NO24G01410, NO24G01410 (gene) Nannochloropsis oceanica

Overview
NameNO24G01410
Unique NameNO24G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2607
Alignment locationchr24:377674..380280 +

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Properties
Property NameValue
DescriptionEGF-like region, conserved site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:377674..380280 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000742EG-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G01410 vs. NCBI_GenBank
Match: EWM24334.1 (EGF-like region, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 1.500e-100
Identity = 252/684 (36.84%), Postives = 329/684 (48.10%), Query Frame = 0 
Query:    3 LSPSSTSRKVRQWSRSRMTLSYF-----------SLLSVLSTLACAYSPMDGSSQVCRVVHLDETSLPFPATAAAPAAAEDQQWSIGITGTLPGITLSDNVDLNPLLENGNSDPGTGLSPFGPHASIRFDVWIPPSSHNSNNHDYTGPLCVPSSLTLIAGPGSLTVPIPSPQHDRWTAGKWHSINAPINTSSDGTYLKNEERATWNALTRLELNYHCVGNTTKXXXXXXXXXXXXXXXXXXXXXXCSSIKIQLIRVCKGLSFSSFCTVTTTAIYKTECRECRCQTCHKEDCKCLTTYPGTCPFDNCSDCPCAPIXXXXXXXXXXXXXXXXXXXXSRSFTSCTRAITFEVASLAPAGGVERGGAHVILTSTSSFVATAEMACRFGPERNNGREGGVIVPATLLSSRTLACVAPPYNATVMTDING-XXXXXXXXXXXXXXXXXXEVSLNGQQWTRSGRTFHYCXXXXXXXXXXXXXXXXXXXXXXXXXXXCLAAHDSCLPGWTGKNCTLKCPGNANNPCNGEGFCLAVGTGEEGM--DEEEASCVCKPGFEGVACDVGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMGACLLLLTLAAVAVYVKRVEVLEFIFWTLAASRFERLQHGQE------QGDSLGEVEEGRQSVELTAASSSLQQL 667
            LS S+    + +  RS+ T  YF            +L  +S+   AY   DGSS VCR++HLDET  P  A  A PA             TLP +TLSD ++L PLLE    D  TGL  FGPHA++RFD WI  SS        T   C PSSL L A  GS+ V IP PQ   W   KW +++AP+       +    +   WNAL+R+EL+Y C  N                          + +KIQL+R+CK +   S CT+T+T  YKTECREC CQ CHKEDC CL +  G CP+  C  CPC+P+        XXXXXXXXX   +RSFTSC+ A+T+ V  L P  G    G HVIL++++ FVAT EMACRFG ER      G +VPATL+S+R+L C  P      +  + G                   E +L+G  WTRS  T+H+C                           CL AH +C PGWTG+ C ++CPG A N C+  G C     G  GM  ++EEA C+C  G++G+ACDV +                                                 G GAC LL+ +  V V VK+ +V E++FW LAASRF R + GQE      +G+ +    EG   VELT + S +  L
