|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr25 | genome | chr25:88089..91653 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00290.2 vs.
Match: XP_024159458.1 (non-canonical poly(A) RNA polymerase PAPD5 [Rosa chinensis]; PRQ31304.1 putative polynucleotide adenylyltransferase [Rosa chinensis]) HSP 1 Score: 231.9 bits (590), Expect = 4.200e-57 Identity = 139/338 (41.12%), Postives = 197/338 (58.28%), Query Frame = 0
Query: 110 PLLRLHNELLDFCDLLAPTKAELEARQRVTKIASNTVKALWPDFDVQVFGSEATKVFLPESDIDMVVLPPQELPVHQVRNNLFQLAEAFKQEESVTGMEVIAKARVPIIKL--RFLNLQVDISFSSDSGLKSARYMLERMEALPPLRPLILVFKYFLAQRELNETFTGGCGSFLLQLMLIAYLQHAQKEAEEASGSERTLNLGSLFLGVLRFYGHQLNYEEVGLSVLGDGILFRKLERGMFSYDRPWVLAVENPLDSTLDVGKNSYNMPLLKEALAEAYTRLHNVLVSPPAGKPISLLAVVIRPDQVLSGRP-MPKRHIFQTRVFTPRKPYRPQVERE 445
P+L+LH E+LDFC+ L+PT E EAR+ + S +K +WP V+VFGS T ++LP SDID+V++ +P Q L+ L+ A Q ++VIAKARVPIIK + + DISF DSG K+A ++ + + PPLRPL L+ K FL QRELNE ++GG GS+ L MLIA LQ ++ +AS + NLG L + FYG +LN +VG+S G G F K +G + RP+++A+E+P DVGKNS+N +K A A AYT L N G S+L +IRPD L+ R P + + + +P RP+ E++
Sbjct: 107 PMLQLHKEILDFCEFLSPTPQEEEARRTAVERVSEVIKYIWPRCGVEVFGSFKTGLYLPASDIDVVIM-RSGIPTPQ--QGLYALSRALSQMGLAKRIQVIAKARVPIIKFEEKTSGIAFDISFDIDSGPKAAEFIKDAISKWPPLRPLCLILKIFLQQRELNEVYSGGLGSYALLAMLIAMLQSLRE--SQASPEQ---NLGVLLVNFFDFYGRKLNTSDVGVSCKGTGTFFSKNSKGFTNKGRPFLIAIEDPQAPENDVGKNSFNYFQIKSAFAMAYTTLTNPKNIMSLGPNRSILGTIIRPDATLAERKGGPGQVTLDSLLPGAGEPLRPESEQQ 436
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00290.2 ID=NO25G00290.2|Name=NO25G00290.2|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
AGCCCTTCCTCCCCAACCACACTACCCACGCATTGACCAACAGGCAATAT
ATTTTTTATTCGCTGACCGCTGTAGAAGTAGGAGTAGCACCCGTTCCTGC
GGCATCAAGCCAATATGACGGAGACCAAGGCCAACAAACAAGACAAGAAA
GAGGCGGGTGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGC
CTTCATCCAGTTTCACGACTCGGACGACGACGACGATGGCGTCGCCGCCG
GTGCACAAGTAGGGGTTGATGAGGAGGACGGGGAGGGAGGAGACAAGGTA
GAAGAGGACGGGGGGTTGCTGCGACCATATACAGATGTGCCGTGGCATCG
GAAGGGTGGCCTGGTCACTGTCACCACAGGAGGCGGTGCAGGACAGAAAC
