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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:499436..503014 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01880.1 vs.
Match: GBG25769.1 (Ubiquitin carboxyl-terminal hydrolase MINDY-1 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 149.8 bits (377), Expect = 2.300e-32 Identity = 117/412 (28.40%), Postives = 186/412 (45.15%), Query Frame = 0
Query: 17 VFPTKRIPFGPHGRLVPILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKLPSLRSSSSISSSSSSSSSSFSSSTSFSLPVSSGATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLF-------RPAVEGGGAGGGGGGGVEGRLGGCDHGHAAVGTAMARSLREQEEAEARLIERVMAASLRDVSGQGR 422
V KR+ F R V ++LQNE GPCPL+A+ N+LLL+ L + + + +++ +AN ++E G AD+++ + + E++ +LP L++G+DVNVRF V+ FE +++FD LG+ LFHGWVV ++D + + + N++YNQ M++++A +E G +G+ +S + + +L+ + ++E FL T Q T L+ LH TV+E E+C F +NHFS L K G LY LVTD+GY++ + W L+ V G ELV F P G GG ++ +AR L QE A +R + A R + GR
Sbjct: 53 VHEVKRMAF--LNREVSVVLQNENGPCPLIALVNVLLLRGTLKMHKDRRSIGSENLIAMVANLLVEKN----------------------------GSGADENMQHTMQEMMDILPTLQYGLDVNVRFGGVSLFEFDNHVAIFDLLGVNLFHGWVVDQQDTE--------VYDAIANLSYNQAMDRIIAAREAG------------SDGQTSSEELVQTLQEA--------------------------------EIIERFLSETASQFTFTALTQLHETVKEREVCVFFRNNHFSTLFKIEGHLYALVTDQGYRDNGMIGWELLNAVDGDTELVSPSFGQPSEYVHPNDLGQTLEDQGGSRID------------ADEELARQLAAQERAASRQNQGSPRAQQRAQARNGR 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G01880.1 ID=NO24G01880.1|Name=NO24G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=3441bp TCCCTCCCTCTCGACTCCCTCTCCTCGGCTCGTTCGCCCACCCATACGCC TTCATCTTTCCGACCCTAATTTTATACAAATATATATAATAAATGACACA TACTCGTATAGATATTCCTTTCCTCCCTCCCCTCCACTCTAAAAAGGCGT CATTCCTCCTCCCCTCTCACCCCCTCCTCCCATCCCTCCACCTCCTATCC CTGCAACCCCTATCCCTCCCCCCTACCCATCCCTCCTCCTCCTCCTAATC CTCCTCCTAGAGGCGCTGCTGCTGTTCCTCCTCCCGCTCCCCCTCCTCCT CCTCCTCCTCCCCAACCAAAAATAGCAGGCAGGCTCATCTGTATTAATCG TTTCAAAATCGCCTTCCTTCCCCTCGTCACAGTCACCTCGAACATCTCCT CCGCCTCCATCGAGAAATGGAAGATCCAATCCCCCGTCGATGTGGGGATG ATCTTTATCTCCCTCGGTGGCATCGGCATCCCTCCCCTCCCCCTCCCCCT CCGCCCCCTGAACGACGGAATATGAGCTCTTCTGTCGGGCCACTGTCAAG CATAAGCCCGATCTCCTCTGCCGTCAGGGAGAGCCTTTTTGTCCCCTTCC ATTCATACGCACCACTTGGGCCCTTCTTCGTAAATTCTACGAGCAACCGC GCATTGTTCTTGTAGTTAAGAGTGCCTCCTCCTCCGCCTCCTCCTCCGCC TCCTCCTCCGCCTCCTCCTCCAGGTGGAGAGCCACCACCACCACCGCCCA CCCCCCCCGGGTTGTTGGTAGGTGGTCAGGCGAAACTTGAGCATGCAGTT