|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr24 | genome | chr24:679094..682759 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G02480.1 vs.
Match: EWM24460.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 487.3 bits (1253), Expect = 5.300e-134 Identity = 259/351 (73.79%), Postives = 292/351 (83.19%), Query Frame = 0
Query: 113 LEKERKLQTTIPMLGKIEAWEEARKQGAKEVLEIKPSKRRRRTAPSSTPSTSSSSFTSSS-------SSPDEKGGL--KGGREEEEGEEEEEEEEEYVPIDAMYRDELDISAADGTNMRGYLVSSKMAQQFWRREERPVVLLLTDERGWRSVQMRKLADHMAFLTNHVFLVPDLYRGEVYGEDSTKEAWREAHPPIRLLQDARSAMACLVRNYNATATGIVGFGVGGGQALSAVASGYIKSHAVVAMSPSGYDAPKVAEALQATPTLVVFAGQDSEEAPLQDALTLMDGFASHKALPYMVRVFKDCHSHFLTRPKQGEEGPAEDAVMLATSWLEIQLRRGKAKMIRDSRIV 455
+EKER+LQ +PML +EAWEEAR +GAKEV+EI P R+ TA +S + +EK G+ K +EEEE EEEEEEEEEYVPIDAM+RDE+D++AADGT+MRGYLVSSKMAQ+FWRREERPVVLLL DERGWRSVQ RKLADHM+FL+NHVF VPDLYRG+V+ + +KEAWR AHPPIRLLQDARSAM LVRNYNATATGIVGFGVGGGQALSAVASG+IK+HAVVAM P GYDAPKVAEAL++TP LV+F GQD+ EAPLQ+ALTLMDGFASHKALPYMVRVFKDCH HFLTRP EE AEDA+MLATSWLEIQLRRGKAKMIRDSRI+
Sbjct: 1 MEKERRLQAAMPMLQTVEAWEEARMEGAKEVVEITPRLPRKPTARASEGKMKEKKKDGAGFKDEEGLRQEEEKEGVEAKEVKEEEEEEEEEEEEEEYVPIDAMFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRPAPNEESAAEDAIMLATSWLEIQLRRGKAKMIRDSRIL 351
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G02480.1 ID=NO24G02480.1|Name=NO24G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1600bp
TCCTCGAACCCCCCAACCCCCCCCTCCTCATCTGCTGCCACTGCTGTTGC
CGCCGACGACGTCGAGGCGTTGTACGTGTCGTCCATGCCGGACTACCCGC
CTGACGCCCCGCAGCACCAGATCAAGAAGCGACATGTGGGGTGGGACGGA
GCCCTGGAAGGGTACACACTGGCAGATGGCAGCTATGTGGGCGTCAAGGA
GGATCCCCGCCTCAACGACAAGGACCGGCGGGACATGGAGGAGGCTTTTC
GCAAGGAGGTGCTTCGGTGGGAAGCTGACTATCCGCAGCAGTGGGCCCAG
CTGATGAGCATGTGCGACGAGGCAGCCGCAACCAAGCAGGCGGCGATTGG
CGTGGAGGCAGCCCTGAAGGAGCGGGAGAAGGACGAGGAGATGGAGAAGC
GGGTGAGGGAGATCGAGAGGCTGGAGAAGGAGAGGAAGCTGCAGACGACC
