NO24G01830, NO24G01830 (gene) Nannochloropsis oceanica

Overview
NameNO24G01830
Unique NameNO24G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3089
Alignment locationchr24:484079..487167 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:484079..487167 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G01830 vs. NCBI_GenBank
Match: EWM24390.1 (hypothetical protein Naga_100283g5 [Nannochloropsis gaditana])

HSP 1 Score: 456.1 bits (1172), Expect = 2.600e-124
Identity = 347/758 (45.78%), Postives = 403/758 (53.17%), Query Frame = 0
Query:  209 ALSQQGLDEALLAPYAQAIPIIAPVERDEEKRNVHRVREYWLEHEAIKHLPALLSLQLPLATFEQHYLSANAHNVKYARGTLRETVRTFFREHTDDSGVRVLTLKLSERPVCQKPSKNILKRWNLSNGMLYFFYAAVGRAAPPTGKEILEPFYCQKRVDFIRRICGGAMAKGGLGGMGEEELGGAKATTEAGVLEGEEIGRDGGVGMKXXXXXXXXXXXXXXXXXAFQEQLHQM----------GRSRKRRRESNDAPFPLSELYISADTACPPSLPASCEVDGKIVTVKTEDRNEEGKKEEQMIQSLISFLKGHVWKGVEEEAVRAAVAAGTWRLVEEESVDPSLDPSLAYLSRPPRSFWVPSLASLTPLEEGGNGGGEEGREEGVEGWGWENGCLPVFVRACRRNWSRVEAAWEAWNEDLGNNALEWKELWREEVGGKVEKDV--------------------GGMEEEEERFVLFPCGVDGAGTHPEQEN----PVLADSAAAAYTEGGKEGGEEEREGRGRAGGGSIPLSSMPHGQMNSQPSPTYLRRGLSSSIPSTFSSSLPSSVTPARAFPSASAASVADDFFSVAVKQEEXXXXXXXXXXXXSAGVSAATTMEGG------------------------------------EGWGRKGGGRGEEGVMMDFGLDMTDTEFQALLSEVEEEGKGEKQXXXXXXXXXXXXMG-------AREGGGCGYMDESFYFAYPGPQATAAGAGGEAVPI 890
            A+ QQG+DE LL  Y QA  +IAPVERDEEKRNVHRVREYWLEHEAIKHL  L +LQ+P+ATFE H+L ANAHN KY RGTLRETVRTFFRE TD++GVRVLTLKLSER V  KPSKNILKRWNLSNGMLYFFYAAVGR+APPTG EILEPFY QKRVDFIR++CGG    G   G+        +   E G  +GE +G   G+          XXXXXXXXX   +   H                         P PLSELY+ AD       P S  V+   V  +     E+G  +E+ +  L+SFLK  VW GVEE+AVR AV+AG WRLV EES++   DPSLAYL+RP R+FWVPSLA   P  E G              WGWENGCLPVFVRACRRNW++VE  WEAWNEDLGNNALEWKEL                                  G +EEE+ F+LFPC ++GA    E  +     V+ D      TEG  EGG  E        G  +  + +P    +  P      R   S +PST  SSL  S TP R+     A    D FFSV+V+ E+   XXXXXXXXX          EG                                                   +MMD GL+M D                   XXXXXXXXXXX  G           GGCG +DESFYFAYPGPQ +  G+ GE  P+
Sbjct:   32 AVGQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERG--QGEAVGGGEGLTEAGVGTAATXXXXXXXXXERHRAGSHDFXXXXXXXXXXXXXXXXXXXXXXXPLPLSELYVPAD-------PVSASVEKAGVKEEAPVEVEDG--DEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLE--ADPSLAYLARPARTFWVPSLA--PPAWEEGK---XXXXXXXXXXWGWENGCLPVFVRACRRNWAKVEGVWEAWNEDLGNNALEWKELXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVAGESGRKEEEDSFLLFPCSLEGAQAETENVSMPSMGVMRDGREDV-TEGVTEGGLPEHR------GAPVVFAPVPDPNGDFPPLGYGQTRPFPSLVPSTDPSSLSFSSTPTRSV--TVAPPPGDVFFSVSVEGED--GXXXXXXXXXXXXXXXXXXXEGALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMMMDLGLNMGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGEVNTSGRGMGEGGCGLVDESFYFAYPGPQ-SEVGSNGEVPPL 759          