CCATCACCAGCACCATCAAGACGGACCCGACCTCCCTCCCTCCCCTCCTG
CGGCTGCACAATGAGCTCTTGGATTTTTGCGATTTGCTGGCACCGACCAA
GGCGGAGCTAGAGGCCCGGCAGAGGGTCACCAAGATTGCCTCCAACACGG
TGAAGGCGTTGTGGCCGGACTTCGACGTGCAGGTGTTCGGGTCCGAAGCC
ACCAAGGTCTTCCTGCCCGAGAGCGACATCGACATGGTGGTGCTGCCACC
CCAGGAGCTGCCCGTGCACCAGGTCCGCAACAACCTCTTCCAGCTCGCCG
AGGCCTTCAAGCAGGAGGAGTCGGTGACGGGCATGGAGGTGATCGCCAAG
GCCCGCGTGCCCATCATCAAGCTCCGCTTCCTCAACCTGCAGGTGGACAT
CTCCTTCTCCTCCGACTCCGGGCTCAAGTCCGCGCGCTACATGCTCGAGC
GCATGGAGGCCCTGCCCCCCCTCCGGCCCCTCATCCTCGTCTTCAAGTAC
TTCCTGGCCCAGCGGGAGCTGAACGAGACTTTTACGGGCGGCTGCGGCTC
CTTCCTCCTGCAGCTCATGCTCATCGCCTACCTTCAGCACGCGCAGAAGG
AGGCGGAGGAGGCTAGCGGCTCGGAACGCACTCTCAACCTGGGCTCCCTA
TTTTTGGGCGTCCTTCGCTTCTACGGCCACCAGCTCAACTACGAGGAGGT
GGGCCTGTCGGTGCTGGGGGATGGCATCCTCTTCAGGAAGCTGGAGCGCG
GGATGTTCTCGTACGACCGCCCCTGGGTGCTGGCAGTGGAAAACCCGCTG
GACTCGACGCTGGACGTGGGCAAGAACAGCTACAACATGCCCCTTCTCAA
GGAGGCCCTCGCGGAAGCCTACACCCGCCTGCACAACGTTCTGGTCTCTC
CGCCGGCAGGCAAGCCCATCTCTCTCCTCGCCGTGGTCATTCGCCCCGAT
CAAGTGCTGTCCGGGCGGCCCATGCCCAAACGCCATATCTTTCAAACCCG
CGTCTTCACTCCGCGCAAGCCTTATCGACCTCAGGTAGAGAGGGAGGGCG
CGAGGGAGGGAGGGAAGGAGGGAAAGCCTCTGAGGGCTCGTGGAATCGGG
CGCCTTCGACTCCCGTCTCCTCTTTGAATTCCTATGTCCCTGCCTCCCAA
CACAGGTCAGCAGCAATGACAAATACCACAGTAGCGCCAGCGGTAGCTTC
GGCGGCATCGGCGGCATCGGCGGGGGGGGAGGGGCTGGGGGAGGGAGGGA
GGTGCGCATGGTCTCCACCAACGACTATGGAGGAAGAGGAAGGGGAGGAG
GTAGTGGAGGAGGTGGGGGAGAAGAGGGAGGGAAAAAGCGCGGTAGATGG
TCGGGGGGGCGGAGAGAGGATCAGCCGGCGTCTGACTTCCAAGCACGGGG
GGACTACAACTTCAACAAGAGAGGCCGACGCTAAGCTTCATCAAAGCCCA
AATCCAAAATCATGAAAAAGCAATGGGACGCTTAAAGCGAAGGGAGAAAA
AGAGA back to topprotein sequence of NO25G00290.2 >NO25G00290.2-protein ID=NO25G00290.2-protein|Name=NO25G00290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MTETKANKQDKKEAGDEEEEEEEEEEEEAFIQFHDSDDDDDGVAAGAQVG
VDEEDGEGGDKVEEDGGLLRPYTDVPWHRKGGLVTVTTGGGAGQKPITST
IKTDPTSLPPLLRLHNELLDFCDLLAPTKAELEARQRVTKIASNTVKALW
PDFDVQVFGSEATKVFLPESDIDMVVLPPQELPVHQVRNNLFQLAEAFKQ
EESVTGMEVIAKARVPIIKLRFLNLQVDISFSSDSGLKSARYMLERMEAL
