NO24G02210, NO24G02210 (gene) Nannochloropsis oceanica

Overview
NameNO24G02210
Unique NameNO24G02210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3130
Alignment locationchr24:589163..592292 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:589163..592292 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G02210 vs. NCBI_GenBank
Match: EWM24431.1 (hypothetical protein Naga_101382g1 [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 8.100e-51
Identity = 193/368 (52.45%), Postives = 226/368 (61.41%), Query Frame = 0 
Query:   88 PIMYTSSGLLLLVPLLFNSTRTQAFVVWPRLPAGR--FVVP---SLSSSGESLRSSS--SALFAAAPRKRSKIRIGDEEMSFFFDDE--GEVGRGEEEAGWEGQTVLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKNDDPYYAFRDRRMFKMGEDERAYYD------RLNAYKPPS----SXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGSGTELFPSRTAGLSPAALEAISAFLVEGGEEPL--------SLFSSPMTVGGREGGKD--RFEKRVADXXXXXXXXXXXXXXXXXXXXXQLFSSEWYAAEMKRRNDEGKYSLALTYWERIHKEGMRPCPAAYTQVLRACRYTGEIMLALAL 427
            P++ T+  LLLL  L     R  +FV+   +P  R  F +P     S+    + SSS  + L+AAAPRKRSKI+IG+ EMSFFFD+E     G                XXXXXXXXXXXXXX                QAK DDPYY +RDRRMFKMGEDERAYYD       L AY   S     XXXXXXXXXXXXXXXXXXXXXXXXXX +VGSGTEL+P R+AG+SPA LEAIS+FLVEGGEEPL                 G  +GGK+  + ++RV                       +LFSSEWYA EM+RRND+GKYSLALTYWER+ +EG+RPCPAAYTQ LRACR+TGE+ LAL L
Sbjct:   66 PVVLTAP-LLLLSLLSSFCGRAYSFVLRESVPCNRPLFRLPHRGERSTLSPLIPSSSPPTLLYAAAPRKRSKIKIGEAEMSFFFDEEEXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRGRRLARSTAAEIMQAKIDDPYYQYRDRRMFKMGEDERAYYDSFVLTLSLFAYSSGSMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIVGSGTELYPGRSAGMSPAVLEAISSFLVEGGEEPLXXXXXXXXXXXXXXXRFGVGQGGKEEAKEKERVRWLSDEAAEGNARGAVEEREEGERLFSSEWYAGEMRRRNDQGKYSLALTYWERLLREGIRPCPAAYTQALRACRFTGEMELALEL 432
The following BLAST results are available for this feature:
BLAST of NO24G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24431.18.100e-5152.45hypothetical protein Naga_101382g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02210.1NO24G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G02210.2NO24G02210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672744gene_7446Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101382g1gene6050Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02210.1NO24G02210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G02210.2NO24G02210.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02210 ID=NO24G02210|Name=NO24G02210|organism=Nannochloropsis oceanica|type=gene|length=3130bp
