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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:567095..569821 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G02130.1 vs.
Match: EWM24427.1 (putative e3 ubiquitin-protein ligase makorin-2, partial [Nannochloropsis gaditana]) HSP 1 Score: 157.9 bits (398), Expect = 1.100e-34 Identity = 77/111 (69.37%), Postives = 86/111 (77.48%), Query Frame = 0
Query: 586 RSC---PCCKQVSHFVIPHTRLVTDPLRKENLIQAYKDQMKQKRCRYFVYQRGNPEASLQSCPFGSSCFYAHLKEDGTPLTPPSLRTRMGEEGRVEVVHEVKLSDFL-EGR 693
R+C PC + PHT VTDP RK+NL++AYK QM +K CRYF YQ G+ EAS QSCPFG+SCFYAHLK DGTPLTPP LRTRMGEEGRVEVV EVKLSDFL +GR
Sbjct: 8 RTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGR 118
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G02130.1 ID=NO24G02130.1|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp ATGAGTGAGTTGAGCGAAGGGAGCGAGAGTGGGCTGCTGTCGCCAGCTGT CTTGGCAGCTGCCTTGACCGGCCGTCCCAGCGGCGGGGTGAGGAGGGGAG CAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGCCGAGGAGTAGCAGC ACGGGCTATCTGCTGGGGCTTGGATTTGTGGATGACGAGGGTCATGATCC CCTGACCATCAGCCAGGCGGGAAGGGGGAGGGAGGAGGAGGAGGAGGAGG GGAAGGGGAGGAGGGACAAGGGGGGTTGGGGAGGGGGAGAGGGAGTGGGA AGGGGCGGCAATCGGAGGGCTTCTAGACTTGTCACGGCCCTCTTGGTTTT TGAGAGGGGAGGAGGAAGGAGGGAGGGCGGGCGGGAGAGAGGAACGCCGA ACAGCAAGTGCAGTAGTACGGGAGCTACTTACAACACGGACGGGGAAGGG AGGTCTTTTCTTGACACACCTTCCTCTTCCTCCTCCGCTGCCTCTTCCGG CTCCTCCTCCTCCTCCTCCCTCTCCACCTCCTTCCATCCCCTTCCTGCCC CCAACTGTTTTCCCCCTCCCTCCTCCTCCCTCTCCTCTTCTTCCCTATCT TCCTCCCCCTCCTCCTCCTTCTCTGCCTCAGCCCAAGGGCTCCGTGACGA TCTCCATCAAAACCTGCTCAAGAGCATGGCTTCTTTTGCTATGGAAGGTT GCCATCCCTCCCTAACTCCCTCCCCCAGCCGCTCTCCCAGCCGGCCTGCC CACCACCAGCAGTACCAACAAAAACAACAGCAGTACCAACAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGTACACA CCCCTCTTCGTCCGGCGTCATCGTCTTCCTCTTCAGCTGCTGCACTCGCC GCTCTCGCTGCCCTTCCCTCTTCCTCCCTCCCTCCTTCTTCCCTTGGACG CTCCTCGTCCGCCGACAACCTCTATGCTCTGCAGCAGCAGTACGACAAAC ACCTCTATCGGCAGCAGCAGCCGCAGCAGCCGCAGCAGTACGACAAACAC CTCTATCAGCAGCAGCAGTGGGTGCAACAAAGACAGCAGCAGGAGCCGGG AGGAAGGGGAGGAGTGCCCACGAAATGCCTCGCCGACTGCTTGCCACTGG CAGGTGAGAGGGAGAGAAGGCGAGAGAGGGACAGAGAGAGGGACGAAGGG AGGGACGGAGGACAGGACGGGGAGGAGGCATATTATTATGGAGGGGTAGG GACGTTTGGCGCCGGAGGAGAACAGATAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGAGGGAGGGGGACGGGGGAGGGGGATGTTGTCGTCTTCTAAT TCGAACAGAGCGCGATGGGCGGAGGTGGTGGGGGGAGTCCCCTCCTCGTC CTCATCCTCGTCCTCGTCCTCGTTTCAAGGCCCGATGGGCAGGAGGGGCG GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGGCTTTTCCGGGGAAAGC GGTGGCAAAATCTGTCGTTTTTTTATCCAAGGGAATTCTGAACGAGGGAG CAGGCCCGGCAAGGGGGAGGAGGAGATGAGACTGGTGGTGGAGGAGGAGG AGAGGAGGAGTAGGGAGGCCGAGTGCATGATCTGTACAGACGCCATCACC GGTCGTTTCGGATTGCTGACGCACTGTGCTCACTCGTTTTGTTTGTCCTG CATCCGGACATGGCGACAGCAGCACACGGATGGGAGCCAAGACACGGCAA ACGTCCGTTCTTGTCCGTGCTGCAAGCAGGTCTCGCACTTCGTCATCCCA CACACCCGCCTCGTCACCGACCCCCTTCGCAAGGAGAATCTCATCCAGGC TTACAAGGACCAGATGAAACAGAAACGCTGCCGTTACTTCGTTTACCAAC GAGGTAATCCCGAAGCCTCCCTCCAATCATGTCCCTTCGGTTCCTCATGC TTTTATGCACACTTGAAGGAGGATGGCACGCCCCTAACGCCGCCGAGTCT GAGGACGAGAATGGGAGAGGAAGGGAGGGTGGAAGTAGTGCATGAGGTGA AGCTGTCGGATTTTTTGGAGGGAAGGAGGTAG back to topprotein sequence of NO24G02130.1 >NO24G02130.1-protein ID=NO24G02130.1-protein|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=694bp MSELSEGSESGLLSPAVLAAALTGRPSGGVRRGAGREGGREGGMMPRSSS TGYLLGLGFVDDEGHDPLTISQAGRGREEEEEEGKGRRDKGGWGGGEGVG RGGNRRASRLVTALLVFERGGGRREGGRERGTPNSKCSSTGATYNTDGEG RSFLDTPSSSSSAASSGSSSSSSLSTSFHPLPAPNCFPPPSSSLSSSSLS SSPSSSFSASAQGLRDDLHQNLLKSMASFAMEGCHPSLTPSPSRSPSRPA HHQQYQQKQQQYQQQQQQQQQQQQQEEEEEEVHTPLRPASSSSSSAAALA ALAALPSSSLPPSSLGRSSSADNLYALQQQYDKHLYRQQQPQQPQQYDKH LYQQQQWVQQRQQQEPGGRGGVPTKCLADCLPLAGERERRRERDRERDEG RDGGQDGEEAYYYGGVGTFGAGGEQIGREGGREGGREGGGRGRGMLSSSN SNRARWAEVVGGVPSSSSSSSSSSFQGPMGRRGGGREGGREGGLGFSGES GGKICRFFIQGNSERGSRPGKGEEEMRLVVEEEERRSREAECMICTDAIT GRFGLLTHCAHSFCLSCIRTWRQQHTDGSQDTANVRSCPCCKQVSHFVIP HTRLVTDPLRKENLIQAYKDQMKQKRCRYFVYQRGNPEASLQSCPFGSSC FYAHLKEDGTPLTPPSLRTRMGEEGRVEVVHEVKLSDFLEGRR* back to topmRNA from alignment at chr24:567095..569821+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G02130.1 ID=NO24G02130.1|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at chr24:567095..569821+ (Nannochloropsis oceanica) ATGAGTGAGTTGAGCGAAGGGAGCGAGAGTGGGCTGCTGTCGCCAGCTGT
CTTGGCAGCTGCCTTGACCGGCCGTCCCAGCGGCGGGGTGAGGAGGGGAG
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGCCGAGGAGTAGCAGC
ACGGGCTATCTGCTGGGGCTTGGATTTGTGGATGACGAGGGTCATGATCC
CCTGACCATCAGCCAGGCGGGAAGGGGGAGGGAGGAGGAGGAGGAGGAGG
GGAAGGGGAGGAGGGACAAGGGGGGTTGGGGAGGGGGAGAGGGAGTGGGA
AGGGGCGGCAATCGGAGGGGTGGGGTGTAGAGAGGGAGGAGGGAGGGAGG
GGAGAGGGAGGGGGAGAGGGAGGGGTTTTGGGAGGGAGCCATGCATTGAT
GAAGTCGTTCTCTTCGTCGCAGCTTCTAGACTTGTCACGGCCCTCTTGGT
TTTTGAGAGGGGAGGAGGAAGGAGGGAGGGCGGGCGGGAGAGAGGAACGC
CGAACAGCAAGTGCAGTAGTACGGGAGCTACTTACAACACGGACGGGGAA