BLAST of NO24G01830 vs. NCBI_GenBank
Match: XP_005855550.1 (hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526] >EKU20816.1 hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 402.5 bits (1033), Expect = 3.400e-108
Identity = 332/799 (41.55%), Postives = 392/799 (49.06%), Query Frame = 0
Query:  210 LSQQGLDEALLAPYAQAIPIIAPVERDEEKRNVHRVREYWLEHEAIKHLPALLSLQLPLATFEQHYLSANAHNVKYARGTLRETVRTFFREHTDDSGVRVLTLKLSERPVCQKPSKNILKRWNLSNGMLYFFYAAVGRAAPPTGKEILEPFYCQKRVDFIRRICGG----------------AMAKGGLGGMGEEELGGAKATTEAGVLEGEEIGRDGGVGMKXXXXXXXXXXXXXXXXXAFQEQLHQMGRSRKRRRESND-----------------------APFPLSELYISADTACPPSLPASCEVDGKIVTVKTEDRNEEGKKEEQMIQSLISFLKGHVWKGVEEEAVRAAVAAGTWRLVEEESVDPSLDPSLAYLSRPPRSFWVPSLASLTPLEEGGNGGGEEGREEGVEGWGWENGCLPVFVRACRRNWSRVEAAWEAWNEDLGNNALEWKELWREEVGGKVEKDV--------------------GGMEEEEERFVLFPCGVDGAGTHPEQEN----PVLADSAAAAYTEGGKEGGEEEREGRGRAGGGSIPLSSMPHGQMNSQPSPTYLRRGLSSSIPSTFSSSLPSSVTPARAFPSASAASVADDFFSVAVKQEEXXXXXXXXXXXXSAGVSAATTMEGG-EGWGRKGGGR----------------------------------GEEG-VMMDFGLDMTDTEFQALLSEVEE---------------EGKGEKQXXXXXXXXXXXXMGAREG-----GGCGYMDESFYFAYPGPQATAAGAGGEAVPI 890
            ++QQG+DE LL  Y QA  +IAPVERDEEKRNVHRVREYWLEHEAIKHL  L +LQ+P+ATFE H+L ANAHN KY RGTLRETVRTFFRE TD++GVRVLTLKLSER V  KPSKNILKRWNLSNGMLYFFYAAVGR+APPTG EILEPFY QKRVDFIR++CGG                A+   G  G G E +GG +  TEAGV  G      GG+G                            GR  + R  S+D                        P PLSELY+ AD       P S  V+   V  +     E+G  +E+ +  L+SFLK  VW GVEE+AVR AV+AG WRLV EES++   DPSLAYL+RP R+FW                                                 VE  WEAWNEDLGNNALEWKEL                                  G +EEE+ F+LFPC ++G  T  E  +     V+ D      TEG  EGG  E        G  +  + +P    +  P      R   S +PST  SSL  S TP R+     A    D FFSV+V+ E+   XXXXXXXXX          EG  + W ++                                      GEEG +MMD GL+M D   QA ++                   EG     XXXXXXXXXXXX     G     GGCG +DESFYFAYPGPQ +  G+ GE  P+
Sbjct:  346 IAQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQG-EAVGGGEGLTEAGV--GTAATAAGGLG----------------------------GRGDRHRAGSHDFXXXXXXXXXXXXXXXXXXXXXXXPLPLSELYVPAD-------PVSASVEKAGVKEEAPVEVEDG--DEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLE--ADPSLAYLARPARTFW-------------------------------------------------VEGVWEAWNEDLGNNALEWKELXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVAGESGRKEEEDSFLLFPCSLEGPQTETENVSMPSMGVMRDGREDV-TEGVTEGGLPEHR------GAPVVFAPVPDPNGDYPPLVYGQTRPFPSLVPSTDPSSLSFSSTPTRSV--TVAPPPGDVFFSVSVEGED--GXXXXXXXXXXXXXXXXVFQEGALKPWVKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAGXXXXDSSSNFLVLHPQGMEGGXXXXXXXXXXXXXXXXEVTMSGRGMGEGGCGLVDESFYFAYPGPQ-SVVGSNGEVPPL 1041          
