NO24G02350.1, NO24G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02350.1
Unique NameNO24G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2190
Alignment locationchr24:639031..642628 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:639031..642628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02350.1 vs.
Match: XP_005847983.1 (hypothetical protein CHLNCDRAFT_145492 [Chlorella variabilis]; EFN55881.1 hypothetical protein CHLNCDRAFT_145492 [Chlorella variabilis])

HSP 1 Score: 131.0 bits (328), Expect = 7.800e-27
Identity = 99/261 (37.93%), Postives = 124/261 (47.51%), Query Frame = 0 
Query:   66 RDAMGGLSGGMTSVVGGFGLGLASLVAAPTIGAQQYGVKGFLAGLGAGLAGCVVLPVGGGGWRLLHHRRRGEYSHLCPSNVSRSRLGLAFAKMGQIRFEGGGCACPGRQGGRGRGRDSGNNNCSSNSIYRRKWRGGQGRKKGGREGGREGGGEEEARSLYEILGVDRTASPDTIKKAYYRAALAVHPDRVVAHDRYTQGRFQRLSEAYQILSTPDLRAAYDKEGMKACQHATFIDGDVFFTMLFGSERFRPYLGKLFLASA 327
            RD   GL+ G  S+  G   G   LVAAP IGA Q G KGF  G  AG+AG V+LPV G         R    +    SN S+ R     A    I   G   A  G                      R +WR  Q R +GG      GGGE   +  YE+LGV+R ASP+ IK+ YY  A  +HPD+    D     +FQRL EAYQ+L   +LR  YD  G +      ++DG  FFT LFGS+RF   +G+L L +A
Sbjct:   23 RDLGAGLASGAKSIAKGVLAGAIGLVAAPAIGAAQDGFKGFAKGAAAGIAGAVILPVTGVAVGTAQVVRGAVNTPEAISNASKGR-HWDEASRSWIDAPGMALAVDG----------------DDQRAARSQWRRVQQRARGG------GGGEGVEQEFYELLGVERDASPEEIKRQYYLLARRMHPDKNPG-DPEANAKFQRLGEAYQVLGNAELRKRYDAHGAEGLD-VNYVDGAEFFTALFGSDRFSHLVGELMLTAA 258
The following BLAST results are available for this feature:
BLAST of NO24G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005847983.17.800e-2737.93hypothetical protein CHLNCDRAFT_145492 [Chlorella ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02350NO24G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02350.1NO24G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02350.1.cds1NO24G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds2NO24G02350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds3NO24G02350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds4NO24G02350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds5NO24G02350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds6NO24G02350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds7NO24G02350.