GGGAGGTCTTTTCTTGACACACCTTCCTCTTCCTCCTCCGCTGCCTCTTC
CGGCTCCTCCTCCTCCTCCTCCCTCTCCACCTCCTTCCATCCCCTTCCTG
CCCCCAACTGTTTTCCCCCTCCCTCCTCCTCCCTCTCCTCTTCTTCCCTA
TCTTCCTCCCCCTCCTCCTCCTTCTCTGCCTCAGCCCAAGGGCTCCGTGA
CGATCTCCATCAAAACCTGCTCAAGAGCATGGCTTCTTTTGCTATGGAAG
GTTGCCATCCCTCCCTAACTCCCTCCCCCAGCCGCTCTCCCAGCCGGCCT
GCCCACCACCAGCAGTACCAACAAAAACAACAGCAGTACCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGTAC
ACACCCCTCTTCGTCCGGCGTCATCGTCTTCCTCTTCAGCTGCTGCACTC
GCCGCTCTCGCTGCCCTTCCCTCTTCCTCCCTCCCTCCTTCTTCCCTTGG
ACGCTCCTCGTCCGCCGACAACCTCTATGCTCTGCAGCAGCAGTACGACA
AACACCTCTATCGGCAGCAGCAGCCGCAGCAGCCGCAGCAGTACGACAAA
CACCTCTATCAGCAGCAGCAGTGGGTGCAACAAAGACAGCAGCAGGAGCC
GGGAGGAAGGGGAGGAGTGCCCACGAAATGCCTCGCCGACTGCTTGCCAC
TGGCAGGTGAGAGGGAGAGAAGGCGAGAGAGGGACAGAGAGAGGGACGAA
GGGAGGGACGGAGGACAGGACGGGGAGGAGGCATATTATTATGGAGGGGT
AGGGACGTTTGGCGCCGGAGGAGAACAGATAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGGACGGGGGAGGGGGATGTTGTCGTCTTCT
AATTCGAACAGAGCGCGATGGGCGGAGGTGGTGGGGGGAGTCCCCTCCTC
GTCCTCATCCTCGTCCTCGTCCTCGTTTCAAGGCCCGATGGGCAGGAGGG
GCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGGCTTTTCCGGGGAA
AGCGGTGGCAAAATCTGTCGTTTTTTTATCCAAGGGAATTGTGCGCATGG
CGATCGCTGCCACAATTCTCATGACCCGTCCGCCCTCCCTCCTTCAGTTC
CTCCTTTCCTGACTCCCCCCGTATCGTCTGCGCAGCTGAACGAGGGAGCA
GGCCCGGCAAGGGGGAGGAGGAGATGAGACTGGTGGTGGAGGAGGAGGAG
AGGAGGAGTAGGGAGGCCGAGTGCATGATCTGTACAGACGGTAGGCAGGA
AGGAAGGGTGGGAGGAAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGAAA
TTGGAAGGAGACAGTCGGATAAGCCTGGATTCTTTTTAACCCATCATCCT
CCCCCCTTCCCTCCTTCCAACCCCTCCTTCCCTCCCCTCCTCCACCCCTC
CTTCCTCCCCCAGCCATCACCGGTCGTTTCGGATTGCTGACGCACTGTGC
TCACTCGTTTTGTTTGTCCTGCATCCGGACATGGCGACAGCAGCACACGG
ATGGGAGGTAAGCAGGGAGAGAGGGAAGGAGGGAAGAATTAGACAATGGA
GGGGTGGGGGGGAGGCTACTGCCAAACTCAATTTCATTACTGCTTTCCTT
CCCTCCCCCCGTCTCCCCCTCCCTCCCTCCCTCCCTCCCTTGCAGCCAAG
ACACGGCAAACGTCCGTTCTTGTCCGTGCTGCAAGCAGGTCTCGCACTTC
GTCATCCCACACACCCGCCTCGTCACCGACCCCCTTCGCAAGGTGGGGAG
GGAAGGAGGGACCGAGGGAGGGAAGGGAACGGACTGTCCGATGCTTCTGT
CTCTTATGTCATGCCAGACTCCACACCCTTCCCCCCTCCCCCCTCCCTCC
CCTCCTCCCTCCCCTCCTCCTTCCCCAGGAGAATCTCATCCAGGCTTACA
AGGACCAGATGAAACAGAAACGCTGCCGTTACTTCGTTTACCAACGAGGT
AATCCCGAAGCCTCCCTCCAATCATGTCCCTTCGGTTCCTCATGCTTTTA
TGCACACTTGAAGGAGGATGGCACGCCCCTAACGCCGCCGAGTCTGAGGA
CGAGAATGGGAGAGGAAGGGAGGGTGGAAGTAGTGCATGAGGTGAAGCTG