PPLRPLILVFKYFLAQRELNETFTGGCGSFLLQLMLIAYLQHAQKEAEEA
SGSERTLNLGSLFLGVLRFYGHQLNYEEVGLSVLGDGILFRKLERGMFSY
DRPWVLAVENPLDSTLDVGKNSYNMPLLKEALAEAYTRLHNVLVSPPAGK
PISLLAVVIRPDQVLSGRPMPKRHIFQTRVFTPRKPYRPQVEREGAREGG
KEGKPLRARGIGRLRLPSPL* back to topmRNA from alignment at chr25:88089..91653- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00290.2 ID=NO25G00290.2|Name=NO25G00290.2|organism=Nannochloropsis oceanica|type=mRNA|length=3565bp|location=Sequence derived from alignment at chr25:88089..91653- (Nannochloropsis oceanica)
AGCCCTTCCTCCCCAACCACACTACCCACGCATTGACCAACAGGCAATAT
ATTTTTTATTCGCTGACCGCTGTAGAAGTAGGAGTAGCACCCGTTCCTGC
GGCATCAAGCCAATATGACGGAGACCAAGGCCAACAAACAAGACAAGAAA
GAGGCGGGTGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGC
CTTCATCCAGTTTCACGACTCGGACGACGGTACGGGCGTAGGGATTGTCA
TCGAGGAGGATGGAGGGGAGAGTGAGAGAAGGGGGGGGATGGTTGGAGTT
TAGGTAGTGATTTGTTTGTTTCTGCTGTTTGCATGCTCTGCGGCAGCCTC
TCAACGCCTCCCTCCCCCTCTCCACACCCAACACCACAGACGACGATGGC
GTCGCCGCCGGTGCACAAGTAGGGGTTGATGAGGAGGACGGGGAGGGAGG
AGACAAGGTAGAAGAGGACGGGGGGTTGCTGCGACCATATACAGATGTGC
CGTGGCATCGGAAGGGTGGCCTGGTCACTGTCACCACAGGAGGCGGTGCA
GGACAGGTACGGAGAGGGGATGGGGGAAGGATGAGGGATGGCGGGGGATC
AAGACAGGAACTGCTTGTGCTGACGTTCATACGCCGTTAATAATAAGGCA
CAAACCTCCTTTCTTTCCCCTTCCTTTGCTTCTCTTCGCCTCACGTCCTC
CCCCTGTAGAAACCCATCACCAGCACCATCAAGACGGACCCGACCTCCCT
CCCTCCCCTCCTGCGGCTGCACAATGAGCTCTTGGATTTTTGCGATTTGC
TGGCACCGACCAAGGCGGAGCTAGAGGCCCGGCAGAGGGTCACCAAGATT
GCCTCCAACACGGTAGATATGCGGGGAAGGAGGAACCATGAATGGAGAGG
AGGGGGAGGGGGGAAGAATGACATTGCGACCATGTCTGGTTTGGTGGGTG
CACTCACCACCTCTTTCCATCGATCTTTCTCTCCCTCCCTCCCTCCCTCC
CTCCCGTCCAACGCGGCAGGTGAAGGCGTTGTGGCCGGACTTCGACGTGC
AGGTGTTCGGGTCCGAAGCCACCAAGGTGAGGCCAGCGAGAGGGACAGGG
AGAGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGTGACGGAGTGAC
GGAGTGAGGGAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGAGAGGGAGGG
ACCAGACGGTGATTTTAAAAACTGTTGCGTTTGTCTTGATTCGCCCCTCC
TTCTGTCTCTCCCTCCCTCCGCCGCTCATCCTTCTCCCCTTACCGCAGGT
CTTCCTGCCCGAGAGCGACATCGACATGGTGGTGCTGCCACCCCAGGAGC