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds8NO24G02350.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02350.1.cds9NO24G02350.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02350.1 ID=NO24G02350.1|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp
CTTCGAGTCGGCTGCAGAAAGGAGAGTGGTGACCGGCCTGTTTCTTACTA
TGTGGTAGTGTGTCGATGTGTTGTGGGGCGAGCCGCGTGGATAAGCGTGG
ATCTGGGGCGTTGTATGGAATGCAAGCAAGATACATGGCTCTGTGTGTTG
ATCACCAGGAGCTTGGGCTGAGGAAAATCAGCCTGTATCCCACACAAACA
CCAATCGATCCCCCCCCCACACGACAAGATGACATGATACGAAAGCCATC
GCCATGATTGGTGTCAAAGGAATAAAAGGCTGGCCGGACTAGTCACGCTG
ACGACTGATGATTATGAAGTGTATAATTCTTCCGGCGTTGGGGGGGGAAT
CATTGACGATTGTGGGATCGTGAGTGACTTTCCTTGTGCCTTATTTTCTT
ACTTGTTGGAAACCAAACACACGTGCTACTAGGCCAAGAGCCTTCCCAAC
TTTACAATTCAGTGACACAGAGCAAAACTCCCCCTGCGAGAAGGGGTTTC
TGGCCGCTTTCAATTCATAAGTGAGCCTCCAGAGCCCCAAGGATCGCCTG
TTCGCCGCGCCAGCGCAACACCTGCCGCAAAGCTGCCCACACGATTGATT
CAACTCAAGTTCCACTTCCACTTGTCCCCGTCCTGACCCACACCCACACC
CACGCCCATAGGAAGTTCGAGTTTTGGCAGGCACCTGTCTCGTACTGTGT
ACATGACTTTTTTGCCGCTGGCCAAGGTTAACTTTTGCTACGTCCGCCTT
CGCCCGATCATGTCCCGCTGCTGATGGCCATCCTCGAGCCACAGCCACCC
CAAAAAGGCACACAGAACCCATCCATTACAGCAACAGATTGCGGCATATG
TCCAACTTATCGTCGCTCGTGTCTAGCCAAATTGTCCTTTTTTCTACGCC
TTCTCCTCTGACCTTCGTTCTTCCCCTTCCACCCCCACCCCTAACCGACC
GTCCCATTGTACGTTGTACAGAGAGCGCGATGAACACCCCACCACCACTC
TATCCCTCGCCGAGGGGCTCCCCACCATCGATGTGGGACGCCGTGCTGCC
CGAGAACAAGACGATCCGCCGGGCTCGCTGGGGGGCTTGATGAGATCTGC
CTCCACATCCTCCCCTTCAGTGTCTCTTGGAGGCGCTCGTCTTCCCCCTT
CGCCCTCCTCCGCCCTCGCCCTCTCCCGGAGTAGCAGCAGCAGCAGCATG
GGCAACCAGAGCACCGGTAAGGGCGGAAATAGCCTTGTAACTTGGGCTCA
TTCCTCCTCGCGGTCACTTTTGAATCATTCGGCGCGAGATGCGATGGGTG
GGCTCTCAGGCGGGATGACTTCGGTAGTTGGCGGATTCGGTCTCGGCCTG
GCATCCCTCGTCGCCGCCCCGACCATCGGTGCGCAGCAATACGGCGTGAA
GGGCTTCCTCGCCGGCCTCGGTGCGGGGCTAGCGGGCTGCGTGGTGCTGC
CAGTGGGGGGTGGTGGGTGGCGTCTCCTACATCATAGGCGGCGTGGTGAA
TACTCCCACCTCTGTCCTTCAAATGTCTCGAGGTCGCGTCTGGGACTCGC
TTTTGCAAAAATGGGTCAAATACGATTTGAAGGAGGAGGCTGCGCGTGTC
CTGGACGGCAAGGAGGAAGAGGACGAGGACGAGACAGCGGCAACAACAAC
TGCAGCAGCAACAGCATCTACAGAAGAAAGTGGAGGGGAGGGCAAGGACG
AAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGAGGAGGAAG
CACGGTCGCTCTACGAGATTTTGGGGGTGGATCGAACGGCCTCGCCCGAC
