Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:488016..491090 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01840.1 vs.
Match: EWM24393.1 (hypothetical protein Naga_100283g6 [Nannochloropsis gaditana])
HSP 1 Score: 334.3 bits (856), Expect = 7.100e-88
Identity = 183/272 (67.28%), Postives = 202/272 (74.26%), Query Frame = 0
Query: 301 MSRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCSYGQMSVMQQGVGNEGRWLTKLAVTGFASCWHFSAATRDPVYGRFPTIKEYFERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQRRLTANKNGTSYFEEDLRPATTSSSFPMA---------GVDAPTPSSLPPSHAISYMAASGMAISKVLPSSLPPSPSSSSSLSAAAAAAPTAAAAAAASPEEEKEQKYRVDRLYLIFSTLRRWDVPKIFEGLEW 564
M RAGIGRRM GG G GG GWG +YTLSVEIFDRKGGFRLFCSYG++S+M QGVG EGRW+TKLAVTGFASCWHFSAA+RD V+GRF TIK+YFERAHEPGL+HCLCTEVT MHK TG+MAVLYASSKES+RRL KNGTSYFEE+LRPA SS+ MA G+ S PS I Y+AASG+A+SKV S PPS SS S L A S +EEKEQKYRVDRLYLIFST RRWD+PKIFEGLEW
Sbjct: 1 MRRAGIGRRMGGGGG--------GGAGWGEEYTLSVEIFDRKGGFRLFCSYGRVSIMHQGVGVEGRWMTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKESRRRLAGEKNGTSYFEEELRPAFASSAGVMASTASGSSHPGLPPSLSSFCAPSPGIPYLAASGIAVSKV---STPPSTSSLSPL-----------PAGIPSMDEEKEQKYRVDRLYLIFSTERRWDLPKIFEGLEW 250
The following BLAST results are available for this feature:
BLAST of NO24G01840.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 7.10e-88 / Id = 67.28 Sequence EWM24393.1
Match Name E-value Identity Description
EWM24393.1 7.100e-88 67.28 hypothetical protein Naga_100283g6 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G01840.1 ID=NO24G01840.1|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp ACGACAGGGCACACTGCCAGACAGACTCTCAACCACACACTCGGCGGAGC GCGGCACTTCTCTTTTTACTTCCCACTGCAACTCCCAAGCGGCACCGCAC GACGAGCAGTAGCAGCACAAACGGTTGCACCTGTCGAAGCATGTCTACCT TCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGTGTCAGGCATG GTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTCATTCAGGGCA AGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCACACGAGCTGC AGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTTATCGTCGTCG TCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGTTGACCTCTTC TGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAGGAGAACCCCT CCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTCTCTGCCCCGG TCTAACAGCATCCTAACGGACGATGAATCCACCAACAGCAGCATCTCCTC GCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGCCGCCGACCCCTCT CCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCG GCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCTACTCCACCACCCC CTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTTCCTTCCTCCCTCC TCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCCCAGTTACACCGAC GGGACGGACGGACGGAGACAACTCGGAACCCTCTCACTCGTCAGCAAGCA ATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAACCGTTGTGCATCG CACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCCTGTGGAGCTGCTA CCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAGGGAGGGAAGGAGG AGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGCTGCATGAGTAGGG CAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAGCGGGCGGGCAAGC GGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACACATTAAGTGTCGA GATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGTTCCTATGGCCAGA TGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACGGTGGTTGACAAAA CTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCTCGGCCGCCACCCG GGACCCTGTCTATGGCCGTTTCCCCACCATCAAGGAGTATTTTGAGCGCG CCCACGAACCCGGTCTAGACCACTGCCTTTGTACCGAGGTAACAGTCATG CATAAAGACACGGGGAAAATGGCTGTCCTCTATGCCTCGTCCAAGGAATC CCAACGTCGGCTCACGGCCAATAAAAACGGCACTTCCTACTTCGAAGAGG ACCTCCGTCCCGCCACCACCTCCTCGTCCTTCCCGATGGCAGGAGTGGAT GCTCCCACCCCTTCCTCCCTCCCGCCTTCGCACGCCATCTCTTATATGGC GGCTTCAGGGATGGCAATCAGCAAGGTCCTCCCTTCCTCCCTCCCTCCCT CCCCCTCCTCTTCCTCCTCCCTCTCTGCCGCTGCCGCTGCCGCGCCTACA GCTGCTGCTGCTGCTGCTGCATCACCGGAAGAGGAGAAGGAGCAGAAATA CCGCGTAGATCGCCTATACTTGATTTTCAGCACACTGAGGAGATGGGATG TACCCAAGATTTTCGAGGGATTGGAATGGGCGTAAGCTGTCCCTCCTTCG CTCCGCTCCCTCCCGTCCTCTCTCCCTCTCCTTCCTCCTATCGAGGTAGA GAAGAGCCGCACATTTAGTTTTTGTCTATCATACATACATCAATCAGAGA GCAGGGAGAGGGAGGAGGCAGGGAGATGGGGTTTATTTATTCATTATTAT TATCATTTTATCGTTTGCGTATCGAGGAGTGCATCGAGCAAACACTCTAT AGTCCAGATTTATTTATTTGAATAGATTATCATTCACTTCGGTGATATCC ATTTATTCATATATATTTATGATTCATTTATATTTTATTGAAGCCCCTCA CGACAAGAGAGAGCTTGCTGAGAATTTTGTGGTTAAACCCATCGGCAACA ATATCAACAACAGTGAGCAGCATAGACAGCAGTAGGACTAGAATGAATGA ATCAGCTGGTGTTGCAGCAGCGGCTGCAGCAGCAGCAGTGTCATTATCAA TAGCAATAGCAGCAGCAGAAAAGAGAAAAAAAGTACCACACACTATCAAG GTTGATGCATGATCACACATGCATACACCTACACCGACCCCGACTCACAC ATACACATGTACTCACAGTAAAAATGATCACAACGAATATTTAGAAATAT AGAATATATTTTTAGCAAGCGGAAGACAGGGAGATTTAAGGATAAGTCAG AAATGACTAGCATGACACAAAAAAGATGAAAGATGGAAAATTAAGGAATG GTGTAAAATATGAGCCTTTCATTAGCAGCCGCAGCAAATGCGTCGTGAAG G back to top protein sequence of NO24G01840.1
>NO24G01840.1-protein ID=NO24G01840.1-protein|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp MSTFMGTSNILALLKIVSGMVAGPNGKELSNAIHSGQVPAEDLESLAGLA HELQALAGRSRNDRSLLSSSSSSMLTESEDTMMLTSSASSLSGLEEREGE ENPSLSALAISPFLSSSLPRSNSILTDDESTNSSISSPCTSTSLSLTHRR RPLSLPSSSSSSSSSSSSSSAHLPVKRSHSSSYSTTPSSSRQPITLSSLP SSLLLHIFDFVWSGRPSYTDGTDGRRQLGTLSLVSKQWRDLAGSDQLWKP LCIARWPWLKSLKGGPVELLPSLKMEDGEEEGGREGGGEWREFCLRNGRC MSRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCS YGQMSVMQQGVGNEGRWLTKLAVTGFASCWHFSAATRDPVYGRFPTIKEY FERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQRRLTANKNGTSY FEEDLRPATTSSSFPMAGVDAPTPSSLPPSHAISYMAASGMAISKVLPSS LPPSPSSSSSLSAAAAAAPTAAAAAAASPEEEKEQKYRVDRLYLIFSTLR RWDVPKIFEGLEWA* back to top mRNA from alignment at chr24:488016..491090-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01840.1 ID=NO24G01840.1|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3075bp|location=Sequence derived from alignment at chr24:488016..491090- (Nannochloropsis oceanica) ACGACAGGGCACACTGCCAGACAGACTCTCAACCACACACTCGGCGGAGC
GCGGCACTTCTCTTTTTACTTCCCACTGCAACTCCCAAGCGGCACCGCAC