CTCGCCAAAGACGACGAAGTCAGGGTCACTCCTCTGATTGGTAGGGAAGG CATTATTGCCCATATCGGAGAAGGATGATGTGGAAAAGGTTACGGAGGAG GGGGAGGAAGAGGAGGAGGGGAAGGAGGAGGAGGAGGAAAAGGAGATACC GCGTAGAGTAGAGGAATAGGTACAAGGGAGGGAGGAAAGGAAGCAGGTGG CGCTGCTGTTCTTGTGGGTACTCGTACAGGGCTTCCGTTGCATCAGTACT ATGTTTCGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGGGCTGCAGGAAG CCGGAAGAATCGAGAATTTACAGTCTGGGCGCTGCTGCTGCTCCTGGTGC CGCTACGGAGAAGAAGCATGGTGCTGCCTGTAACAATTTGTGGTGATCGT AAGGTAGTGGGGAAAAAGCGTGTGACCGCCGTGACGCTGCATCGCTGAAT CGTTTGGCCGGGACACTGAGACGTGCTGTGATAGCGTGCGGCAGCATGCT TCTGCCTTTGTCCTAACTACCATGTATAGATTCAGTAATACTGCACCCCT GAGCTGGCCGACACTGCATTTTAATTAAATAGCTTCGCTTTGCAGGTGGG GAGGTTGTCGTCGCTTCTCCCAATGGGATCAGTCACGACAAGTTCTATAA TTTCACCCTAGACGACACTGTCCAAAAAGTCACCAAGCGACTTGCAGATC AAAAAAGGATAGGACTGCTAGTAAGTCTGGTGCTTGCTTGCTTGGCTGTG TATGGCATGATTATTATTATCATTATGAAATTACTTTTTTCGATTTTTCT GTAAGATCGATAGCGACCCTTGTTAAGCCTCTTGACATGTCAAAATATTT CATATTTCATGGCGTCGTCTAAACCCATTGACATGTCTGAAAAGGAAGTG AGGATCGTTGGGACAGGGCTCTAAATTCAATCAACCTCTCCTCGTTGCCT TGCCTCATCATCAGGGGGGATTCCTTGTCATCATAATTGCATCTACACGT ACCCACGTACAATTACAGGACCAAATGTTGTTGACCCCTCGCTCCGCCGC CTCCGCCTCCGCCTCCCCTCTCGTCTTCCCCACAAAACGTATTCCCTTTG GTCCCCACGGCCGGCTTGTCCCTATCCTCTTGCAAAACGAGGCCGGGCCG TGCCCATTGCTTGCCGTGGCCAACATTCTCCTCCTTCAACGGCAGCTGGA CGTGGACCCGGAGTACACAAAGGTGTCTCTGATTGACATACTGACGGGCA TTGCAAATCGTGTCTTGGAGGCTACCTCGACCGCTGCGAAAGCGGCCAGT ACTGCTGATGCCGTTGCCTTTGAGGCTCCTGGGGGTGGCGACGAGATTGC AAAGGCTGTCGGGGGACATGCCGATAAGCATGTTGCTTATCAAGTCGACG AGGTCATTCACCTTCTTCCTCGCTTGCGACATGGTATGGACGTAAACGTC CGTTTCACTGACGTAGCTGCGTTCGAGCCAACAGTGGAGCTTTCTGTCTT CGATGCCCTAGGGATCCGACTATTCCATGGGTGGGTGGTAGGGGAAGAGG ACGAGGACGAGGAAGGGAGGGAGGGAGGGGTCTTGGCGCAGGTGGTGGGG AACATGACTTACAACCAGGTCATGGAGAAGTTGGTGGCAATGAAGGAGGG AGGGAGGGAGAGAAGGAGGCAGAAGGGCGAGATGGATCGGGGTGAGGGCA AAAGGGCATCAAGTCAGAAACTACCTTCCCTCCGCTCCTCCTCCTCCATC TCCTCCTCCTCCTCCAGTTCCTCCTCCTCCTTCTCCTCCAGCACCTCATT CTCCCTCCCTGTATCCTCTGGGGCCACTGAATCTCTCTCCCTCCTCGAGG ACTTCCTCCTTCGCACCCCCGGGCAGCTCACCCTCCGGGGACTCTCCCTC CTCCACTCTACCGTCAGAGAAAACGAGCTCTGCGGCCTCTTTCATCACAA CCACTTCTCGGTCCTGTTGAAGAAAGGGGGTAGGTTGTACTTATTGGTCA CAGATGAAGGGTACAAAGAGGAGGCTCATGTGGTGTGGGCGAGGTTGGAC GGCGTCTCTGGCGCCGGAGAGCTCGTAGACGGTTTGTTCAGACCGGCGGT TGAAGGGGGAGGGGCAGGAGGAGGAGGAGGAGGGGGTGTAGAAGGTAGGC TTGGTGGTTGTGATCATGGCCATGCTGCCGTTGGGACGGCGATGGCCAGA TCTCTGAGGGAGCAGGAGGAGGCAGAGGCGCGGTTGATAGAACGAGTCAT