ACCATCAAAAAGGCCTACTACAGGGCCGCTCTGGCAGTGCATCCAGATCG
GGTAGTGGCCCACGACCGTTACACCCAAGGCCGTTTCCAACGGCTCTCGG
AGGCCTACCAGATTCTCTCCACCCCCGATCTCAGGGCCGCCTACGACAAG
GAAGGAATGAAGGCCTGCCAGCACGCCACCTTCATCGACGGCGACGTCTT
CTTTACCATGCTCTTTGGCTCCGAGCGCTTTCGGCCTTATCTGGGAAAAC
TTTTTTTAGCCTCCGCCATTGGCGTTCTGGGGAAGCTCAGTGTCAGTGGC
ACCGAAGCCGACCTGTCGTTTGCAGACAAGGAGGACGAGGCCCAGGAAGG
GGGGAGGGAGGGGAGGAGGGAAAGAAGGATGGAGGAGTAA
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protein sequence of NO24G02350.1

>NO24G02350.1-protein ID=NO24G02350.1-protein|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MRSASTSSPSVSLGGARLPPSPSSALALSRSSSSSSMGNQSTGKGGNSLV
TWAHSSSRSLLNHSARDAMGGLSGGMTSVVGGFGLGLASLVAAPTIGAQQ
YGVKGFLAGLGAGLAGCVVLPVGGGGWRLLHHRRRGEYSHLCPSNVSRSR
LGLAFAKMGQIRFEGGGCACPGRQGGRGRGRDSGNNNCSSNSIYRRKWRG
GQGRKKGGREGGREGGGEEEARSLYEILGVDRTASPDTIKKAYYRAALAV
HPDRVVAHDRYTQGRFQRLSEAYQILSTPDLRAAYDKEGMKACQHATFID
GDVFFTMLFGSERFRPYLGKLFLASAIGVLGKLSVSGTEADLSFADKEDE
AQEGGREGRRERRMEE*
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mRNA from alignment at chr24:639031..642628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02350.1 ID=NO24G02350.1|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3598bp|location=Sequence derived from alignment at chr24:639031..642628- (Nannochloropsis oceanica)
CTTCGAGTCGGCTGCAGAAAGGAGAGTGGTGACCGGCCTGTTTCTTACTA
TGTGGTAGTGTGTCGATGTGTTGTGGGGCGAGCCGCGTGGATAAGCGTGG
ATCTGGGGCGTTGTATGGAATGCAAGCAAGATACATGGCTCTGTGTGTTG
ATCACCAGGAGCTTGGGCTGAGGAAAATCAGCCTGTATCCCACACAAACA
CCAATCGATCCCCCCCCCACACGACAAGATGACATGATACGAAAGCCATC
GCCATGATTGGTGTCAAAGGAATAAAAGGCTGGCCGGACTAGTCACGCTG
ACGACTGATGATTATGAAGTGTATAATTCTTCCGGCGTTGGGGGGGGAAT
CATTGACGATTGTGGGATCGTGAGTGACTTTCCTTGTGCCTTATTTTCTT
ACTTGTTGGAAACCAAACACACGTGCTACTAGGCCAAGAGCCTTCCCAAC
TTTACAATTCAGTGACACAGAGCAAAACTCCCCCTGCGAGAAGGGGTTTC
TGGCCGCTTTCAATTCATAAGTGAGCCTCCAGAGCCCCAAGGATCGCCTG
TTCGCCGCGCCAGCGCAACACCTGCCGCAAAGCTGCCCACACGATTGATT
CAACTCAAGTTCCACTTCCACTTGTCCCCGTCCTGACCCACACCCACACC
CACGCCCATAGGAAGTTCGAGTTTTGGCAGGCACCTGTCTCGTACTGTGT
ACATGACTTTTTTGCCGCTGGCCAAGGTTAACTTTTGCTACGTCCGCCTT
CGCCCGATCATGTCCCGCTGCTGATGGCCATCCTCGAGCCACAGCCACCC
CAAAAAGGCACACAGAACCCATCCATTACAGCAACAGATTGCGGCATATG