TGCCCGTGCACCAGGTCCGCAACAACCTCTTCCAGCTCGCCGAGGTGTGC
GGGAAGGCGGGGGGGGAGGGAGGGATGGAGGGAGGGAGGGAGGGAAGGAG
GGAAGAGACAGTGGTGAGAAGAGATGTGCCCCGAGGTGGAGGCGTTTGCC
TGATACGCAGGAAGCCCGTCACCAACCCCCCTCCCCTTCCCCCTCAGGCC
TTCAAGCAGGAGGAGTCGGTGACGGGCATGGAGGTGATCGCCAAGGCCCG
CGTGCCCATCATCAAGCTCCGCTTCCTCAACCTGCAGGTAAACTGGGAGC
AGCGCGGGGGAGGGGAAGGGACGGAGGGAAGGAGAGAGCTCAGGTGGAGG
GGTATTACGGCACACATCTTCGAGACCATTATTCCATCCTTCTCCCCCCG
CGCTCCTCCAGGTGGACATCTCCTTCTCCTCCGACTCCGGGCTCAAGTCC
GCGCGCTACATGCTCGAGCGCATGGAGGCCCTGCCCCCCCTCCGGCCCCT
CATCCTCGTCTTCAAGTACTTCCTGGTCAGCGGGAGGGAGGGAGGGAGAG
AGGGAGGGAGGGCGGGTCATAAGAACCCGTCGATGGTGAAAAGGAGAGAG
AAACGTGACAAGTGGGAAATAATGGGTTCATACATGCCGCCCTGTGACCG
TCCCTTCCCCCCTCCCTCCCTTTTGCCCTCCCTCCCCACCCGTAGGCCCA
GCGGGAGCTGAACGAGACTTTTACGGGCGGCTGCGGCTCCTTCCTCCTGC
AGCTCATGCTCATCGCCTACCTTCAGCACGCGCAGAAGGAGGCGGAGGAG
GTGAGGATGGGAATGAGGGAGGGAAGGGGGAAGGGACGGGAAGGGGAGAT
TTCGCCTCTCTGTGTCTGCCAGGCAAATCCGTGGGTCCGTCCGCCAATTC
AATTAAATCGTTAAAATTATTCATTTTTTATATATGTATAAGTCGCTCGC
TCGCCTGTCTTCTTTCTTCCTCCCGAATACTTCTGTGCAGTCGCGCTCAC
ATCCGTCCACCTTGCCCTCCTTCCCTCCCTTACTCCCCTCCTCCCTCCAG
GCTAGCGGCTCGGAACGCACTCTCAACCTGGGCTCCCTATTTTTGGGCGT
CCTTCGCTTCTACGGCCACCAGCTCAACTACGAGGAGGTGGGCCTGTCGG
TGCTGGGGGATGGCATCCTCTTCAGGAAGGTGAGGCCCAGGGGGAGGGGG
GAGAGGGGGAGGAGGAGGGGGGGCTTATGATGGGATGGGCAGCACCATCT
CATATCCCCCCATCCCCCCTCCTCCCCCTCTCCCTCCAGCTGGAGCGCGG
GATGTTCTCGTACGACCGCCCCTGGGTGCTGGCAGTGGAAAACCCGCTGG
ACTCGACGCTGGACGTGGGCAAGAACAGCTACAACATGCCCCTTCTCAAG
GAGGCCCTCGCGGAAGCCTACACCCGCCTGCACAACGTTCTGGTCTCTCC
GCCGGCAGGTGCGTCAGGGGGAGGAGGGAAGGAGGAGGGGGGGAGGGAGG
GGCAGTAGAGACTCTTGGATTTGATCGATTCCCGGTTGGTGGGTGCTTTC
CTCGGACCCACCTTCCCTCCCTCCCTCCCTCCTCCCTCTCTCCCTCCCTC
CCTCCTTCCTTCCCTCCAGGCAAGCCCATCTCTCTCCTCGCCGTGGTCAT
TCGCCCCGATCAAGTGCTGTCCGGGCGGCCCATGCCCAAACGCCATATCT
TTCAAACCCGCGTCTTCACTCCGCGCAAGCCTTATCGACCTCAGGTAGAG
AGGGAGGGCGCGAGGGAGGGAGGGAAGGAGGGAAAGCCTCTGAGGGCTCG
TGGAATCGGGCGCCTTCGACTCCCGTCTCCTCTTTGAATTCCTATGTCCC
TGCCTCCCAACACAGGTCAGCAGCAATGACAAATACCACAGTAGCGCCAG
CGGTAGCTTCGGCGGCATCGGCGGCATCGGCGGGGGGGGAGGGGCTGGGG