GGCGGCCTCCTTGCGCGATGTCAGTGGACAAGGCAGGGAAGTAGACGAAA CAGGGGGGATAAGAGAGGAGTTTAAGGAGGAAATGAGGAGGAACGACGAG GAATTTTGCCTTGACCGGGTGTATTCGGAAGCGGAGCTGGCGGAGATGCG AGAGCTTGAAAGAGATTTTCAATATGCCAGGCTTCAGGAAAAAGAAAGTA GGCACGGGCCGAGAGGAAGGACAGAAGGAAGTCAGCAACTAGTTGGAAGA CGGGTGGCGAGTCGGGGCAGGGGGATGGGGGAGAGGGGTGGGAAAAAGGG AAAAAAAGACACTTGTACACTGCAATAACATTCAAAAGTCCACACCACGA TTAACAATGAAGTGAATAAAAAGTATCAAAGTTCTTTTGGG back to topprotein sequence of NO24G01880.1 >NO24G01880.1-protein ID=NO24G01880.1-protein|Name=NO24G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp MLLTPRSAASASASPLVFPTKRIPFGPHGRLVPILLQNEAGPCPLLAVAN ILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFE APGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAF EPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVM EKLVAMKEGGRERRRQKGEMDRGEGKRASSQKLPSLRSSSSISSSSSSSS SSFSSSTSFSLPVSSGATESLSLLEDFLLRTPGQLTLRGLSLLHSTVREN ELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGEL VDGLFRPAVEGGGAGGGGGGGVEGRLGGCDHGHAAVGTAMARSLREQEEA EARLIERVMAASLRDVSGQGREVDETGGIREEFKEEMRRNDEEFCLDRVY SEAELAEMRELERDFQYARLQEKESRHGPRGRTEGSQQLVGRRVASRGRG MGERGGKKGKKDTCTLQ* back to topmRNA from alignment at chr24:499436..503014- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G01880.1 ID=NO24G01880.1|Name=NO24G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=3579bp|location=Sequence derived from alignment at chr24:499436..503014- (Nannochloropsis oceanica) TCCCTCCCTCTCGACTCCCTCTCCTCGGCTCGTTCGCCCACCCATACGCC
TTCATCTTTCCGACCCTAATTTTATACAAATATATATAATAAATGACACA
TACTCGTATAGATATTCCTTTCCTCCCTCCCCTCCACTCTAAAAAGGCGT
CATTCCTCCTCCCCTCTCACCCCCTCCTCCCATCCCTCCACCTCCTATCC
CTGCAACCCCTATCCCTCCCCCCTACCCATCCCTCCTCCTCCTCCTAATC
CTCCTCCTAGAGGCGCTGCTGCTGTTCCTCCTCCCGCTCCCCCTCCTCCT
CCTCCTCCTCCCCAACCAAAAATAGCAGGCAGGCTCATCTGTATTAATCG
TTTCAAAATCGCCTTCCTTCCCCTCGTCACAGTCACCTCGAACATCTCCT
CCGCCTCCATCGAGAAATGGAAGATCCAATCCCCCGTCGATGTGGGGATG
ATCTTTATCTCCCTCGGTGGCATCGGCATCCCTCCCCTCCCCCTCCCCCT
CCGCCCCCTGAACGACGGAATATGAGCTCTTCTGTCGGGCCACTGTCAAG
CATAAGCCCGATCTCCTCTGCCGTCAGGGAGAGCCTTTTTGTCCCCTTCC
ATTCATACGCACCACTTGGGCCCTTCTTCGTAAATTCTACGAGCAACCGC
GCATTGTTCTTGTAGTTAAGAGTGCCTCCTCCTCCGCCTCCTCCTCCGCC
TCCTCCTCCGCCTCCTCCTCCAGGTGGAGAGCCACCACCACCACCGCCCA
CCCCCCCCGGGTTGTTGGTAGGTGGTCAGGCGAAACTTGAGCATGCAGTT
CTCGCCAAAGACGACGAAGTCAGGGTCACTCCTCTGATTGGTAGGGAAGG
CATTATTGCCCATATCGGAGAAGGATGATGTGGAAAAGGTTACGGAGGAG