TATAAGAAGGCTTGTTGCTTCTGTGGGGGAAAGGTGAGGACAGAGGGCAG
GATTGAGCACGTGAAGGCATGTGTTGCGGTTCCACCCCGCCCGCAGAGTG
CCCGTAGTAATCCTCTTTCCACCAGTGCCTCTGTAAGCATGTTTTAATCC
AATCGCATTAGACACGCCTTCCATCGATCATCCATCGTCACCCCGACTAG
TGTCGTTGGTGCTTTAATCCATCATCCTCCCCTACAAGGCGCCATTGCCC
GACGGGCCATCGTTTGCATGAACGAGTATCGTAATTGTCTCCCCCCGCCT
CGTCACAGCGCCTGGCTAGCCCTCCTAGTCTGGACCAAACCCCCCGCTGA
TAATCTTAAGTCTGGTTAACCCTCGACTCTCCCACAACAACGACAATTAT
CTGTCGCAAGGCCTTGCCTTTGTTCCTGCTTGCTCTCAAATCTTGCCTCT
CATCGCCTGCCTCTCCCTCACGACGAAGCAAAGCTAACGACTATGTCCAT
ACCACCATCTCACCGCCCCTACGACCCCACCACACATTTCCGATCCATAG
CGCCCAACGGCACTGCGACGACTAGCATGAAGGTCAGCAGCTGTGATGGC
TGCGGCTGCAACGACGACAATTTGTTGCGGCGACGGAGGAGACCGCGGGA
GCAGCCCAGACCAGAGGTTGCGCAGGGTAGCAGTAGCAGCAGCAGCAGCA
GCAGCTGCAGCAGCAGCACAGACGTACCCACAAGACCAAGGAGAAGGAGA
GCGCCTATTATGTACACAAGCAGCGGCCTCCTTCTTCTTGTTCCCCTCCT
TTTCAACAGCACCCGCACCCAAGCATTTGTTGTCTGGCCTCGCCTTCCTG
CCGGTCGTTTTGTCGTTCCCTCTTTGTCCTCCTCGGGAGAGTCTCTAAGG
TCATCATCGTCTGCCCTTTTTGCGGCTGCGCCACGAAAGCGGAGTAAAAT
TAGAATAGGCGACGAGGAGATGTCTTTTTTCTTCGACGACGAAGGAGAGG
TGGGGAGAGGAGAAGAGGAAGCAGGGTGGGAAGGACAGACGGTCCTGGAG
GACGAGGAGGAGGACGAGGACGAGGAGCAAGAAAGCCGTCGTCAGAGAAG
TCGGCGGAAGAGGTTTGCGACTGCCAACGCTGCGGAAGCCCAGCAGGCGA
AGAACGACGACCCGTACTACGCATTCAGGGACAGGAGGATGTTTAAGATG
GGGGAGGACGAGCGGGCGTACTACGACAGgtgagaaggatggagggaagt
atgaagggagggaaagaagggagaggggttatgcgcgccttaatttctct
ttcaaaagatcgccccaccgttaatccccttcctccttccctcctttccc
cctcccttagACTAAACGCCTACAAGCCCCCTTCGTCATCCTCCTCTTCC
CTCTCCACCTCCATCCCACCGTCCCTCCCTTCCTCCTCCCCGTCCTCCAC
CTCTTCCTCCTCCTCCATCGTCGTGGGCTCGGGCACCGAGCTATTTCCCA
GCCGCACCGCCGGCCTCTCTCCCGCTGCCCTTGAAGCCATTTCCGCCTTC
CTTGTGGAAGGTGGGGAAGAGCCCCTCTCTCTCTTCTCCTCTCCCATGAC
CGTGGGAGGAAGGGAAGGAGGGAAGGACCGATTCGAGAAGCGGGTGGCGG
ACCTGGCGGATGAGGCGGCCGAGGGCGGGAAGAGGGGCCAAGCGGAGGGA
CGGGAGGAAGGGGAGCAGCTGTTCAGCAGTGAGTGGTACGCCGCCGAGAT
GAAACGGAGAAACGACGAGGGGAAGTACTCCCTGGCACTCACGTACTGGG
AACGCATCCACAAAGAAGGAATGAGACCGTGCCCTGCGGCTTACACCCAG
GTCTTACGGGCGTGCCGTTACACGGGAGAGATAATGCTGGCGTTGGCGCT
GCTCCAGGAGATGGAGGACGACGGGGGGCGGATTTGTACGCGGgtaggga
gggagggagggaaataggaagaaagggagggagggtgggagggagggagg
gaactagaaagagagggaggaagagaaagaaaacacacgcatgcacgtct
gtatgaatttggtaagacttaatattctccctcctttccctctctccccc
tttccctccctccctccctgctccagGTGGGCTCGATTGGGTTGTCCGCC
TTCTCTCCCACTCCCGGCGATATCTGCAGACCCTCGACCTTTTCGAGACG
CTCAGCAACAAGGGCGTGCGCCTCCGTCCCTCCTCCTTTAATGTCCTCAT