ATCCCGATGCTCGGGAAGATAGAGGCCTGGGAGGAGGCGAGGAAGCAGGG
CGCGAAGGAGGTACTGGAGATCAAGCCCAGCAAAAGAAGGCGTCGCACCG
CCCCATCCTCCACCCCCTCCACTTCGTCCTCCTCCTTCACGTCCTCCTCA
TCTTCCCCGGATGAGAAGGGGGGCCTGAAGGGGGGGCGAGAGGAGGAGGA
AGGTGAGGAGGAGGAGGAGGAGGAGGAAGAGTACGTGCCTATCGATGCCA
TGTACCGCGACGAGCTCGACATCTCCGCTGCTGATGGGACCAACATGCGC
GGCTACCTAGTCTCCAGTAAGATGGCCCAGCAATTCTGGCGACGGGAAGA
GAGGCCCGTCGTCCTCCTGCTCACGGATGAAAGGGGATGGCGGAGTGTCC
AAATGCGGAAGCTGGCCGACCACATGGCATTCTTGACGAACCACGTGTTT
TTAGTGCCCGACTTGTACAGAGGCGAGGTCTACGGGGAGGATAGCACCAA
GGAGGCGTGGAGGGAGGCGCACCCGCCCATCCGCCTCCTCCAAGACGCCC
GGAGCGCCATGGCCTGTCTTGTGCGGAACTACAACGCCACCGCTACTGGC
ATCGTGGGCTTCGGTGTCGGGGGTGGGCAAGCTCTCTCCGCCGTTGCTAG
TGGCTACATCAAGTCCCACGCCGTGGTGGCCATGTCCCCTTCTGGCTACG
ACGCGCCTAAGGTCGCGGAGGCCCTGCAGGCGACCCCCACACTGGTAGTC
TTTGCCGGTCAGGACAGCGAAGAGGCACCGCTTCAGGACGCCCTGACCTT
GATGGACGGCTTTGCCTCACACAAAGCACTGCCTTACATGGTCCGGGTAT
TTAAAGACTGCCATTCCCACTTTCTCACCCGCCCAAAGCAAGGGGAGGAG
GGGCCGGCGGAGGATGCCGTGATGCTGGCCACCAGCTGGTTGGAGATACA
GCTGCGGAGAGGGAAGGCCAAGATGATAAGAGACTCCCGAATTGTCTAGG
GAGGGAGAGAGGGAGGAAGGTTGAGAGAAATGTATGTAATTAAGAGGAGT
TGGAGAACCAGCTTCCATAAAATATAAGGGGAGAGGTGAAAAGAAGAAGA
AAACTAGAGCAGTTGTGACACAAATCGAACCTGGAAAGATCGGGCGCAGA back to topprotein sequence of NO24G02480.1 >NO24G02480.1-protein ID=NO24G02480.1-protein|Name=NO24G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MPDYPPDAPQHQIKKRHVGWDGALEGYTLADGSYVGVKEDPRLNDKDRRD
MEEAFRKEVLRWEADYPQQWAQLMSMCDEAAATKQAAIGVEAALKEREKD
EEMEKRVREIERLEKERKLQTTIPMLGKIEAWEEARKQGAKEVLEIKPSK
RRRRTAPSSTPSTSSSSFTSSSSSPDEKGGLKGGREEEEGEEEEEEEEEY
VPIDAMYRDELDISAADGTNMRGYLVSSKMAQQFWRREERPVVLLLTDER
GWRSVQMRKLADHMAFLTNHVFLVPDLYRGEVYGEDSTKEAWREAHPPIR
LLQDARSAMACLVRNYNATATGIVGFGVGGGQALSAVASGYIKSHAVVAM
SPSGYDAPKVAEALQATPTLVVFAGQDSEEAPLQDALTLMDGFASHKALP
YMVRVFKDCHSHFLTRPKQGEEGPAEDAVMLATSWLEIQLRRGKAKMIRD