TCCAACTTATCGTCGCTCGTGTCTAGCCAAATTGTCCTTTTTTCTACGCC
TTCTCCTCTGACCTTCGTTCTTCCCCTTCCACCCCCACCCCTAACCGACC
GTCCCATTGTACGTTGTACAGAGAGCGCGATGAACACCCCACCACCACTC
TATCCCTCGCCGAGGGGCTCCCCACCATCGATGTGGGACGCCGTGCTGCC
CGAGAACAAGACGATCCGCCGGGCTCGCTGGGGGGCTTGATGAGGTAAGG
AAGGAGAGGGCGGAGGGAAGGCAGGGATAGGGAAAGGACAAGTTGATTAT
GTACATTTTTAAAAGAAAGAAAAAAGGTGTCCATCCATTTACTCACATTG
CTGACCTGCACCCTCCTCTCCCATGTAGATCTGCCTCCACATCCTCCCCT
TCAGTGTCTCTTGGAGGCGCTCGTCTTCCCCCTTCGCCCTCCTCCGCCCT
CGCCCTCTCCCGGAGTAGCAGCAGCAGCAGCATGGGCAACCAGAGCACCG
GTAAGGGCGGAAATAGCCTTGTAACTTGGGCTCATTCCTCCTCGCGGTCA
CTTTTGAATCATTCGGCGCGGTAAGGAAGGAGGGAGGGAGGGAGGGAGGG
AAGGAAGGAAGGAGGGAGGGATGATGGGAACGCGGAGTAACTGTGCCACC
TCTCGATCCTAAAAAGCTCAACTTCCTTCCCTCCTTTCCTCCCTTCCTCC
CACCCTTCTTCTCTCTAGAGATGCGATGGGTGGGCTCTCAGGCGGGATGA
CTTCGGTAGTTGGCGGATTCGGTCTCGGCCTGGCATCCCTCGTCGCCGCC
CCGACCATCGGTGCGCAGCAATACGGTACGTTGTTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCTCTCTCCCTCCCTTAATATACAAGGCGAGCAAGC
GATAGACATCTGTCCAAATCGCCTACCTCCCTCCTTCCATCCCTCCCGCT
CCCGTTTCCTTGTGCATTGCCTCCCTATTTACAGACATGAAAAAATACAC
CCATGAGTAAAGGAGGTGTATCTGTATACATACAGTTCTTGCATTTTTTC
TTCAGGCGTGAAGTATTTCACCTGCTCTCAGCGCTAACCCTCCTTCCCAC
TCCCTCCCTCCCTCTCTCCCTCCCTCCCTCTCTCTCTCCCCCTCCCTCCC
CCTCTCCCTCCCTCCCCCTCTTCCTCCCTCCCTCCCTCCCTCCCTTCTTA
GGCGTGAAGGGCTTCCTCGCCGGCCTCGGTGCGGGGCTAGCGGGCTGCGT
GGTGCTGCCAGTGGGGGGTGGTGGGTGGCGTCTCCTACATCATAGGTAGG
TGAGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAAAGAGGGAAGAAGTCT
CCCCACATCATATGCTTATTCTTGCCTCATGCGCACCCTCCCTCCCTAGG
CGGCGTGGTGAATACTCCCACCTCTGTCCTTCAAATGTCTCGAGGTCGCG
TCTGGGACTCGCTTTTGCAAAAATGGGTCAAGTGCGTTGCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCCTCTTCCTTA
CTACTTCAATCGTGCTGAACCTCCTCCTCCCCTTTCTCCCTCTTTCCGTC
CTTCCCTAGATACGATTTGAAGGAGGAGGCTGCGCGTGTCCTGGACGGCA
AGGAGGAAGAGGACGAGGACGAGACAGCGGCAACAACAACTGCAGCAGCA
ACAGCATCTACAGAAGAAAGTGGAGGGGAGGGCAAGGACGAAAGAAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGAGGAGGAAGCACGGTCGCT
CTACGAGATTTTGGGGGTGGATCGAACGGCCTCGCCCGACACCATCAAAA
AGGCCTACTACAGGGTAGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGAAGAAGAAAAGAAACGTGCTAGAATAGCTCATGGGTTACCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGGCCGCTCTGGCAG
TGCATCCAGATCGGGTAGTGGCCCACGACCGTTACACCCAAGGCCGTTTC