The following BLAST results are available for this feature:
BLAST of NO24G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24390.12.600e-12445.78hypothetical protein Naga_100283g5 [Nannochloropsi... [more]
XP_005855550.13.400e-10841.55hypothetical protein NGA_0641700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002805NSK002805Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01830.1NO24G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133991gene_7408Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100283g5gene6086Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01830.1NO24G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01830 ID=NO24G01830|Name=NO24G01830|organism=Nannochloropsis oceanica|type=gene|length=3089bp
ATGTTCGATTGTGACGGATGCCTTGgtgagggtgtggaggatggccatcc
ttttgtgatgaggtggtagtgttgggggtggggatctcgaggaggggggg
ttaagtcgaggctgaatgccacgtcagaaccctcggatcaggaatggaat
agggaggagggcgcaagccctttggcctgccctccctcctgttccctcgg
actgtgtcttcgcacaccggcggcgcaacgaaagacttggtaggcacatt
tactcacttccttccccttcaccccccctccctccacagGCTCGAGTAAA
GCGGCAATCGCGGCAGCCTCAACACCCAGCCACAACCCTTCCTCACTACT
GTCCGGAACCGTGATTGGGACACGTAATTTAAAGCAAGAAGAAAAGACTC
TGTACTCCTCCCTGCCGCCCTTCCTCCCTTGTCACGAGGAAGTCGCGAAG
GGTCCAGGTAGTAGCAGCTGTCTTACCAGCAGCGGCAGCAGCGGCAGTGC
CCAGCAAGAGGAGGAGGAAGAGCAGCAGCAGCAGCAGCAGCAGTCGCCGG
CGACGCCCCTTCGTCTAGCTGCAGTCAAAGAAGAAAAAGAGGAACTTCTC
CTGCAGCAACAGCCCCAAAAGGAGCAGCAGTTCCATCAGCAGCAAGGACA
AAAAGAGATCAAAACTCATCTCCTGCCTTTGCGCTCCCCCCGTGGCACGT
TTTGCAGGCCGACTTCTACCGAAGCAGGTCTCGATCACAACAACATCAGC
GGCCGCAGCCGTCGTCATCGCCGTCGTTCTACCTCGATGGTTTCCACCAC
ACGCCGGCATCGCAGGCCCAAGCCCAGCAGCAGCAGCAGCAGCTTGCTTA
ATCGAGGTCGAGGAGGAAGAGGAGGTCACGGCAACAGTGCATTGAGTCAG
CAGGGTCTTGATGAGGCCCTCCTTGCGCCGTACGCCCAAGCCATCCCCAT
CATTGCTCCTGTGGAGCGTGACGAGGAGAAACGAAACGTTCATCGGGTCC
GGGAGTACTGGCTCGAACACGAGGCGATCAAGCACCTCCCCGCCCTCCTC
TCCCTTCAGCTACCCCTTGCCACCTTCGAGCAGCACTATCTCAGTGCCAA
TGCCCACAACGTGAAGTATGCCCGAGGCACATTACGTGAAACGGTCCGAA
CGTTTTTCCGCGAACACACGGACGACAGCGGGGTCCGTGTTCTCACCCTC
AAGCTCTCGGAGCGCCCTGTATGTCAAAAACCCAGCAAGAACATCCTCAA
ACGTTGGAACCTCAGCAACGGCATGCTCTACTTCTTTTACGCGGCCGTTG
GGAGGGCGGCCCCACCCACGGGCAAGGAGATTTTGGAACCCTTTTATTGC
CAAAAGCGCGTGGATTTCATTCGGAGGATTTGTGGAGGGGCGATGGCGAA
AGGAGGGCTCGGCGGGATGGGCGAGGAGGAGTTAGGCGGAGCGAAAGCGA
CGACGGAGGCGGGGGTCCTTGAGGGCGAAGAGATCGGGAGGGACGGAGGG
GTGGGGATGAAAAGGAAAGCTGCTGGAGGAGGAGGGAGAGGAGGCGGAAG
TCATGATTTTTTCGCATTTCAGGAGCAGCTGCATCAGATGGGACGATCCA
GGAAGCGACGACGAGAGTCAAATGACGCTCCTTTCCCCTTGTCTGAGCTA
TATATATCCGCGGACACTGCTTGCCCTCCCTCCCTCCCTGCCTCCTGTGA