GGGGAGGAAGAGGAGGAGGGGAAGGAGGAGGAGGAGGAAAAGGAGATACC
GCGTAGAGTAGAGGAATAGGTACAAGGGAGGGAGGAAAGGAAGCAGGTGG
CGCTGCTGTTCTTGTGGGTACTCGTACAGGGCTTCCGTTGCATCAGTACT
ATGTTTCGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGGGCTGCAGGAAG
CCGGAAGAATCGAGAATTTACAGTCTGGGCGCTGCTGCTGCTCCTGGTGC
CGCTACGGAGAAGAAGCATGGTGCTGCCTGTAACAATTTGTGGTGATCGT
AAGGTAGTGGGGAAAAAGCGTGTGACCGCCGTGACGCTGCATCGCTGAAT
CGTTTGGCCGGGACACTGAGACGTGCTGTGATAGCGTGCGGCAGCATGCT
TCTGCCTTTGTCCTAACTACCATGTATAGATTCAGTAATACTGCACCCCT
GAGCTGGCCGACACTGCATTTTAATTAAATAGCTTCGCTTTGCAGGTGGG
GAGGTTGTCGTCGCTTCTCCCAATGGGATCAGTCACGACAAGTTCTATAA
TTTCACCCTAGACGACACTGTCCAAAAAGTCACCAAGCGACTTGCAGATC
AAAAAAGGATAGGACTGCTAGTAAGTCTGGTGCTTGCTTGCTTGGCTGTG
TATGGCATGATTATTATTATCATTATGAAATTACTTTTTTCGATTTTTCT
GTAAGATCGATAGCGACCCTTGTTAAGCCTCTTGACATGTCAAAATATTT
CATATTTCATGGCGTCGTCTAAACCCATTGACATGTCTGAAAAGGAAGTG
AGGATCGTTGGGACAGGGCTCTAAATTCAATCAACCTCTCCTCGTTGCCT
TGCCTCATCATCAGGGGGGATTCCTTGTCATCATAATTGCATCTACACGT
ACCCACGTACAATTACAGGACCAAATGTTGTTGACCCCTCGCTCCGCCGC
CTCCGCCTCCGCCTCCCCTCTCGTCTTCCCCACAAAACGTATTCCCTTTG
GTCCCCACGGCCGGCTTGTCCCTATCCTCTTGCAAAACGAGGCCGGGCCG
TGCCCATTGCTTGCCGTGGCCAACATTCTCCTCCTTCAACGGCAGCTGGA
CGTGGACCCGGAGTACACAAAGGTGTCTCTGATTGACATACTGACGGGCA
TTGCAAATCGTGTCTTGGAGGCTACCTCGACCGCTGCGAAAGCGGCCAGT
ACTGCTGATGCCGTTGCCTTTGAGGCTCCTGGGGGTGGCGACGAGATTGC
AAAGGCTGTCGGGGGACATGCCGATAAGGTGAGTTATGCGGTAACGCTTC
TCGATACTCTGTCTATCTCACACAAACAACAAGAGTCAATCCTCGCTCGA
CTGCATCCTGTTCTCATTCACCTCATCCTCCCTCCCTCGCTCCCTCCCTC
CCTCTCCTCCCTGCAGCATGTTGCTTATCAAGTCGACGAGGTCATTCACC
TTCTTCCTCGCTTGCGACATGGTATGGACGTAAACGTCCGTTTCACTGAC
GTAGCTGCGTTCGAGCCAACAGTGGAGCTTTCTGTCTTCGATGCCCTAGG
GATCCGACTATTCCATGGGTGGGTGGTAGGGGAAGAGGACGAGGACGAGG
AAGGGAGGGAGGGAGGGGTCTTGGCGCAGGTGGTGGGGAACATGACTTAC
AACCAGGTCATGGAGAAGTTGGTGGCAATGAAGGAGGGAGGGAGGGAGAG
AAGGAGGCAGAAGGGCGAGATGGATCGGGGTGAGGGCAAAAGGGCATCAA
GTCAGAAACTACCTTCCCTCCGCTCCTCCTCCTCCATCTCCTCCTCCTCC
TCCAGTTCCTCCTCCTCCTTCTCCTCCAGCACCTCATTCTCCCTCCCTGT
ATCCTCTGGGGCCACTGAATCTCTCTCCCTCCTCGAGGACTTCCTCCTTC
GCACCCCCGGGCAGCTCACCCTCCGGGGACTCTCCCTCCTCCACTCTACC
GTCAGAGAAAACGAGCTCTGCGGCCTCTTTCATCACAACCACTTCTCGGT
CCTGTTGAAGAAAGGGGGTAGGTTGTACTTATTGGTCACAGATGAAGGGT
ACAAAGAGGAGGCTCATGTGGTGTGGGCGAGGTTGGACGGCGTCTCTGGC
GCCGGAGAGCTCGTAGACGGTTTGTTCAGACCGGCGGTTGAAGGGGGAGG
GGCAGGAGGAGGAGGAGGAGGGGGTGTAGAAGGTAGGCTTGGTGGTTGTG
ATCATGGCCATGCTGCCGTTGGGACGGCGATGGCCAGATCTCTGAGGGAG
