NO25G00360, NO25G00360 (gene) Nannochloropsis oceanica

Overview
NameNO25G00360
Unique NameNO25G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1064
Alignment locationchr25:108731..109794 +

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Properties
Property NameValue
DescriptionWd sam and u-box domain-containing protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:108731..109794 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
Homology
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: EWM21554.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 7.200e-26
Identity = 60/91 (65.93%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:    3 TTAKAAHPLQPLHDTALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHRTSPMTGLVLPSRKLWPNLALKHLACALHPRSVAEEE 94
            TT+     +  + +   + LLCPISRCIMRDPVLTCDG+SYER SIEAW  RGHRTSPMTGLVLPSR LW NL LK+L+ AL P S  EEE
Sbjct:   10 TTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEE 100
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BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_002589773.1 (hypothetical protein BRAFLDRAFT_90446 [Branchiostoma floridae] >EEN45784.1 hypothetical protein BRAFLDRAFT_90446 [Branchiostoma floridae])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 0 
Query:    3 TTAKAAHPLQPLHDTALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHRTSPMTGLVLPSRKLWPNLALKHL 81
            T +K A P     D   +  LCPISR IM DPV+  DG++YER SIE+WL++G  TSPMT  +LP+  L PN  LK L
Sbjct:  488 TASKGATPQASSDDKVPDEYLCPISREIMVDPVIASDGYTYERKSIESWLQKGKMTSPMTNALLPNMNLTPNRMLKML 565
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BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_005824039.1 (hypothetical protein GUITHDRAFT_78485, partial [Guillardia theta CCMP2712] >EKX37059.1 hypothetical protein GUITHDRAFT_78485, partial [Guillardia theta CCMP2712])

HSP 1 Score: 80.1 bits (196), Expect = 7.800e-12
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   18 ALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHRTSPMTGLVLPSRKLWPNLALKH 80
            AL    CPIS  +M DPV TCDGH+YER+ IE WL++ HRTSP+TG  LP R L PNLAL++
Sbjct:    7 ALPSFFCPISMQLMTDPVNTCDGHTYERSFIETWLQQ-HRTSPLTGSRLPRRDLVPNLALRN 67
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_008618249.1 (hypothetical protein SDRG_13926 [Saprolegnia diclina VS20] >EQC28379.1 hypothetical protein SDRG_13926 [Saprolegnia diclina VS20])

HSP 1 Score: 80.1 bits (196), Expect = 7.800e-12
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:   10 PLQPLHDTALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWL-RRGHRTSPMTGLVLPSRKLWPNLALKHLACALH 86
            PL  LHD     ++CPI+R +M DPV+  DGHSYER++IEAWL  R   TSP+T   LPS +L PN ALK  A A H
Sbjct:    4 PLAALHDA----VMCPITRQVMLDPVVAMDGHSYERSAIEAWLTARAVPTSPLTNEPLPSTQLLPNTALKKAAAAYH 76
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_005818176.1 (hypothetical protein GUITHDRAFT_83354, partial [Guillardia theta CCMP2712] >EKX31196.1 hypothetical protein GUITHDRAFT_83354, partial [Guillardia theta CCMP2712])

HSP 1 Score: 79.7 bits (195), Expect = 1.000e-11
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   18 ALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHRTSPMTGLVLPSRKLWPNLALKH 80
            AL    CPIS  +M DPV TCDGH+YER+ IE WL++ HRTSP+TG  LP R L PNLAL++
Sbjct:    7 ALPSFFCPISMELMSDPVNTCDGHTYERSFIETWLQQ-HRTSPLTGSRLPRRDLVPNLALRN 67
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_005818210.1 (hypothetical protein GUITHDRAFT_83324, partial [Guillardia theta CCMP2712] >XP_005819210.1 hypothetical protein GUITHDRAFT_82476, partial [Guillardia theta CCMP2712] >EKX31230.1 hypothetical protein GUITHDRAFT_83324, partial [Guillardia theta CCMP2712] >EKX32230.1 hypothetical protein GUITHDRAFT_82476, partial [Guillardia theta CCMP2712])

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-11
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   18 ALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHR-TSPMTGLVLPSRKLWPNLALK 79
            AL   +CPIS  +M DPV  CDGH+YER+SIE WLR  HR +SP+TG +LPS  L PNLAL+
Sbjct:    7 ALPSFICPISMALMTDPVTCCDGHTYERSSIETWLR--HRLSSPLTGALLPSNHLVPNLALR 66
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_014783061.1 (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Octopus bimaculoides] >KOF98276.1 hypothetical protein OCBIM_22026552mg [Octopus bimaculoides])

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-11
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 0 
Query:   20 EPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHRTSPMTGLVLPSRKLWPNLALKHL 81
            +  LCPI+R IMRDPV+  DG++YER +IE+W++ G   SPMT ++LPS++L PNL +K L
Sbjct:  441 DEFLCPITREIMRDPVIASDGYTYERTAIESWIKSGSTRSPMTNIILPSQQLIPNLTVKML 501
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_002773755.1 (hypothetical protein Pmar_PMAR011602 [Perkinsus marinus ATCC 50983] >EER05571.1 hypothetical protein Pmar_PMAR011602 [Perkinsus marinus ATCC 50983])

HSP 1 Score: 78.6 bits (192), Expect = 2.300e-11
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0 
Query:   16 DTALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRG-----HRTSPMTGLVLPSRKLWPNLALKHL 81
            D  L+ +LCPIS+ IMRDPV T DGHSYER++IEAW R         +SPMTG  LP+  L PN+ LK +
Sbjct:   11 DLLLDGMLCPISQLIMRDPVCTVDGHSYERSAIEAWFRNQEVAGLRHSSPMTGETLPTSTLIPNITLKRV 80
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_005818530.1 (hypothetical protein GUITHDRAFT_83039, partial [Guillardia theta CCMP2712] >XP_005819771.1 hypothetical protein GUITHDRAFT_81995, partial [Guillardia theta CCMP2712] >EKX31550.1 hypothetical protein GUITHDRAFT_83039, partial [Guillardia theta CCMP2712] >EKX32791.1 hypothetical protein GUITHDRAFT_81995, partial [Guillardia theta CCMP2712])

