NO24G01450.2, NO24G01450.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01450.2
Unique NameNO24G01450.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2414
Alignment locationchr24:387355..389946 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:387355..389946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01450.2 vs.
Match: XP_005854539.1 (tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526]; EKU21821.1 tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 127.1 bits (318), Expect = 3.500e-26
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = 0 
Query:    1 MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVV--REERREEGSDV 105
            MG L+D   A  D+L RQLKIKVGVA+RL KE ASYE EA AQEQKIA MR  G+D YDIKKQEEVLQESYMMIPDSK+RLQAA+E L AF+   R+ +  + SDV
Sbjct:    1 MGPLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDV 106
The following BLAST results are available for this feature:
BLAST of NO24G01450.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854539.13.500e-2667.92tubulin-specific chaperone a [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01450NO24G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01450.2NO24G01450.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01450.2.cds1NO24G01450.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01450.2.cds2NO24G01450.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01450.2 ID=NO24G01450.2|Name=NO24G01450.2|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp
ACTACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTC
GTACTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATC
GATGATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGTCT
TACCAAAGAGGTTGCCTCCTACGAAAATGAAGCCGTAGCTCAAGAACAAA
AGATTGCGGATATGCGTGAACGAGGTCAAGATATCTATGACATTAAGAAG
CAAGAAGAAGTTCTACAGGAGTCATACATGATGATTCCTGATAGCAAGGC
TAGACTGCAGGCAGCAGTGGAGGACTTGGAGGCCTTCGTGGTAAGGGAGG
AAAGGAGGGAGGAAGGGAGTGATGTAGAAACGATCACATACTGTCGCCAT
TTGTAGAAAAACATCAAGATGCTGATATTCATTTCTCTTTCCTCGTCAAC
AAAATTTGTCTCCCCCCGTCTATCTTCTGTTGCATATCTGCAGGCGGAGA
AGCGACATGGAAGGGAGTGGAAACGTCCGTGGGCATTTCAATTGAAACAT
TTAATTGACATGCTCCAGCCTGTTCACGTCTTTCTATCCATATTTCCTGT
TTCCTTTCTCTTTCTTGCAGACGGAGCACCAGGAGGTGAAGGGGTTGCAG
GAGTCAGACATCTTGGCGGAGGCCACCGCGCTCGTCAACCAGGCCACGAC
AGCTGCCACTGCCACCACCACTGGCATTTAAACAATAAGAAGAGGTAAGA
GAAGCTGCCTAGAATACCAGCAATCGAGTAAAGGGAGAACCCACGAGAGG
AAGACAGGGACCAACGGCGGCAACCACCACCGGCAGCTAACAGAAAGAGA
TGGCAGGAGAAGGCAACGGAGGGAAAAGATGACAACATGATGAAGAAACC
ATAAGGGTGTCTTTACACAGAGGCAAGGCGACGAAAAGCATCACCATAAC
AATAAGATCAATGGTAGAAAGGGGGGGGTAATACAAGCAAATCAACGGGA
CAGGAGAGGGAAGACAGAAAACAAGGGAATCACCCAAAACGAATGGCGGA
GCTGTGACAACCGGAGAGCATTTCTCACCACCTTCTCTATCTTCTTTTTT
TCCTCCTTCTCTTTTTGGGAGTGTCACAATTTATGATTGCCGCTTGCTTT
TGTTTTTTTCGCCCATTTATCTGACTGCCTTACATACATTTAAACTACAC
CGTCACTCCCTCCCGTCCTCCCTCCCTCCCTCATTATCTCATTATTGTCA
TGCATGATTCGCCTTCCCTTTCCTCTGAAGGTCATCCCATACATACTCAC
TCTTCCTCCCTCCCTTCTTCTCACTCCTATTCTCTTTCCCCCCGTCCACC
CTCTTCCTCCTCCCCTATCCCAGGAGGCACCACCAATGGCTGGGTGCTAT
CAAGGTAACGGTAGACTAACGCCCCGTGCGCCTTCTCTTCCTTCTTGAAT
TTATTCTTCAGTTGGGCCCTATCCCGTTTCCCATCAAACAACAAGGAAGC
CATGGTGGTGAAGTCCGTCCCGCACTGCCGGAGCGCTTGATAAAATGACC
GGGTTTCGGCCTCTGTCCATCGCGTCGCTTTCGTCCGGGTCGTGAAGGAG
TTGTAGGTAGCCGCCTGCTGGGGATCTTCGATCACTTCCTCCATCCATCC
CTCCTCCCCTGCCTCCTCGGGCCTCGACACGACTTCAAGGGATTTCTGAT
TAATGACGATCTGGCCGTTCACAATCTCTACCTGAGGTCCCACCACCACT
GGTGCTGTCGCGGTGGCGGTGACAGCGGCGGTTACGACAGTGGCAGCGCC
CTCCTCGATGGGAAGAGAAGGAGGGAGGGGGTTGTTGTTCTCCTCCCTAT
CTTTTTCTTCTTCCGTCTCTTGCGTTTCTTCATCTTCTTGTCCCCTCCAC
GGTCTGATATCCTCGCAGCTGTAGTGCTACCTCTTCTCCTCCCTCTTCCT
CTTACCACTACTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCAGCATCGTC
CTCTTCCTCCTTCCCCTCCTCCTTTTCTTCTTCTCCTTCTTTTCCCTCTT
TCTCCTCTCCCGCCTTCTTTTCCTTTTCCTTCTCTTTCTTTTTCAGTCTG
GCTGCCTCTTCCTTTTCCTCGTCCTCCTTTCTCTTCTTTTTCGCAGCCGC
CGCCGCTGCAGATGCTGCTGATGCGCCCAAGCTCAATTTTCGCATTCCAG
GGCACGGTTTTTCTCGCCGTCTGTATTCTTGGAGAAGGCTCCGTAAAGAT
TTATATACCTCTGACTGCTGCTCCTCGTCCTCTTCCTTCCCTTCCTCCTC
ATCCTCTACTGAAGATGATGCTGATTCCCAGGATTCAGAGGAAGACGAAG
AGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGA
GGAGGAGGAAGGAG
back to top