GACGAGCAGTAGCAGCACAAACGGTTGCACCTGTCGAAGCATGTCTACCT
TCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGTGTCAGGCATG
GTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTCATTCAGGGCA
AGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCACACGAGCTGC
AGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTTATCGTCGTCG
TCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGTTGACCTCTTC
TGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAGGAGAACCCCT
CCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTCTCTGCCCCGG
TCTAACAGCATCCTAACG GTACGTCCCAAGTCATTACTCATATGACAAAA
CCCATACCCACATGGCCATGCTTCCTTCTTAAACTTTTGTATGCGCTGTT
GCTTCTTACCTGCCTGCCTGCCTGCCTGCCTGTCTGTCTGTCCTCTCTCT
CTCCCTCCCTCCCTGCTCTCTCTGAGTACCTATTACACACAATATTTCTC
CTTGCTGTCGACTCTCTCTCCCTTCACACGGATCAGACACGTGACCATGC
CACCTGAGCAACCACAACAAAATAATAAAACGTGACTGTCGTCGCTTCGA
ATCAATCACGCACCCAAACATACTCTCGCCCTCCCTCCGTCCCTTCCTCC
TTTCCTTCCTCCCACCTTTTGCCAATCATAGGACGATGAATCCACCAACA
GCAGCATCTCCTCGCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGC
CGCCGACCCCTCTCCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTC
CTCCTCCTCCTCGGCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCT
ACTCCACCACCCCCTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTT
CCTTCCTCCCTCCTCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCC
CAGTTACACCGACGGGACGGACGGACGGAGACAACTCGGAACCCTCTCAC
TCGTCAGCAAGCAATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAA
CCGTTGTGCATCGCACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCC
TGTGGAGCTGCTACCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAG
GGAGGGAAGGAGGAGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGC
TGCATGAGTAGGGCAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAG
CGGGCGGGCAAGCGGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACA
CATTAAGTGTCGAGATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGT
TCCTATGGCCAGATGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACG
GTGGTTGACAAAACTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCT
CGGCCGCCACCCGGGACCCTGTCTATG GTAAGTGGGCATGTCCTCCCTCC
CTCCCTCCCTCGTTTTCTTTCCTGTTCTAATACAGGAATGGCTGTCCCAT
CATCATCGTCTCACTCCCTCCCTCCCTCTTACCCTCAGGCCGTTTCCCCA
CCATCAAGGAGTATTTTGAGCGCGCCCACGAACCCGGTCTAGACCACTGC
CTTTGTACCGAGGTAACAGTCATGCATAAAGACACGGGGAAAATGGCTGT
CCTCTATGCCTCGTCCAAGGAATCCCAACGTCGGCTCACGGCCAATAAAA
ACGGCACTTCCTACTTCGAAGAGGACCTCCGTCCCGCCACCACCTCCTCG
TCCTTCCCGATGGCAGGAGTGGATGCTCCCACCCCTTCCTCCCTCCCGCC
TTCGCACGCCATCTCTTATATGGCGGCTTCAGGGATGGCAATCAGCAAGG
TCCTCCCTTCCTCCCTCCCTCCCTCCCCCTCCTCTTCCTCCTCCCTCTCT
GCCGCTGCCGCTGCCGCGCCTACAGCTGCTGCTGCTGCTGCTGCATCACC
GGAAGAGGAGAAGGAGCAGAAATACCGCGTAGATCGCCTATACTTGATTT
TCAGCACACTGAGGAGATGGGATGTACCCAAGATTTTCGAGGGATTGGAA
TGGGCGTAA GCTGTCCCTCCTTCGCTCCGCTCCCTCCCGTCCTCTCTCCC
TCTCCTTCCTCCTATCGAGGTAGAGAAGAGCCGCACATTTAGTTTTTGTC
TATCATACATACATCAATCAGAGAGCAGGGAGAGGGAGGAGGCAGGGAGA
TGGGGTTTATTTATTCATTATTATTATCATTTTATCGTTTGCGTATCGAG
GAGTGCATCGAGCAAACACTCTATAGTCCAGATTTATTTATTTGAATAGA