GGAGGAGTTGGCGGCCATACCCAAGTGGAGGGAGGTTGTCAAGgtacgtg
aacaagtcctccctccctccctccctccctccctccctcccttttcaagg
tctgagccttgagaaaagcttgtcgtatcgcgcagacacaggtatacata
tatatatgtatatacatcgtcgcgtcttccgcttgcttgtcccttcctct
ttccctccctccccaccacccacccacccctccctccctccctgcctgct
tccctccctcagGTCCGTACTTTGATGAAGGCTTACCGCGTCGCGCCTGA
CGTGGACAGCTACTGCTGGATCATTACCGCCAATCTCGCCCTCGGCCGCA
CTTACGATGCGACGCGCTTGCTTGCAGAGATGGGAGACAGAGGGgtgagt
cctccctccctccgtccttccttccttcccttccgccctccttgccttcc
ttgcgttgttttggggcacttttcactttccaatttatattttctccctc
cctccctccctccctccctccctccttcagCTGGCCCCTTCGGAAAGCAT
GTTCGCCGCGTGGAGCTCCATGGCAGCAGTGACGGCGTCGGAGCGTAGGA
GGGCAACAGCGGCAGCAGCGTTAAATGTAGGCTCTCCCTCGGCAGTCGCG
GCCGGTCTGGTGGGGCAGGAGGAGGAAGAGCGGGAGGGAGAGGGGAGAGG
GAGGGGGAGGTTGGGGGTACAGGACCTGCGATTTTGCTGGCTTGAGTTGA
CCTGTCGAGATGATGGGTGAGAGAGGGTAAGGGAAGGAGGGAAGAAGAGA
AGAAGGGAAGAAGGGAGGGAGAAAGGAGGATGATTTTGATCCATAGTGTA
GAAAAGAAAAGAGGAGAAGAACGGGGGGGG
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protein sequence of NO24G02210.1

>NO24G02210.1-protein ID=NO24G02210.1-protein|Name=NO24G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MSIPPSHRPYDPTTHFRSIAPNGTATTSMKVSSCDGCGCNDDNLLRRRRR
PREQPRPEVAQGSSSSSSSSSCSSSTDVPTRPRRRRAPIMYTSSGLLLLV
PLLFNSTRTQAFVVWPRLPAGRFVVPSLSSSGESLRSSSSALFAAAPRKR
SKIRIGDEEMSFFFDDEGEVGRGEEEAGWEGQTVLEDEEEDEDEEQESRR
QRSRRKRFATANAAEAQQAKNDDPYYAFRDRRMFKMGEDERAYYDRLNAY
KPPSSSSSSLSTSIPPSLPSSSPSSTSSSSSIVVGSGTELFPSRTAGLSP
AALEAISAFLVEGGEEPLSLFSSPMTVGGREGGKDRFEKRVADLADEAAE
GGKRGQAEGREEGEQLFSSEWYAAEMKRRNDEGKYSLALTYWERIHKEGM
RPCPAAYTQVLRACRYTGEIMLALALLQEMEDDGGRICTRVGSIGLSAFS
PTPGDICRPSTFSRRSATRACASVPPPLMSSWRSWRPYPSGGRLSRSVL*
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protein sequence of NO24G02210.2

>NO24G02210.2-protein ID=NO24G02210.2-protein|Name=NO24G02210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MSIPPSHRPYDPTTHFRSIAPNGTATTSMKVSSCDGCGCNDDNLLRRRRR
PREQPRPEVAQGSSSSSSSSSCSSSTDVPTRPRRRRAPIMYTSSGLLLLV
PLLFNSTRTQAFVVWPRLPAGRFVVPSLSSSGESLRSSSSALFAAAPRKR
SKIRIGDEEMSFFFDDEGEVGRGEEEAGWEGQTVLEDEEEDEDEEQESRR
QRSRRKRFATANAAEAQQAKNDDPYYAFRDRRMFKMGEDERAYYDRLNAY
KPPSSSSSSLSTSIPPSLPSSSPSSTSSSSSIVVGSGTELFPSRTAGLSP
AALEAISAFLVEGGEEPLSLFSSPMTVGGREGGKDRFEKRVADLADEAAE
GGKRGQAEGREEGEQLFSSEWYAAEMKRRNDEGKYSLALTYWERIHKEGM
RPCPAAYTQVLRACRYTGEIMLALALLQEMEDDGGRICTRVGSIGLSAFS
PTPGDICRPSTFSRRSATRACASVPPPLMSSWRSWRPYPSGGRLSRSVL*
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Synonyms
Publications