CAACGGCTCTCGGAGGCCTACCAGATTCTCTCCACCCCCGATCTCAGGGC
CGCCTACGACAAGGAAGGAATGAAGGTAGGGACCCTCCCTCCCTCCCTCC
CTCCCTCCCTATCGACCTATACGAGGCGTTTCACTCAAACTGCGTGTGAT
ATCGTGCATGTATCACCTGAATTCGGACTCTTTGCTTTCCCTCCCTCCCT
CCCTCCTTCCTTCCCTCCCTTCATACCCTGTAGTCCTCCCTCCCTCCCTC
CCTCCCTCACTCCCTCAAATAATTCCTTACCCTCTCCTCCCTCCCTCCCT
CTCTCCCCCCTTCCCTCCCTCCAGGCCTGCCAGCACGCCACCTTCATCGA
CGGCGACGTCTTCTTTACCATGCTCTTTGGCTCCGAGCGCTTTCGGCCTT
ATCTGGGAAAACTTTTTTTAGCCTCCGCCATTGGTACTTTTCCCTCCCTC
CCTTCCTCCCTACCTTACTCCCTCTCTTGTTTGTTTTTTCGCTCTGACCT
CTTTTCCTGTTTTATTCACCCGATAAAGACATTAAACTCGCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCGTTCTGGGGAAGCTCAGTG
TCAGTGGCACCGAAGCCGACCTGTCGTTTGCAGACAAGGAGGACGAGGCC
CAGGAAGGGGGGAGGGAGGGGAGGAGGGAAAGAAGGATGGAGGAGTAA
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Coding sequence (CDS) from alignment at chr24:639031..642628-

>NO24G02350.1 ID=NO24G02350.1|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr24:639031..642628- (Nannochloropsis oceanica)
ATGAGATCTGCCTCCACATCCTCCCCTTCAGTGTCTCTTGGAGGCGCTCG
TCTTCCCCCTTCGCCCTCCTCCGCCCTCGCCCTCTCCCGGAGTAGCAGCA
GCAGCAGCATGGGCAACCAGAGCACCGGTAAGGGCGGAAATAGCCTTGTA
ACTTGGGCTCATTCCTCCTCGCGGTCACTTTTGAATCATTCGGCGCGAGA
TGCGATGGGTGGGCTCTCAGGCGGGATGACTTCGGTAGTTGGCGGATTCG
GTCTCGGCCTGGCATCCCTCGTCGCCGCCCCGACCATCGGTGCGCAGCAA
TACGGCGTGAAGGGCTTCCTCGCCGGCCTCGGTGCGGGGCTAGCGGGCTG
CGTGGTGCTGCCAGTGGGGGGTGGTGGGTGGCGTCTCCTACATCATAGGC
GGCGTGGTGAATACTCCCACCTCTGTCCTTCAAATGTCTCGAGGTCGCGT
CTGGGACTCGCTTTTGCAAAAATGGGTCAAATACGATTTGAAGGAGGAGG
CTGCGCGTGTCCTGGACGGCAAGGAGGAAGAGGACGAGGACGAGACAGCG
GCAACAACAACTGCAGCAGCAACAGCATCTACAGAAGAAAGTGGAGGGGA
GGGCAAGGACGAAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGG
GGAGGAGGAAGCACGGTCGCTCTACGAGATTTTGGGGGTGGATCGAACGG
CCTCGCCCGACACCATCAAAAAGGCCTACTACAGGGCCGCTCTGGCAGTG
CATCCAGATCGGGTAGTGGCCCACGACCGTTACACCCAAGGCCGTTTCCA
ACGGCTCTCGGAGGCCTACCAGATTCTCTCCACCCCCGATCTCAGGGCCG
CCTACGACAAGGAAGGAATGAAGGCCTGCCAGCACGCCACCTTCATCGAC
GGCGACGTCTTCTTTACCATGCTCTTTGGCTCCGAGCGCTTTCGGCCTTA
TCTGGGAAAACTTTTTTTAGCCTCCGCCATTGGCGTTCTGGGGAAGCTCA
GTGTCAGTGGCACCGAAGCCGACCTGTCGTTTGCAGACAAGGAGGACGAG
GCCCAGGAAGGGGGGAGGGAGGGGAGGAGGGAAAGAAGGATGGAGGAGTA
A
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Synonyms
Publications