NO24G02100.1, NO24G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02100.1
Unique NameNO24G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2528
Alignment locationchr24:559640..562287 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:559640..562287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02100NO24G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02100.1NO24G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02100.1.cds1NO24G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02100.1.cds2NO24G02100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02100.1 ID=NO24G02100.1|Name=NO24G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp
AGAAGGAGAGATGAGGTGCGCCATGTCGGACCTCAACTGCCAGGGCGCCG
CTGGTTTACGTTTCCCCTTGGAGAAAAAAAAGCGATACGGGCATTTGAAT
TTACACAGACGCAGGGTTCATACATTCACGCTCAACACACACGTTTGGAT
TCAAAATAATAGACATTATCCATACAACTTTTCATTGATAAGCCGACGCA
GCTTGCGTGGTAAATAATATCAGGAGGGCATGAAGCTCACTGTGGAATGG
TGGGCTGCCCTTTGATGATGTTTTGAAGACCAAACTGCGTCTTAGCAACC
AAATAGTTCCGATTGTTTGCTCGGTTTCTTGATGATGTATAGCTTGCTGA
GATTTCGTGCTTGGCTTTTGATTCCCTTCCGCGGCTGCGGAAGCTTGTAT
ATCTCCAGCACCACCTGTAGAACAGGTGCGTGCTCACATATTTGGATCAA
TATCAAGACCTTTGTAGGAAAGTTGTTGCTACTCAAGGAAGTCCTTCGTC
ATCTTCGTCAATCTTGATTAAGCGGATCTGTGGTGGCGAAGACGTCGAAA
GCAGAATAGAGTAATTACGGCCCAACAGTGACTACCTGGAGCAATGTAAT
CCAATCCCTTTCCTAGAGAATAACAGATGCAGATCCCCTTATTTTGTCCT
TGTGATAAATCTCTTGCTTTTACCTATGTATCACTTTCACTTCCTCGCAG
TCTTCTTGCTCTAACGAACCATCTACAGCTCTGTGGTGGCATTGCGGTGT
GGCTTGCCCAGTCTACGACCACGGCCGCTTTGACCCAATGGGCTTACATG
AAACCTTCCGTCGTGCACCACAGTTTTCTATGTAATATGAAAACTGTAGG
TGTGTCGTCTTGTGTGTCAAGCTTTTCTTCTTTGCTGATGACGTGGCGAG
CCTGTATGAGGGAGGAAAATTGTCGAATGACATCGTATTAAAGCACTCAA
CTTAAGCGAGACAAGAAGCACACCATGGCACACTCTTTTATGCGCCATTT
GTACTTTTTCAACATTAGAGGATGAAGAGAGGGTGAGGCAAAGAGAAATA
GATGGAGATAGATATAGATCGAAAGAGGTAGAAGTAGTGACGGAGAAAGA
AAAAGAGAGAAAGAGAAAGGAAAAGAGGGAGAGAGTGAGGGAGAGAGATG
GAGGAGAAAGGAAGACAGAGTGGGAGAGAGAGAAAGAGAAAGAGAAGAGA
AAGATGGAGGGGGCAAGAAAGAGAAAGAAAAAGAAATAGAATCGAGAGAG
TGAGAGAGAGAGTGTGAGGGAGAGAGAACACAGGTTGTGGATCCCGCGGC
ACGTAAAAGTGATGGATCATAGTCGTCATCGCCTTTCTTTCCATGTCCTC
CTTCCCAGAAAGAAACCCACTTAGTTTACAACCGATGCGCATTACACACA
GGAATAGCTAGACCTTGCGCGTGATCTCGTCGTAAAGGGCACTTCTGCAT
CCACCTTCGAGGTCGCCGCGCCGAGCAATATCCCTGGCCAATCAGTCGCA
CAAGGTAACCAAGTAAAACTTTCCCTAACCCTCCTCCTACAATGGCCGTT
CGCATCCGTGGTGGGGGCGCTCGTGTGCAACAAGGCAGGGATAGAAGAAA
GCGCCCGTGTCCCGCAGGCATCGCTTGTCGCTTTCAGCATGAGATGCAGC
ATATAATGGAATTCACGCACGACAGGTCTACAATCGTCGGGGGAGGGGGC
AGGCGCGGGAGAGGACGAGGACGATTGGGAAGAGAGGGTAGAGGGGGAGG
AGGACGAGAAGGAGGAAGTGGAAGAGGAGGAGGGAGGACGGCATGGCATG