GGTGGATGGGAAGATTGTGACGGTCAAGACGGAGGACAGGAATGAGGAAG
GGAAGAAGGAAGAACAGATGATTCAGTCCTTGATATCGTTTCTGAAGGGT
CACGTCTGGAAGGGGGTGGAGGAGGAAGCGGTGCGTGCAGCAGTAGCAGC
AGGAACATGGCGGTTGGTGGAGGAGGAGAGCGTGGATCCGTCTCTTGATC
CCTCCCTCGCTTACCTCTCCCGTCCTCCGCGTTCGTTTTGGGTGCCTTCC
TTGGCCTCTCTGACCCCACTTGAGGAAGGAGGAAACGGAGGAGGGGAGGA
AGGAAGGGAGGAGGGGGTGGAGGGGTGGGGGTGGGAGAATGGATGTCTTC
CTGTGTTTGTGCGCGCGTGTAGGCGAAATTGGAGCCGAGTGGAGGCGGCA
TGGGAGGCATGGAACGAAGACCTGGGGAACAACGCCCTGGAGTGGAAGGA
GTTGTGGAGGGAGGAAGTCGgtgcggaggaggagggagcggaagaggggg
agggggaggaggaaggagcgaaacaaggaagggtgatggagggagaggag
gatgatttgggtttgggatttgctttgaagGGGGGAAGGTGGAGAAGGAT
GTGGGAGGGATGGAAGAGGAGGAGGAGAGATTCGTGTTGTTCCCGTGCGG
AGTGGATGGAGCGGGGACCCATCCGGAACAGGAGAATCCGGTGTTGGCGG
ATTCAGCAGCAGCAGCATACACTGAAGGAGGGAAGGAGGGAGGGGAGGAG
GAAAGGGAAGGACGAGGAAGAGCAGGAGGGGGAAGCATTCCGTTATCTTC
GATGCCGCATGGTCAGATGAACTCACAGCCGTCTCCCACCTACCTTCGAC
GAGGACTTTCATCCTCTATCCCTTCCACGTTCTCGTCCTCCCTCCCTTCC
TCAGTCACACCTGCCCGTGCTTTTCCGTCGGCTTCCGCGGCGTCTGTGGC
GGACGATTTTTTTTCGGTGGCAGTCAAGCAGGAGGAGGAAGGGGAAGAAG
GAGGGGAGGAAGGGGAGGTTATATCTGCGGGAGTGAGCGCGGCAACCACC
ATGGAGGGAGGGGAGGGCTGGGGGAGGAAGGGGGGAGGAAGGGGGGAGGA
AGGGGTGATGATGGACTTTGGACTGGACATGACTGATACTGAATTTCAGG
CGTTGTTGTCTGAGGTGGAGGAAGAGGGGAAGGGCGAGAAGCAGGAAAGA
AGGGAAGAGGAGGCGAGGAAGGGTGGGAGGATGGGAGCGAGGGAGGGAGG
AGGGTGCGGATATATGGATGAGTCGTTTTATTTTGCTTATCCCGGCCCTC
AGGCTACTGCGGCGGGAGCAGGTGGAGAAGCCGTCCCGATCCTTTCTCAA
GTGTCTACATCGGCGGAAGAGGGCGGTCAATACTTCTGA
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protein sequence of NO24G01830.1

>NO24G01830.1-protein ID=NO24G01830.1-protein|Name=NO24G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=905bp
MFDCDGCLGSSKAAIAAASTPSHNPSSLLSGTVIGTRNLKQEEKTLYSSL
PPFLPCHEEVAKGPGSSSCLTSSGSSGSAQQEEEEEQQQQQQQSPATPLR
LAAVKEEKEELLLQQQPQKEQQFHQQQGQKEIKTHLLPLRSPRGTFCRPT
STEAGLDHNNISGRSRRHRRRSTSMVSTTRRHRRPKPSSSSSSLLNRGRG
GRGGHGNSALSQQGLDEALLAPYAQAIPIIAPVERDEEKRNVHRVREYWL
EHEAIKHLPALLSLQLPLATFEQHYLSANAHNVKYARGTLRETVRTFFRE
HTDDSGVRVLTLKLSERPVCQKPSKNILKRWNLSNGMLYFFYAAVGRAAP
PTGKEILEPFYCQKRVDFIRRICGGAMAKGGLGGMGEEELGGAKATTEAG
VLEGEEIGRDGGVGMKRKAAGGGGRGGGSHDFFAFQEQLHQMGRSRKRRR
ESNDAPFPLSELYISADTACPPSLPASCEVDGKIVTVKTEDRNEEGKKEE
QMIQSLISFLKGHVWKGVEEEAVRAAVAAGTWRLVEEESVDPSLDPSLAY
LSRPPRSFWVPSLASLTPLEEGGNGGGEEGREEGVEGWGWENGCLPVFVR
ACRRNWSRVEAAWEAWNEDLGNNALEWKELWREEVGGKVEKDVGGMEEEE
ERFVLFPCGVDGAGTHPEQENPVLADSAAAAYTEGGKEGGEEEREGRGRA
GGGSIPLSSMPHGQMNSQPSPTYLRRGLSSSIPSTFSSSLPSSVTPARAF
PSASAASVADDFFSVAVKQEEEGEEGGEEGEVISAGVSAATTMEGGEGWG
RKGGGRGEEGVMMDFGLDMTDTEFQALLSEVEEEGKGEKQERREEEARKG
GRMGAREGGGCGYMDESFYFAYPGPQATAAGAGGEAVPILSQVSTSAEEG
GQYF*
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Synonyms
Publications