protein sequence of NO24G01450.2

>NO24G01450.2-protein ID=NO24G01450.2-protein|Name=NO24G01450.2|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADM
RERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVVREERREE
GSDVETITYCRHL*
back to top

mRNA from alignment at chr24:387355..389946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01450.2 ID=NO24G01450.2|Name=NO24G01450.2|organism=Nannochloropsis oceanica|type=mRNA|length=2592bp|location=Sequence derived from alignment at chr24:387355..389946+ (Nannochloropsis oceanica)
ACTACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTC
GTACTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATC
GATGATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGGTG
GGTCGACTCGGCAAAAAGTGAAAGCGTGTGGGAGAGGGATGAACAGTGAT
AATGTTGAGCGGCATCTTGTTTGTACAAGGCTTTCCAACTGCCTATGTTC
GTTGTAACCTTTTGAGGCAGAGAGTGAATGCCATAGCAGGAGAAGTCTCA
CCCTCCCTCCCTCCCCCTCCCCTAGTCTTACCAAAGAGGTTGCCTCCTAC
GAAAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATGCGTGAACG
AGGTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCTACAGGAGT
CATACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAGCAGTGGAG
GACTTGGAGGCCTTCGTGGTAAGGGAGGAAAGGAGGGAGGAAGGGAGTGA
TGTAGAAACGATCACATACTGTCGCCATTTGTAGAAAAACATCAAGATGC
TGATATTCATTTCTCTTTCCTCGTCAACAAAATTTGTCTCCCCCCGTCTA
TCTTCTGTTGCATATCTGCAGGCGGAGAAGCGACATGGAAGGGAGTGGAA
ACGTCCGTGGGCATTTCAATTGAAACATTTAATTGACATGCTCCAGCCTG
TTCACGTCTTTCTATCCATATTTCCTGTTTCCTTTCTCTTTCTTGCAGAC
GGAGCACCAGGAGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGAGG
CCACCGCGCTCGTCAACCAGGCCACGACAGCTGCCACTGCCACCACCACT
GGCATTTAAACAATAAGAAGAGGTAAGAGAAGCTGCCTAGAATACCAGCA
ATCGAGTAAAGGGAGAACCCACGAGAGGAAGACAGGGACCAACGGCGGCA
ACCACCACCGGCAGCTAACAGAAAGAGATGGCAGGAGAAGGCAACGGAGG
GAAAAGATGACAACATGATGAAGAAACCATAAGGGTGTCTTTACACAGAG
GCAAGGCGACGAAAAGCATCACCATAACAATAAGATCAATGGTAGAAAGG
GGGGGGTAATACAAGCAAATCAACGGGACAGGAGAGGGAAGACAGAAAAC
AAGGGAATCACCCAAAACGAATGGCGGAGCTGTGACAACCGGAGAGCATT
TCTCACCACCTTCTCTATCTTCTTTTTTTCCTCCTTCTCTTTTTGGGAGT