GGCAAGGACATCGGTTGGGTGGTGGAATGAATGGAGCAGCAGAAGGAGAG
GAAAACCCGAAGAGAAAGGGGGTGGAGGGAGGGCGAGAGGGACGAGTGGA
GGGAAGAAGACGAGGGTTTTTGGAGGCCCTGGGCAGGCCTTTGGGGAAGG
AGGGAAGGAGGAGGAAGAGGAGGAGGAGATACAGGTGGTTGAAAGGCGGG
AAGGAGGAAGTCGAGGGGGAGAAAGGGGGGCAAGGGCAATGGAGGAGAAT
GTCGGACCTGAATTGATTGACGATGACAGCGAGGAGGAGGAGGAGGAGGA
GGAGAGGGAGGAGGGAATCGAGGTGATCGAGGGCAAGAAAGATGGAGGAA
ATGAGGGAGGATTGAGTTGTCCGATTTGTGGGGTAGAAGTTGGAGGGTGG
GATGTGGGTATGGACAAACATTTGCGAGAGAGGCATGAGATGACTTAGGG
AGGGAGGGAGGGGGGAGGGAGGGAGGGAAGGAAGGCGTTGTTTGTTTGTA
AGATGCCAGTAGATTTGTACAGGAAGGGAGGGACGCGAAGGAGGTAATGT
AGGAGGGAAGAGGTAGATAAAGGGGAGGAGAAGCCGGCAAGACCATCATT
CACACCCTCGACCCCCCTTTCCTGGCTGGACCTGCATGATACTTAGCGTA
CGTATTAAGTCTGTTCCAAAGCTGAAAGCAACAATTGCAAACACACTGGC
AGCAGCAGCAGCAGCAATGACAGTGGCG
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protein sequence of NO24G02100.1

>NO24G02100.1-protein ID=NO24G02100.1-protein|Name=NO24G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MAVRIRGGGARVQQGRDRRKRPCPAGIACRFQHEMQHIMEFTHDRSTIVG
GGGRRGRGRGRLGREGRGGGGREGGSGRGGGRTAWHGQGHRLGGGMNGAA
EGEENPKRKGVEGGREGRVEGRRRGFLEALGRPLGKEGRRRKRRRRYRWL
KGGKEEVEGEKGGQGQWRRMSDLN*
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mRNA from alignment at chr24:559640..562287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02100.1 ID=NO24G02100.1|Name=NO24G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2648bp|location=Sequence derived from alignment at chr24:559640..562287+ (Nannochloropsis oceanica)
AGAAGGAGAGATGAGGTGCGCCATGTCGGACCTCAACTGCCAGGGCGCCG
CTGGTTTACGTTTCCCCTTGGAGAAAAAAAAGCGATACGGGCATTTGAAT
TTACACAGACGCAGGGTTCATACATTCACGCTCAACACACACGTTTGGAT
TCAAAATAATAGACATTATCCATACAACTTTTCATTGATAAGCCGACGCA
GCTTGCGTGGTAAATAATATCAGGAGGGCATGAAGCTCACTGTGGAATGG
TGGGCTGCCCTTTGATGATGTTTTGAAGACCAAACTGCGTCTTAGCAACC
AAATAGTTCCGATTGTTTGCTCGGTTTCTTGATGATGTATAGCTTGCTGA
GATTTCGTGCTTGGCTTTTGATTCCCTTCCGCGGCTGCGGAAGCTTGTAT
ATCTCCAGCACCACCTGTAGAACAGGTGCGTGCTCACATATTTGGATCAA
TATCAAGACCTTTGTAGGAAAGTTGTTGCTACTCAAGGAAGTCCTTCGTC
ATCTTCGTCAATCTTGATTAAGCGGATCTGTGGTGGCGAAGACGTCGAAA
GCAGAATAGAGTAATTACGGCCCAACAGTGACTACCTGGAGCAATGTAAT
CCAATCCCTTTCCTAGAGAATAACAGATGCAGATCCCCTTATTTTGTCCT
TGTGATAAATCTCTTGCTTTTACCTATGTATCACTTTCACTTCCTCGCAG
TCTTCTTGCTCTAACGAACCATCTACAGCTCTGTGGTGGCATTGCGGTGT
GGCTTGCCCAGTCTACGACCACGGCCGCTTTGACCCAATGGGCTTACATG
AAACCTTCCGTCGTGCACCACAGTTTTCTATGTAATATGAAAACTGTAGG
TGTGTCGTCTTGTGTGTCAAGCTTTTCTTCTTTGCTGATGACGTGGCGAG
CCTGTATGAGGGAGGAAAATTGTCGAATGACATCGTATTAAAGCACTCAA
CTTAAGCGAGACAAGAAGCACACCATGGCACACTCTTTTATGCGCCATTT
GTACTTTTTCAACATTAGAGGATGAAGAGAGGGTGAGGCAAAGAGAAATA