CAGGAGGAGGCAGAGGCGCGGTTGATAGAACGAGTCATGGCGGCCTCCTT
GCGCGATGTCAGTGGACAAGGCAGGGAAGTAGACGAAACAGGGGGGATAA
GAGAGGAGTTTAAGGAGGAAATGAGGAGGAACGACGAGGAATTTTGCCTT
GACCGGGTGTATTCGGAAGCGGAGCTGGCGGAGATGCGAGAGCTTGAAAG
AGATTTTCAATATGCCAGGCTTCAGGAAAAAGAAAGTAGGCACGGGCCGA
GAGGAAGGACAGAAGGAAGTCAGCAACTAGTTGGAAGACGGGTGGCGAGT
CGGGGCAGGGGGATGGGGGAGAGGGGTGGGAAAAAGGGAAAAAAAGACAC
TTGTACACTGCAATAACATTCAAAAGTCCACACCACGATTAACAATGAAG
TGAATAAAAAGTATCAAAGTTCTTTTGGG back to topCoding sequence (CDS) from alignment at chr24:499436..503014- >NO24G01880.1 ID=NO24G01880.1|Name=NO24G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr24:499436..503014- (Nannochloropsis oceanica) ATGTTGTTGACCCCTCGCTCCGCCGCCTCCGCCTCCGCCTCCCCTCTCGT CTTCCCCACAAAACGTATTCCCTTTGGTCCCCACGGCCGGCTTGTCCCTA TCCTCTTGCAAAACGAGGCCGGGCCGTGCCCATTGCTTGCCGTGGCCAAC ATTCTCCTCCTTCAACGGCAGCTGGACGTGGACCCGGAGTACACAAAGGT GTCTCTGATTGACATACTGACGGGCATTGCAAATCGTGTCTTGGAGGCTA CCTCGACCGCTGCGAAAGCGGCCAGTACTGCTGATGCCGTTGCCTTTGAG GCTCCTGGGGGTGGCGACGAGATTGCAAAGGCTGTCGGGGGACATGCCGA TAAGCATGTTGCTTATCAAGTCGACGAGGTCATTCACCTTCTTCCTCGCT TGCGACATGGTATGGACGTAAACGTCCGTTTCACTGACGTAGCTGCGTTC GAGCCAACAGTGGAGCTTTCTGTCTTCGATGCCCTAGGGATCCGACTATT CCATGGGTGGGTGGTAGGGGAAGAGGACGAGGACGAGGAAGGGAGGGAGG GAGGGGTCTTGGCGCAGGTGGTGGGGAACATGACTTACAACCAGGTCATG GAGAAGTTGGTGGCAATGAAGGAGGGAGGGAGGGAGAGAAGGAGGCAGAA GGGCGAGATGGATCGGGGTGAGGGCAAAAGGGCATCAAGTCAGAAACTAC CTTCCCTCCGCTCCTCCTCCTCCATCTCCTCCTCCTCCTCCAGTTCCTCC TCCTCCTTCTCCTCCAGCACCTCATTCTCCCTCCCTGTATCCTCTGGGGC CACTGAATCTCTCTCCCTCCTCGAGGACTTCCTCCTTCGCACCCCCGGGC AGCTCACCCTCCGGGGACTCTCCCTCCTCCACTCTACCGTCAGAGAAAAC GAGCTCTGCGGCCTCTTTCATCACAACCACTTCTCGGTCCTGTTGAAGAA AGGGGGTAGGTTGTACTTATTGGTCACAGATGAAGGGTACAAAGAGGAGG CTCATGTGGTGTGGGCGAGGTTGGACGGCGTCTCTGGCGCCGGAGAGCTC GTAGACGGTTTGTTCAGACCGGCGGTTGAAGGGGGAGGGGCAGGAGGAGG AGGAGGAGGGGGTGTAGAAGGTAGGCTTGGTGGTTGTGATCATGGCCATG CTGCCGTTGGGACGGCGATGGCCAGATCTCTGAGGGAGCAGGAGGAGGCA GAGGCGCGGTTGATAGAACGAGTCATGGCGGCCTCCTTGCGCGATGTCAG TGGACAAGGCAGGGAAGTAGACGAAACAGGGGGGATAAGAGAGGAGTTTA AGGAGGAAATGAGGAGGAACGACGAGGAATTTTGCCTTGACCGGGTGTAT TCGGAAGCGGAGCTGGCGGAGATGCGAGAGCTTGAAAGAGATTTTCAATA TGCCAGGCTTCAGGAAAAAGAAAGTAGGCACGGGCCGAGAGGAAGGACAG AAGGAAGTCAGCAACTAGTTGGAAGACGGGTGGCGAGTCGGGGCAGGGGG ATGGGGGAGAGGGGTGGGAAAAAGGGAAAAAAAGACACTTGTACACTGCA ATAA back to top
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