GAGGGAGGGAGGTGCGCATGGTCTCCACCAACGACTATGGAGGAAGAGGA
AGGGGAGGAGGTAGTGGAGGAGGTGGGGGAGAAGAGGGAGGGAAAAAGCG
CGGTAGATGGTCGGGGGGGCGGAGAGAGGATCAGCCGGCGTCTGACTTCC
AAGCACGGGGGGACTACAACTTCAACAAGAGAGGCCGACGCTAAGCTTCA
TCAAAGCCCAAATCCAAAATCATGAAAAAGCAATGGGACGCTTAAAGCGA
AGGGAGAAAAAGAGA back to topCoding sequence (CDS) from alignment at chr25:88089..91653- >NO25G00290.2 ID=NO25G00290.2|Name=NO25G00290.2|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr25:88089..91653- (Nannochloropsis oceanica)
ATGACGGAGACCAAGGCCAACAAACAAGACAAGAAAGAGGCGGGTGACGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCTTCATCCAGTTTC
ACGACTCGGACGACGACGACGATGGCGTCGCCGCCGGTGCACAAGTAGGG
GTTGATGAGGAGGACGGGGAGGGAGGAGACAAGGTAGAAGAGGACGGGGG
GTTGCTGCGACCATATACAGATGTGCCGTGGCATCGGAAGGGTGGCCTGG
TCACTGTCACCACAGGAGGCGGTGCAGGACAGAAACCCATCACCAGCACC
ATCAAGACGGACCCGACCTCCCTCCCTCCCCTCCTGCGGCTGCACAATGA
GCTCTTGGATTTTTGCGATTTGCTGGCACCGACCAAGGCGGAGCTAGAGG
CCCGGCAGAGGGTCACCAAGATTGCCTCCAACACGGTGAAGGCGTTGTGG
CCGGACTTCGACGTGCAGGTGTTCGGGTCCGAAGCCACCAAGGTCTTCCT
GCCCGAGAGCGACATCGACATGGTGGTGCTGCCACCCCAGGAGCTGCCCG
TGCACCAGGTCCGCAACAACCTCTTCCAGCTCGCCGAGGCCTTCAAGCAG
GAGGAGTCGGTGACGGGCATGGAGGTGATCGCCAAGGCCCGCGTGCCCAT
CATCAAGCTCCGCTTCCTCAACCTGCAGGTGGACATCTCCTTCTCCTCCG
ACTCCGGGCTCAAGTCCGCGCGCTACATGCTCGAGCGCATGGAGGCCCTG
CCCCCCCTCCGGCCCCTCATCCTCGTCTTCAAGTACTTCCTGGCCCAGCG
GGAGCTGAACGAGACTTTTACGGGCGGCTGCGGCTCCTTCCTCCTGCAGC
TCATGCTCATCGCCTACCTTCAGCACGCGCAGAAGGAGGCGGAGGAGGCT
AGCGGCTCGGAACGCACTCTCAACCTGGGCTCCCTATTTTTGGGCGTCCT
TCGCTTCTACGGCCACCAGCTCAACTACGAGGAGGTGGGCCTGTCGGTGC
TGGGGGATGGCATCCTCTTCAGGAAGCTGGAGCGCGGGATGTTCTCGTAC
GACCGCCCCTGGGTGCTGGCAGTGGAAAACCCGCTGGACTCGACGCTGGA
CGTGGGCAAGAACAGCTACAACATGCCCCTTCTCAAGGAGGCCCTCGCGG
AAGCCTACACCCGCCTGCACAACGTTCTGGTCTCTCCGCCGGCAGGCAAG
CCCATCTCTCTCCTCGCCGTGGTCATTCGCCCCGATCAAGTGCTGTCCGG
GCGGCCCATGCCCAAACGCCATATCTTTCAAACCCGCGTCTTCACTCCGC
GCAAGCCTTATCGACCTCAGGTAGAGAGGGAGGGCGCGAGGGAGGGAGGG
AAGGAGGGAAAGCCTCTGAGGGCTCGTGGAATCGGGCGCCTTCGACTCCC
GTCTCCTCTTTGA back to top
|