GATGGAGATAGATATAGATCGAAAGAGGTAGAAGTAGTGACGGAGAAAGA
AAAAGAGAGAAAGAGAAAGGAAAAGAGGGAGAGAGTGAGGGAGAGAGATG
GAGGAGAAAGGAAGACAGAGTGGGAGAGAGAGAAAGAGAAAGAGAAGAGA
AAGATGGAGGGGGCAAGAAAGAGAAAGAAAAAGAAATAGAATCGAGAGAG
TGAGAGAGAGAGTGTGAGGGAGAGAGAACACAGGTTGTGGATCCCGCGGC
ACGTAAAAGTGATGGATCATAGTCGTCATCGCCTTTCTTTCCATGTCCTC
CTTCCCAGAAAGAAACCCACTTAGTTTACAACCGATGCGCATTACACACA
GGAATAGCTAGACCTTGCGCGTGATCTCGTCGTAAAGGGCACTTCTGCAT
CCACCTTCGAGGTCGCCGCGCCGAGCAATATCCCTGGCCAATCAGTCGCA
CAAGGTAACCAAGTAAAACTTTCCCTAACCCTCCTCCTACAATGGCCGTT
CGCATCCGTGGTGGGGGCGCTCGTGTGCAACAAGGCAGGGATAGAAGAAA
GCGCCCGTGTCCCGCAGGCATCGCTTGTCGCTTTCAGCATGAGATGCAGG
TAAGGCTGGAGTTGTGGTCTACTCCATTCCTTCCCTCTTTTCCCTACCCA
TCTTTCCCTTGGCTTCTTATTCACAGCACTCACAAACCGCGGAACTCATT
CGCTTTCCCTCATCCACAGCATATAATGGAATTCACGCACGACAGGTCTA
CAATCGTCGGGGGAGGGGGCAGGCGCGGGAGAGGACGAGGACGATTGGGA
AGAGAGGGTAGAGGGGGAGGAGGACGAGAAGGAGGAAGTGGAAGAGGAGG
AGGGAGGACGGCATGGCATGGGCAAGGACATCGGTTGGGTGGTGGAATGA
ATGGAGCAGCAGAAGGAGAGGAAAACCCGAAGAGAAAGGGGGTGGAGGGA
GGGCGAGAGGGACGAGTGGAGGGAAGAAGACGAGGGTTTTTGGAGGCCCT
GGGCAGGCCTTTGGGGAAGGAGGGAAGGAGGAGGAAGAGGAGGAGGAGAT
ACAGGTGGTTGAAAGGCGGGAAGGAGGAAGTCGAGGGGGAGAAAGGGGGG
CAAGGGCAATGGAGGAGAATGTCGGACCTGAATTGATTGACGATGACAGC
GAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGAGGGAATCGAGGTGATCGA
GGGCAAGAAAGATGGAGGAAATGAGGGAGGATTGAGTTGTCCGATTTGTG
GGGTAGAAGTTGGAGGGTGGGATGTGGGTATGGACAAACATTTGCGAGAG
AGGCATGAGATGACTTAGGGAGGGAGGGAGGGGGGAGGGAGGGAGGGAAG
GAAGGCGTTGTTTGTTTGTAAGATGCCAGTAGATTTGTACAGGAAGGGAG
GGACGCGAAGGAGGTAATGTAGGAGGGAAGAGGTAGATAAAGGGGAGGAG
AAGCCGGCAAGACCATCATTCACACCCTCGACCCCCCTTTCCTGGCTGGA
CCTGCATGATACTTAGCGTACGTATTAAGTCTGTTCCAAAGCTGAAAGCA
ACAATTGCAAACACACTGGCAGCAGCAGCAGCAGCAATGACAGTGGCG
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Coding sequence (CDS) from alignment at chr24:559640..562287+

>NO24G02100.1 ID=NO24G02100.1|Name=NO24G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr24:559640..562287+ (Nannochloropsis oceanica)
ATGGCCGTTCGCATCCGTGGTGGGGGCGCTCGTGTGCAACAAGGCAGGGA
TAGAAGAAAGCGCCCGTGTCCCGCAGGCATCGCTTGTCGCTTTCAGCATG
AGATGCAGCATATAATGGAATTCACGCACGACAGGTCTACAATCGTCGGG
GGAGGGGGCAGGCGCGGGAGAGGACGAGGACGATTGGGAAGAGAGGGTAG
AGGGGGAGGAGGACGAGAAGGAGGAAGTGGAAGAGGAGGAGGGAGGACGG
CATGGCATGGGCAAGGACATCGGTTGGGTGGTGGAATGAATGGAGCAGCA
GAAGGAGAGGAAAACCCGAAGAGAAAGGGGGTGGAGGGAGGGCGAGAGGG
ACGAGTGGAGGGAAGAAGACGAGGGTTTTTGGAGGCCCTGGGCAGGCCTT
TGGGGAAGGAGGGAAGGAGGAGGAAGAGGAGGAGGAGATACAGGTGGTTG
AAAGGCGGGAAGGAGGAAGTCGAGGGGGAGAAAGGGGGGCAAGGGCAATG
GAGGAGAATGTCGGACCTGAATTGA
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Synonyms
Publications