Sbjct:   13 LSTSNAESSLEEPMRSKYTRKYFLGAGALGRLYLVILPAVSSFIHAYHSADGSSHVCRMIHLDETRFPVLAPEAEPAK----------NRTLPSVTLSDTINLIPLLER---DAETGLVSFGPHATLRFDAWISSSS--------TSEPCTPSSLVLKATSGSVKVRIPIPQASGWATDKWLTVDAPL----PARHAIYNDYEIWNALSRVELDYEC--NNPGSSAFDTAIRAPTPAETMLSTLNENLMKIQLLRICKAVPGPSVCTITSTYEYKTECRECNCQICHKEDCGCLPSSTGHCPYGTCDACPCSPLCRCCYDSAXXXXXXXXXCCETRSFTSCSTAVTYGVDRLTPPAGTAEEGTHVILSASTPFVATPEMACRFGDERT-----GTVVPATLISARSLMCAVP-----ALLGVQGRDDREDGDGGDALGRSVEVEATLDGINWTRSNLTYHFC------------------PPHEDLLDACLTAHGNCGPGWTGRRCDIECPGGAENACHRRGVCTPRSEGVSGMAGEKEEAVCLCSRGYQGLACDVKI-----QTAFEGNLPPTTSIQSLQGASSLESGTPDTYSHQTSARRRGVLLGAGACFLLIVIVGVGVCVKKTDVAEYVFWRLAASRFRRSRTGQEEEAFLCEGEKVSARVEGGSQVELTPSGSLVPYL 636
The following BLAST results are available for this feature:
BLAST of NO24G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24334.11.500e-10036.84EGF-like region, conserved site [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002853NSK002853Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01410.1NO24G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598471gene_7365Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100105g15gene6130Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01410.1NO24G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01410 ID=NO24G01410|Name=NO24G01410|organism=Nannochloropsis oceanica|type=gene|length=2607bp
GGAAAATAAAATAGGTGTCTTTGATTTTACATAAAACGCTAAAAAATTCT
TCCTGTGCTTTCCTCTTGCTCACATAGGCTTGGATGTAGAAGCATACGTT
CCCTCATCTTGATAGATGAGCGCGTTGACGCGAACTTGCGTCGCTTTTCT
TGGCTGTCCTCAAACCAACTCATAACACGATCTCCGTCCATCAAGATGTA
TCATTATACAACTTGATACGCTTTTAATTTTGACACCACACCTTATATGC
ACATGCACCACCATACAGTCAAGCAAAAGGCGCCTACCGTACGTTACGTG
GCCCATCGTCTGTTGCTTTATTTGTTCTGCCTCCGCGTCTGCGTCTCCTA
ATCCCGATCAGCCTCACCACCACAACCCCGTCATGACACTATCACCATCC
TCTACCTCGCGAAAAGTTAGACAATGGTCCCGGTCTCGAATGACGCTCTC
CTATTTCTCCCTCCTGTCGGTGCTGTCTACCCTCGCTTGTGCCTACAGCC
CTATGGATGGGAGCAGCCAAGTCTGTCGTGTGGTCCACCTCGACGAGACG
AGTCTCCCCTTTCCTGCTACTGCTGCTGCTCCTGCTGCTGCAGAGGATCA
ACAATGGTCCATAGGCATTACAGGTACCTTGCCCGGCATTACCCTGTCGG
ATAATGTGGATCTCAACCCCTTGCTCGAAAACGGCAACAGCGACCCAGGT
ACAGGCCTTTCTCCTTTTGGTCCGCACGCCAGCATCCGTTTTGATGTTTG
GATTCCTCCATCATCACACAATAGTAATAACCATGATTACACTGGGCCGC
TGTGTGTGCCCTCTTCCTTGACTTTGATCGCTGGGCCGGGCAGCTTGACC
GTCCCTATTCCCTCCCCGCAACACGATCGGTGGACAGCGGGGAAATGGCA
CTCAATCAACGCACCTATTAATACTTCGAGTGACGGAACATATCTGAAGA
ATGAAGAGCGGGCTACCTGGAATGCACTGACCCGCTTGGAGCTGAATTAT
CACTGCGTCGGTAATACCACGAAGACGAGTAGTAGCAGCAGCACCACCAA
CAGCATCAGCACAGGCAGCAGCAGCACCAACAACAGTCGCTGCAGCAGTA
TCAAAATTCAGCTCATCCGGGTGTGCAAGGGCTTATCCTTTTCCTCCTTC
TGCACCGTCACCACCACCGCCATCTATAAAACGGAATGCAGGGAATGCCG
TTGCCAGACCTGCCACAAAGAGGACTGTAAGTGTCTCACCACCTACCCGG