SRIV* back to topmRNA from alignment at chr24:679094..682759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G02480.1 ID=NO24G02480.1|Name=NO24G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3666bp|location=Sequence derived from alignment at chr24:679094..682759- (Nannochloropsis oceanica)
TCCTCGAACCCCCCAACCCCCCCCTCCTCATCTGCTGCCACTGCTGTTGC
CGCCGACGACGTCGAGGCGTTGTACGTGTCGTCCATGCCGGACTACCCGC
CTGACGCCCCGCAGCACCAGATCAAGAAGCGACATGTGGGGTGGGACGGA
GCCCTGGAAGGGTACACACTGGCAGATGGCAGCTATGTGGGCGTCAAGGT
AGGGAGGAAGGGAGGGAGTGAGGGAGAGAGGAAGGGAGGGAATTGCTTAC
CACTACATGGATGTTCTAGTGGAGGGTTTATCTCACATTCTTCTCTTCCC
TCTACCTGTGTGTGTGTGTCTCGCTCCCTCTCTTTTCCTCAATCTGCTTT
TATTCCTCTTCTCGGCTCTGTAACAGGAGGATCCCCGCCTCAACGACAAG
GACCGGCGGGACATGGAGGAGGCTTTTCGCAAGGAGGTGCTTCGGTGCGT
CCCTCCCTTCCTCCCTTCCTCGCTCTATACCCATCCTCATCCATCCTATC
CCTTATTTCAACCTTTTCTCTGGCCCACCCTGCGCTGCCCACTCCTCCCT
CCCCACCATCTCACTCCCTTCTCCTGCTTTCTCTCTCTCCCTCCCTCCCT
CCCTCCCTCCGCTCTTCCGTCCCTCGTAGGTGGGAAGCTGACTATCCGCA
GCAGTGGGCCCAGCTGATGAGCATGTGCGACGAGGCAGCCGCAACCAAGC
AGGCGGCGATTGGCGTGGTAGGGAGGGAGGGAGAAAGGGAGGGAGGAAGG
AAGGGATGACCGGAGGACAGAGATGGAGGAGCAGGGGCGTGGTGCTGTGC
TGGAAGCTTTGGCCCTCTTCTTGCCTTTGGATGGAACGCGTAAACTCGCG
CTCCTTCCCCCCCTCCCTCCCTTCCTTTCTCCCTCATTGAAGCAGCTCTG
TCTAAGCAGGAGGACGAGAGCGAGGGACAGGTGCCAAAAATTGAGAGATC
GGAATCGGAAGAGCAACCACTGACCTCCCCTCCCTCCCTACACCCCTCTC
CTCTCCTCCCTTTACCGCACCAGGAGGCAGCCCTGAAGGAGCGGGAGAAG
GACGAGGAGATGGAGAAGCGGGTGAGGGAGATCGAGAGGCTGGAGAAGGA
GAGGAAGCTGCAGACGACCATCCCGATGCTCGGGAAGATAGAGGCCTGGG
AGGAGGCGAGGAAGCAGGGCGCGAAGGAGGTACTGGAGATCAAGCCCAGG
TAGGGAGGGAGGGAAGGAGGGAGGGAGGAGCAGAAAGAAATAAAGCAGTT
TTTGTCATCCTGTTCCATCGTTAAGTCGCACTCACGCCTGCTCTTCCTCC
CTCTCCCTTCCTCCCTCCCTCCGCCCCCCTTCCTTCTTGCCAGCAAAAGA
AGGCGTCGCACCGCCCCATCCTCCACCCCCTCCACTTCGTCCTCCTCCTT
CACGTCCTCCTCATCTTCCCCGGATGAGAAGGGGGGCCTGAAGGGGGGGC
GAGAGGAGGAGGAAGGTGAGGAGGAGGAGGAGGAGGAGGAAGAGTACGTG
CCTATCGATGCCATGTACCGCGACGAGCTCGACATCTCCGCTGCTGATGG
GACCAACGTACGTCCTCCCTCCTTCCCTCCCTTCTTCCCTTCCTCCTTCC
CTTCTTTCCTACCTCCATTTCTGCCTCCTACTCCTCTTCTATGTCCTCCC
TCTCGCCCTTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCAGATGCGCGGC
TACCTAGTCTCCAGTAAGATGGCCCAGCAATTCTGGCGACGGGAAGAGAG
GCCCGTCGTCCTCCTGCTCACGGATGAAAGGGGATGGTAAGAGAAGGGAG
GGAGAGAGGGAGAGGGACAGGGAGGGAGGGAGCTGAATGTCGAGACTGTC
GCCACCTCCTCTTATGACTCCCAAGCAGCTCGCGCCTCTCCCTATTTATC
TCCCTACCTCTTTCCCTCCCTTCCCTTCTCCCCTCTCTCGATCTGCAGGC
GGAGTGTCCAAATGCGGAAGCTGGCCGACCACATGGCATTCTTGACGAAC
CACGTGTTTTTAGTGCCCGACTTGTACAGAGGCGAGGTCTACGGGGAGGA
TAGCACCAAGGAGGCGTGGAGGGAGGCGGTGAGCGAGGGAGGGAAAGAGA
GACGGAGGATGACGAAGGCGGATAGAAGACTGGATGGGATGGCGATGTTT
GACTCACTTCTTTTTTGTTCTCTCCTCTCTTTTCTCCCTCCTTCCTTCCC
TCTTTACTCCTTTGTGTAGCACCCGCCCATCCGCCTCCTCCAAGACGCCC
GGAGCGCCATGGCCTGTCTTGTGCGGAACTACAACGCCACCGCTACTGGT
ACGTTCTATCCCCTCCTCCCTCTCTCCCTCCTCTCTCCTCTCGCTCTCTC
TTCCCTCATCCCTTACATCCTTTGGGGGTCAAACCAAACCACACTCTTTT
TCCTCCATCGTCGTGTATCCGCCCTACGTACCCGTGTCATCCGATCTACA
CCTTCCGGAGCCCTGTCACCCTCTATACTTAGACTATTTGCAGTCATATC
ACCTTGTTGACACTCATACATGTATATATATATATATCACCCTACACATA
CTCTTTTCCCAATTTACACTCCATTTATCCCAATTACCCTACAAACAGGC
ATCGTGGGCTTCGGTGTCGGGGGTGGGCAAGCTCTCTCCGCCGTTGCTAG
TGGTACGTCTCCTTCCACCTCCCTCATTTCCTCCCTCTCTCCCTCCTCCC
CCTCCTTCTCCCCTGTCACTTCTCATCTCTTACTCCCCGCCCTCCTTCCT
CAAGCGATATCAAAAACGCACGACTTATCCTCCCTCCCTCCCTCCCTCTG
CCAGGCTACATCAAGTCCCACGCCGTGGTGGCCATGTCCCCTTCTGGCTA
CGACGCGCCTAAGGTCGCGGAGGCCCTGCAGGCGACCCCCACACTGGTAG
TCTTTGCCGGTCAGGACAGCGAAGAGGTTAGGAAGGGAGGGAGGAAAGGA
GGGAAGGAGAGAGGGAAGGGGGGACAGACAGGGGGAGTGCATACTACATG
CACCCAAAATGTCCAAAGTCTTGTCTGAGGTTCCCACACTTCTAGTGTAG
GAGCAGTGGGCGGGTGGACGGTCGTGGGAGAGATGTGAGAGAACTTCGGC
GATTGGAATAAATGTGGTCTAGTATTGTAATCCTCTTCCCATCTATACTC
TTTCTAACAGGCACCGCTTCAGGACGCCCTGACCTTGATGGACGGCTTTG
CCTCACACAAAGCACTGCCTTACATGGTGGGTGTCAGTCTCCTGCCCTCC
TTCTTTCGCTCCTTTTCCCCTTCGTTCCCATTGAAATTTCTTGTAATCCT
TCCCCCCTCCCTCCCCTTTCCTCGCTCCATCCTTTGCTTTTTCCTTCCCT
CCCCAGGTCCGGGTATTTAAAGACTGCCATTCCCACTTTCTCACCCGCCC
AAAGCAAGGGGAGGAGGGGCCGGCGGAGGATGCCGTGATGCTGGCCACCA