GTCACAATTTATGATTGCCGCTTGCTTTTGTTTTTTTCGCCCATTTATCT
GACTGCCTTACATACATTTAAACTACACCGTCACTCCCTCCCGTCCTCCC
TCCCTCCCTCATTATCTCATTATTGTCATGCATGATTCGCCTTCCCTTTC
CTCTGAAGGTCATCCCATACATACTCACTCTTCCTCCCTCCCTTCTTCTC
ACTCCTATTCTCTTTCCCCCCGTCCACCCTCTTCCTCCTCCCCTATCCCA
GGAGGCACCACCAATGGCTGGGTGCTATCAAGGTAACGGTAGACTAACGC
CCCGTGCGCCTTCTCTTCCTTCTTGAATTTATTCTTCAGTTGGGCCCTAT
CCCGTTTCCCATCAAACAACAAGGAAGCCATGGTGGTGAAGTCCGTCCCG
CACTGCCGGAGCGCTTGATAAAATGACCGGGTTTCGGCCTCTGTCCATCG
CGTCGCTTTCGTCCGGGTCGTGAAGGAGTTGTAGGTAGCCGCCTGCTGGG
GATCTTCGATCACTTCCTCCATCCATCCCTCCTCCCCTGCCTCCTCGGGC
CTCGACACGACTTCAAGGGATTTCTGATTAATGACGATCTGGCCGTTCAC
AATCTCTACCTGAGGTCCCACCACCACTGGTGCTGTCGCGGTGGCGGTGA
CAGCGGCGGTTACGACAGTGGCAGCGCCCTCCTCGATGGGAAGAGAAGGA
GGGAGGGGGTTGTTGTTCTCCTCCCTATCTTTTTCTTCTTCCGTCTCTTG
CGTTTCTTCATCTTCTTGTCCCCTCCACGGTCTGATATCCTCGCAGCTGT
AGTGCTACCTCTTCTCCTCCCTCTTCCTCTTACCACTACTGCTGCTGCGG
CGGCGGCGGCGGCGGCGGCAGCATCGTCCTCTTCCTCCTTCCCCTCCTCC
TTTTCTTCTTCTCCTTCTTTTCCCTCTTTCTCCTCTCCCGCCTTCTTTTC
CTTTTCCTTCTCTTTCTTTTTCAGTCTGGCTGCCTCTTCCTTTTCCTCGT
CCTCCTTTCTCTTCTTTTTCGCAGCCGCCGCCGCTGCAGATGCTGCTGAT
GCGCCCAAGCTCAATTTTCGCATTCCAGGGCACGGTTTTTCTCGCCGTCT
GTATTCTTGGAGAAGGCTCCGTAAAGATTTATATACCTCTGACTGCTGCT
CCTCGTCCTCTTCCTTCCCTTCCTCCTCATCCTCTACTGAAGATGATGCT
GATTCCCAGGATTCAGAGGAAGACGAAGAGGAGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGGAGGAGGAGGAGGAAGGAG
back to top

Coding sequence (CDS) from alignment at chr24:387355..389946+

>NO24G01450.2 ID=NO24G01450.2|Name=NO24G01450.2|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at chr24:387355..389946+ (Nannochloropsis oceanica)
ATGGGACGTTTGTCAGACAATGGACCCGCGACGATCGATGATCTTGCCCG
CCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGTCTTACCAAAGAGGTTG
CCTCCTACGAAAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATG
CGTGAACGAGGTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCT
ACAGGAGTCATACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAG
CAGTGGAGGACTTGGAGGCCTTCGTGGTAAGGGAGGAAAGGAGGGAGGAA
GGGAGTGATGTAGAAACGATCACATACTGTCGCCATTTGTAG
back to top
Synonyms
Publications