HSP 1 Score: 78.6 bits (192), Expect = 2.300e-11
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   18 ALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHR-TSPMTGLVLPSRKLWPNLALK 79
            AL   +CPIS  +M DPV  CDGH+YER+SIE WLR  HR +SP+TG +LPS  L PNLAL+
Sbjct:    7 ALRSFICPISMALMTDPVTCCDGHTYERSSIETWLR--HRLSSPLTGALLPSDHLVPNLALR 66
[Close]
BLAST of NO25G00360 vs. NCBI_GenBank
Match: XP_005822645.1 (hypothetical protein GUITHDRAFT_79533 [Guillardia theta CCMP2712] >EKX35665.1 hypothetical protein GUITHDRAFT_79533 [Guillardia theta CCMP2712])

HSP 1 Score: 78.6 bits (192), Expect = 2.300e-11
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   18 ALEPLLCPISRCIMRDPVLTCDGHSYERASIEAWLRRGHR-TSPMTGLVLPSRKLWPNLALK 79
            AL   +CPIS  +M DPV  CDGH+YER+SIE WLR  HR +SP+TG +LPS  L PNLAL+
Sbjct:    7 ALRSFICPISMALMTDPVTCCDGHTYERSSIETWLR--HRLSSPLTGALLPSDHLVPNLALR 66
The following BLAST results are available for this feature:
BLAST of NO25G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21554.17.200e-2665.93wd sam and u-box domain-containing protein 1 [Nann... [more]
XP_002589773.12.700e-1251.28hypothetical protein BRAFLDRAFT_90446 [Branchiosto... [more]
XP_005824039.17.800e-1261.29hypothetical protein GUITHDRAFT_78485, partial [Gu... [more]
XP_008618249.17.800e-1254.55hypothetical protein SDRG_13926 [Saprolegnia dicli... [more]
XP_005818176.11.000e-1161.29hypothetical protein GUITHDRAFT_83354, partial [Gu... [more]
XP_005818210.11.700e-1161.29hypothetical protein GUITHDRAFT_83324, partial [Gu... [more]
XP_014783061.11.700e-1154.10PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
XP_002773755.12.300e-1154.29hypothetical protein Pmar_PMAR011602 [Perkinsus ma... [more]
XP_005818530.12.300e-1161.29hypothetical protein GUITHDRAFT_83039, partial [Gu... [more]
XP_005822645.12.300e-1161.29hypothetical protein GUITHDRAFT_79533 [Guillardia ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00360.1NO25G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602941gene_8518Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100564g2gene8874Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00360.1NO25G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00360 ID=NO25G00360|Name=NO25G00360|organism=Nannochloropsis oceanica|type=gene|length=1064bp
CAGATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTACACGA
CACGGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGgt
aattgccacgattgacacgtccattttcctccccccaagcaaagactatt
gtacaacgggtgaaatggagaaataatagagacggggacttcttcaggtt
ttatcgctggtcagctgcgttggaggtggacaagaaagagaccgaacact
ccctagcagacttgcgtcccctcatcctccaacacacgctgcttcggtcc
ctcatgcgctgcctcctcgagagggcgacctactatctcttttccatgct
gtacatcagatctacccattgtattttttccatagtatctctttattcca
gagtctcacaacttccctttttcctcaaaatttctattcttcttccccct
catctctcgctcatccacaagAGACCCCGTTCTGACATGTGACGGGCACA
GCTACGAGCGTGCCTCAATCGAGGCCTGGCTGAGACGGGGCCATCGCACT
TCACCGATGACGGGTCTAGTGCTACCCTCCCGGAAGCTCTGGCCCAACCT
GGCCCTCAAGCACTTGGCCTGCGCCCTGCATCCACGCAGCGTCGCCGAGG
AGGAGGAGGAGAAGGCTATGGAGAAGGCGCGCCGGGAAAACGCGCATCGA
AAACAAAGGCGTCGAGAGCAGCGGGATGCGGTGGCTTCAGGGCTCGCAAA
TTCGACCCTGACTTCGGGCACCAGCAGCGAAGATGAAGATGTGGATGATG
AGGAGGAGGACGACAGTAGCAGTGACTCCGATTCGGACGAGGAGGCGGAT
GAGGCGGGGGGGGCACTTCGAGTCATGAGCGTTATGCCTGCCCGATACCG
CCCAAGTCGATCAACATGATGGCCTGCAGTCAACCTGGTCTTAGCCGGCG
GCGTCTAAGGGAGGGAAGTACTGGAGGGGCCTGTGTGGTAGGGGTTGAGA
AATGCAGTCTTCGACATTCAGGCACAAAGTATATCAAATGCAACAAGTAG
AAAATTCGTGATCG
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protein sequence of NO25G00360.1

>NO25G00360.1-protein ID=NO25G00360.1-protein|Name=NO25G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MDTTAKAAHPLQPLHDTALEPLLCPISRCIMRDPVLTCDGHSYERASIEA
WLRRGHRTSPMTGLVLPSRKLWPNLALKHLACALHPRSVAEEEEEKAMEK
ARRENAHRKQRRREQRDAVASGLANSTLTSGTSSEDEDVDDEEEDDSSSD
SDSDEEADEAGGALRVMSVMPARYRPSRST*
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Synonyms
Publications