCTTCAGGGCTCGCAAATTCGACCCTGACTTCGGGCACCA
GCAGCGAAGATGAAGATGTGGATGATGAGGAGGAGGACGACAGTAGCAGT
GACTCCGATTCGGACGAGGAGGCGGATGAGGCGGGGGGGGCACTTCGAGT
CATGAGCGTTATGCCTGCCCGATACCGCCCAAGTCGATCAACATGATGGC
CTGCAGTCAACCTGGTCTTAGCCGGCGGCGTCTAAGGGAGGGAAGTACTG
GAGGGGCCTGTGTGGTAGGGGTTGAGAAATGCAGTCTTCGACATTCAGGC
ACAAAGTATATCAAATGCAACAAGTAGAAAATTCGTGATCG
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protein sequence of NO25G00360.1

>NO25G00360.1-protein ID=NO25G00360.1-protein|Name=NO25G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MDTTAKAAHPLQPLHDTALEPLLCPISRCIMRDPVLTCDGHSYERASIEA
WLRRGHRTSPMTGLVLPSRKLWPNLALKHLACALHPRSVAEEEEEKAMEK
ARRENAHRKQRRREQRDAVASGLANSTLTSGTSSEDEDVDDEEEDDSSSD
SDSDEEADEAGGALRVMSVMPARYRPSRST*
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mRNA from alignment at chr25:108731..109794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00360.1 ID=NO25G00360.1|Name=NO25G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp|location=Sequence derived from alignment at chr25:108731..109794+ (Nannochloropsis oceanica)
CAGATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTACACGA
CACGGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGGT
AATTGCCACGATTGACACGTCCATTTTCCTCCCCCCAAGCAAAGACTATT
GTACAACGGGTGAAATGGAGAAATAATAGAGACGGGGACTTCTTCAGGTT
TTATCGCTGGTCAGCTGCGTTGGAGGTGGACAAGAAAGAGACCGAACACT
CCCTAGCAGACTTGCGTCCCCTCATCCTCCAACACACGCTGCTTCGGTCC
CTCATGCGCTGCCTCCTCGAGAGGGCGACCTACTATCTCTTTTCCATGCT
GTACATCAGATCTACCCATTGTATTTTTTCCATAGTATCTCTTTATTCCA
GAGTCTCACAACTTCCCTTTTTCCTCAAAATTTCTATTCTTCTTCCCCCT
CATCTCTCGCTCATCCACAAGAGACCCCGTTCTGACATGTGACGGGCACA
GCTACGAGCGTGCCTCAATCGAGGCCTGGCTGAGACGGGGCCATCGCACT
TCACCGATGACGGGTCTAGTGCTACCCTCCCGGAAGCTCTGGCCCAACCT
GGCCCTCAAGCACTTGGCCTGCGCCCTGCATCCACGCAGCGTCGCCGAGG
AGGAGGAGGAGAAGGCTATGGAGAAGGCGCGCCGGGAAAACGCGCATCGA
AAACAAAGGCGTCGAGAGCAGCGGGATGCGGTGGCTTCAGGGCTCGCAAA
TTCGACCCTGACTTCGGGCACCAGCAGCGAAGATGAAGATGTGGATGATG
AGGAGGAGGACGACAGTAGCAGTGACTCCGATTCGGACGAGGAGGCGGAT
GAGGCGGGGGGGGCACTTCGAGTCATGAGCGTTATGCCTGCCCGATACCG
CCCAAGTCGATCAACATGATGGCCTGCAGTCAACCTGGTCTTAGCCGGCG
GCGTCTAAGGGAGGGAAGTACTGGAGGGGCCTGTGTGGTAGGGGTTGAGA
AATGCAGTCTTCGACATTCAGGCACAAAGTATATCAAATGCAACAAGTAG
AAAATTCGTGATCG
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Coding sequence (CDS) from alignment at chr25:108731..109794+

>NO25G00360.1 ID=NO25G00360.1|Name=NO25G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr25:108731..109794+ (Nannochloropsis oceanica)
ATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTACACGACAC
GGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGAGACC
CCGTTCTGACATGTGACGGGCACAGCTACGAGCGTGCCTCAATCGAGGCC
TGGCTGAGACGGGGCCATCGCACTTCACCGATGACGGGTCTAGTGCTACC
CTCCCGGAAGCTCTGGCCCAACCTGGCCCTCAAGCACTTGGCCTGCGCCC
TGCATCCACGCAGCGTCGCCGAGGAGGAGGAGGAGAAGGCTATGGAGAAG
GCGCGCCGGGAAAACGCGCATCGAAAACAAAGGCGTCGAGAGCAGCGGGA
TGCGGTGGCTTCAGGGCTCGCAAATTCGACCCTGACTTCGGGCACCAGCA
GCGAAGATGAAGATGTGGATGATGAGGAGGAGGACGACAGTAGCAGTGAC
TCCGATTCGGACGAGGAGGCGGATGAGGCGGGGGGGGCACTTCGAGTCAT
GAGCGTTATGCCTGCCCGATACCGCCCAAGTCGATCAACATGA
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Synonyms
Publications