TCGGATTTTTTGGAGGGAAGGAGGTAG back to topCoding sequence (CDS) from alignment at chr24:567095..569821+ >NO24G02130.1 ID=NO24G02130.1|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at chr24:567095..569821+ (Nannochloropsis oceanica) ATGAGTGAGTTGAGCGAAGGGAGCGAGAGTGGGCTGCTGTCGCCAGCTGT CTTGGCAGCTGCCTTGACCGGCCGTCCCAGCGGCGGGGTGAGGAGGGGAG CAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGCCGAGGAGTAGCAGC ACGGGCTATCTGCTGGGGCTTGGATTTGTGGATGACGAGGGTCATGATCC CCTGACCATCAGCCAGGCGGGAAGGGGGAGGGAGGAGGAGGAGGAGGAGG GGAAGGGGAGGAGGGACAAGGGGGGTTGGGGAGGGGGAGAGGGAGTGGGA AGGGGCGGCAATCGGAGGGCTTCTAGACTTGTCACGGCCCTCTTGGTTTT TGAGAGGGGAGGAGGAAGGAGGGAGGGCGGGCGGGAGAGAGGAACGCCGA ACAGCAAGTGCAGTAGTACGGGAGCTACTTACAACACGGACGGGGAAGGG AGGTCTTTTCTTGACACACCTTCCTCTTCCTCCTCCGCTGCCTCTTCCGG CTCCTCCTCCTCCTCCTCCCTCTCCACCTCCTTCCATCCCCTTCCTGCCC CCAACTGTTTTCCCCCTCCCTCCTCCTCCCTCTCCTCTTCTTCCCTATCT TCCTCCCCCTCCTCCTCCTTCTCTGCCTCAGCCCAAGGGCTCCGTGACGA TCTCCATCAAAACCTGCTCAAGAGCATGGCTTCTTTTGCTATGGAAGGTT GCCATCCCTCCCTAACTCCCTCCCCCAGCCGCTCTCCCAGCCGGCCTGCC CACCACCAGCAGTACCAACAAAAACAACAGCAGTACCAACAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGTACACA CCCCTCTTCGTCCGGCGTCATCGTCTTCCTCTTCAGCTGCTGCACTCGCC GCTCTCGCTGCCCTTCCCTCTTCCTCCCTCCCTCCTTCTTCCCTTGGACG CTCCTCGTCCGCCGACAACCTCTATGCTCTGCAGCAGCAGTACGACAAAC ACCTCTATCGGCAGCAGCAGCCGCAGCAGCCGCAGCAGTACGACAAACAC CTCTATCAGCAGCAGCAGTGGGTGCAACAAAGACAGCAGCAGGAGCCGGG AGGAAGGGGAGGAGTGCCCACGAAATGCCTCGCCGACTGCTTGCCACTGG CAGGTGAGAGGGAGAGAAGGCGAGAGAGGGACAGAGAGAGGGACGAAGGG AGGGACGGAGGACAGGACGGGGAGGAGGCATATTATTATGGAGGGGTAGG GACGTTTGGCGCCGGAGGAGAACAGATAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGAGGGAGGGGGACGGGGGAGGGGGATGTTGTCGTCTTCTAAT TCGAACAGAGCGCGATGGGCGGAGGTGGTGGGGGGAGTCCCCTCCTCGTC CTCATCCTCGTCCTCGTCCTCGTTTCAAGGCCCGATGGGCAGGAGGGGCG GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGGCTTTTCCGGGGAAAGC GGTGGCAAAATCTGTCGTTTTTTTATCCAAGGGAATTCTGAACGAGGGAG CAGGCCCGGCAAGGGGGAGGAGGAGATGAGACTGGTGGTGGAGGAGGAGG AGAGGAGGAGTAGGGAGGCCGAGTGCATGATCTGTACAGACGCCATCACC GGTCGTTTCGGATTGCTGACGCACTGTGCTCACTCGTTTTGTTTGTCCTG CATCCGGACATGGCGACAGCAGCACACGGATGGGAGCCAAGACACGGCAA ACGTCCGTTCTTGTCCGTGCTGCAAGCAGGTCTCGCACTTCGTCATCCCA CACACCCGCCTCGTCACCGACCCCCTTCGCAAGGAGAATCTCATCCAGGC TTACAAGGACCAGATGAAACAGAAACGCTGCCGTTACTTCGTTTACCAAC GAGGTAATCCCGAAGCCTCCCTCCAATCATGTCCCTTCGGTTCCTCATGC TTTTATGCACACTTGAAGGAGGATGGCACGCCCCTAACGCCGCCGAGTCT GAGGACGAGAATGGGAGAGGAAGGGAGGGTGGAAGTAGTGCATGAGGTGA AGCTGTCGGATTTTTTGGAGGGAAGGAGGTAG back to top
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