GCTGGTTGGAGATACAGCTGCGGAGAGGGAAGGCCAAGATGATAAGAGAC
TCCCGAATTGTCTAGGGAGGGAGAGAGGGAGGAAGGTTGAGAGAAATGTA
TGTAATTAAGAGGAGTTGGAGAACCAGCTTCCATAAAATATAAGGGGAGA
GGTGAAAAGAAGAAGAAAACTAGAGCAGTTGTGACACAAATCGAACCTGG
AAAGATCGGGCGCAGA back to topCoding sequence (CDS) from alignment at chr24:679094..682759- >NO24G02480.1 ID=NO24G02480.1|Name=NO24G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr24:679094..682759- (Nannochloropsis oceanica)
ATGCCGGACTACCCGCCTGACGCCCCGCAGCACCAGATCAAGAAGCGACA
TGTGGGGTGGGACGGAGCCCTGGAAGGGTACACACTGGCAGATGGCAGCT
ATGTGGGCGTCAAGGAGGATCCCCGCCTCAACGACAAGGACCGGCGGGAC
ATGGAGGAGGCTTTTCGCAAGGAGGTGCTTCGGTGGGAAGCTGACTATCC
GCAGCAGTGGGCCCAGCTGATGAGCATGTGCGACGAGGCAGCCGCAACCA
AGCAGGCGGCGATTGGCGTGGAGGCAGCCCTGAAGGAGCGGGAGAAGGAC
GAGGAGATGGAGAAGCGGGTGAGGGAGATCGAGAGGCTGGAGAAGGAGAG
GAAGCTGCAGACGACCATCCCGATGCTCGGGAAGATAGAGGCCTGGGAGG
AGGCGAGGAAGCAGGGCGCGAAGGAGGTACTGGAGATCAAGCCCAGCAAA
AGAAGGCGTCGCACCGCCCCATCCTCCACCCCCTCCACTTCGTCCTCCTC
CTTCACGTCCTCCTCATCTTCCCCGGATGAGAAGGGGGGCCTGAAGGGGG
GGCGAGAGGAGGAGGAAGGTGAGGAGGAGGAGGAGGAGGAGGAAGAGTAC
GTGCCTATCGATGCCATGTACCGCGACGAGCTCGACATCTCCGCTGCTGA
TGGGACCAACATGCGCGGCTACCTAGTCTCCAGTAAGATGGCCCAGCAAT
TCTGGCGACGGGAAGAGAGGCCCGTCGTCCTCCTGCTCACGGATGAAAGG
GGATGGCGGAGTGTCCAAATGCGGAAGCTGGCCGACCACATGGCATTCTT
GACGAACCACGTGTTTTTAGTGCCCGACTTGTACAGAGGCGAGGTCTACG
GGGAGGATAGCACCAAGGAGGCGTGGAGGGAGGCGCACCCGCCCATCCGC
CTCCTCCAAGACGCCCGGAGCGCCATGGCCTGTCTTGTGCGGAACTACAA
CGCCACCGCTACTGGCATCGTGGGCTTCGGTGTCGGGGGTGGGCAAGCTC
TCTCCGCCGTTGCTAGTGGCTACATCAAGTCCCACGCCGTGGTGGCCATG
TCCCCTTCTGGCTACGACGCGCCTAAGGTCGCGGAGGCCCTGCAGGCGAC
CCCCACACTGGTAGTCTTTGCCGGTCAGGACAGCGAAGAGGCACCGCTTC
AGGACGCCCTGACCTTGATGGACGGCTTTGCCTCACACAAAGCACTGCCT
TACATGGTCCGGGTATTTAAAGACTGCCATTCCCACTTTCTCACCCGCCC
AAAGCAAGGGGAGGAGGGGCCGGCGGAGGATGCCGTGATGCTGGCCACCA
GCTGGTTGGAGATACAGCTGCGGAGAGGGAAGGCCAAGATGATAAGAGAC
TCCCGAATTGTCTAG back to top
|