GCACCTGTCCTTTCGACAATTGTAGCGATTGTCCCTGTGCTCCCATCTGT
CAGTGCTGCTACGAATCAAAATGTGACTACCCCTGTAATTGCGAAACGTG
CTGCGAATCCCGTTCGTTTACATCGTGTACCAGAGCAATTACGTTTGAGG
TGGCGTCGTTGGCGCCGGCGGGAGGAGTGGAGAGAGGAGGGGCACATGTT
ATTCTTACATCCACGAGCTCATTTGTGGCTACTGCTGAGATGGCTTGTCG
GTTTGGTCCTGAAAGAAACAATGGGAGGGAGGGAGGGGTGATTGTGCCGG
CGACGCTCTTATCGTCGAGGACGTTGGCGTGTGTTGCCCCTCCCTATAAT
GCAACGGTGATGACGGACATTAACGGCAGCAGCAGCAGCAGCAATAGCAG
CAGCAGCAACAGAGGGAAGAGCGTAGTGGTAGAAGTAAGTCTGAACGGGC
AGCAGTGGACACGCTCAGGACGCACCTTCCACTATTGTCCATCTTCCTCC
TCATCTTCTTTGAGAAAAGGAGACGAGGAGGAGGAGGAGGAGATCGACGA
CGAAAGAGAGAACGAAGAGTGCCTCGCTGCCCATGATAGTTGTCTACCTG
GATGGACGGGCAAAAACTGCACGTTGAAATGCCCCGGTAATGCGAATAAC
CCATGTAATGGAGAAGGATTCTGTCTGGCTGTTGGTACAGGAGAAGAAGG
GATGGATGAAGAGGAGGCGTCGTGTGTATGTAAGCCTGGATTTGAGGGCG
TGGCGTGCGATGTCGGGGTGATAGTGGCCAGTAGTACCACTGAAAGCAGC
AACAACAGCACCAGCAGTACATCATTATCGAAGACCGTCGCTTCTTCCTC
TATCTCCTCGGAGCCAGGCAGCAGCAGCAGCACAGATTCTTCTGCCATGC
GACAGGGGTTATTGCTGGGCATGGGGGCGTGCCTTCTCCTCCTAACCCTC
GCTGCAGTCGCTGTGTACGTAAAGCGAGTAGAAGTTCTGGAATTTATCTT
TTGGACGTTGGCAGCCTCGCGTTTTGAGCGGTTACAGCATGGGCAGGAAC
AGGGTGATAGCCTAGGAGAGGTTGAGGAAGGACGGCAGTCGGTGGAGCTG
ACTGCGGCGTCGAGTTCACTGCAGCAGTTGGAGAACGAGGAAGTAGGAGA
AGTGACTGTTATGTGATTTTGAAAGCGAAAATGAAAGAAACAAGAGCATG
CGTCCGATGACCTGAGCGTGGTGTGTTTGACGCAGTAAGCATGGGAGGGG
TATGGGAATAGGGATATCAGAAGTGAAAAACGATGTTACGATCTCAAAAT
CGCAAGCTTACCACAAATTGTGGCGTTGAGATGCGTCCCACGGCCCCGAT
TATTCAT
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protein sequence of NO24G01410.1

>NO24G01410.1-protein ID=NO24G01410.1-protein|Name=NO24G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=678bp
MTLSPSSTSRKVRQWSRSRMTLSYFSLLSVLSTLACAYSPMDGSSQVCRV
VHLDETSLPFPATAAAPAAAEDQQWSIGITGTLPGITLSDNVDLNPLLEN
GNSDPGTGLSPFGPHASIRFDVWIPPSSHNSNNHDYTGPLCVPSSLTLIA
GPGSLTVPIPSPQHDRWTAGKWHSINAPINTSSDGTYLKNEERATWNALT
RLELNYHCVGNTTKTSSSSSTTNSISTGSSSTNNSRCSSIKIQLIRVCKG
LSFSSFCTVTTTAIYKTECRECRCQTCHKEDCKCLTTYPGTCPFDNCSDC
PCAPICQCCYESKCDYPCNCETCCESRSFTSCTRAITFEVASLAPAGGVE
RGGAHVILTSTSSFVATAEMACRFGPERNNGREGGVIVPATLLSSRTLAC
VAPPYNATVMTDINGSSSSSNSSSSNRGKSVVVEVSLNGQQWTRSGRTFH
YCPSSSSSSLRKGDEEEEEEIDDERENEECLAAHDSCLPGWTGKNCTLKC
PGNANNPCNGEGFCLAVGTGEEGMDEEEASCVCKPGFEGVACDVGVIVAS
STTESSNNSTSSTSLSKTVASSSISSEPGSSSSTDSSAMRQGLLLGMGAC
LLLLTLAAVAVYVKRVEVLEFIFWTLAASRFERLQHGQEQGDSLGEVEEG
RQSVELTAASSSLQQLENEEVGEVTVM*
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Synonyms
Publications