TTATCATTCACTTCGGTGATATCCATTTATTCATATATATTTATGATTCA
TTTATATTTTATTGAAGCCCCTCACGACAAGAGAGAGCTTGCTGAGAATT
TTGTGGTTAAACCCATCGGCAACAATATCAACAACAGTGAGCAGCATAGA
CAGCAGTAGGACTAGAATGAATGAATCAGCTGGTGTTGCAGCAGCGGCTG
CAGCAGCAGCAGTGTCATTATCAATAGCAATAGCAGCAGCAGAAAAGAGA
AAAAAAGTACCACACACTATCAAGGTTGATGCATGATCACACATGCATAC
ACCTACACCGACCCCGACTCACACATACACATGTACTCACAGTAAAAATG
ATCACAACGAATATTTAGAAATATAGAATATATTTTTAGCAAGCGGAAGA
CAGGGAGATTTAAGGATAAGTCAGAAATGACTAGCATGACACAAAAAAGA
TGAAAGATGGAAAATTAAGGAATGGTGTAAAATATGAGCCTTTCATTAGC
AGCCGCAGCAAATGCGTCGTGAAGG back to top Coding sequence (CDS) from alignment at chr24:488016..491090-
>NO24G01840.1 ID=NO24G01840.1|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr24:488016..491090- (Nannochloropsis oceanica) ATGTCTACCTTCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGT GTCAGGCATGGTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTC ATTCAGGGCAAGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCA CACGAGCTGCAGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTT ATCGTCGTCGTCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGT TGACCTCTTCTGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAG GAGAACCCCTCCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTC TCTGCCCCGGTCTAACAGCATCCTAACGGACGATGAATCCACCAACAGCA GCATCTCCTCGCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGCCGC CGACCCCTCTCCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTC CTCCTCCTCGGCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCTACT CCACCACCCCCTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTTCCT TCCTCCCTCCTCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCCCAG TTACACCGACGGGACGGACGGACGGAGACAACTCGGAACCCTCTCACTCG TCAGCAAGCAATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAACCG TTGTGCATCGCACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCCTGT GGAGCTGCTACCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAGGGA GGGAAGGAGGAGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGCTGC ATGAGTAGGGCAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAGCGG GCGGGCAAGCGGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACACAT TAAGTGTCGAGATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGTTCC TATGGCCAGATGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACGGTG GTTGACAAAACTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCTCGG CCGCCACCCGGGACCCTGTCTATGGCCGTTTCCCCACCATCAAGGAGTAT TTTGAGCGCGCCCACGAACCCGGTCTAGACCACTGCCTTTGTACCGAGGT AACAGTCATGCATAAAGACACGGGGAAAATGGCTGTCCTCTATGCCTCGT CCAAGGAATCCCAACGTCGGCTCACGGCCAATAAAAACGGCACTTCCTAC TTCGAAGAGGACCTCCGTCCCGCCACCACCTCCTCGTCCTTCCCGATGGC AGGAGTGGATGCTCCCACCCCTTCCTCCCTCCCGCCTTCGCACGCCATCT CTTATATGGCGGCTTCAGGGATGGCAATCAGCAAGGTCCTCCCTTCCTCC CTCCCTCCCTCCCCCTCCTCTTCCTCCTCCCTCTCTGCCGCTGCCGCTGC CGCGCCTACAGCTGCTGCTGCTGCTGCTGCATCACCGGAAGAGGAGAAGG AGCAGAAATACCGCGTAGATCGCCTATACTTGATTTTCAGCACACTGAGG AGATGGGATGTACCCAAGATTTTCGAGGGATTGGAATGGGCGTAA back to top