NO24G01400, NO24G01400 (gene) Nannochloropsis oceanica

Overview
NameNO24G01400
Unique NameNO24G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1633
Alignment locationchr24:375948..377580 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:375948..377580 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G01400 vs. NCBI_GenBank
Match: XP_005855587.1 (hypothetical protein NGA_0624100 [Nannochloropsis gaditana CCMP526] >EKU20779.1 hypothetical protein NGA_0624100 [Nannochloropsis gaditana CCMP526] >EWM24336.1 hypothetical protein Naga_100105g14 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 5.100e-24
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:    2 SKICGVKRRCLLYGIGAALVPAIVIASLVGVYYPRAPEITANETTINTFKFNGVESVSVDADINLEIVNSNKHYPIAFDTVELEFYLPASPDKPLGFGQLDGG 105
            SK+CGV RRCL+ GI + L+P IVIASLVGVYYP+APEI A  T IN+ K NG+ESVS              +YPIAFD VEL+FY P+SP+  +G G L+GG
Sbjct:    8 SKLCGVTRRCLIIGIASVLLPVIVIASLVGVYYPKAPEIRATTTEINSLKINGMESVSXXXXXXXXXXXXXXNYPIAFDPVELDFYFPSSPESRVGTGVLEGG 110
The following BLAST results are available for this feature:
BLAST of NO24G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855587.15.100e-2457.28hypothetical protein NGA_0624100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002854NSK002854Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01400.1NO24G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598469gene_7364Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100105g14gene6131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01400.1NO24G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01400 ID=NO24G01400|Name=NO24G01400|organism=Nannochloropsis oceanica|type=gene|length=1633bp
AGCTGCAGCACTTTCTTTTTCATTCAAACATTCGAAAACGTGCACGCCGT
TAATTTGATTCAACGTAAAATTCTCTCAACGGCCTTTCTTGCTTCCGTCC
GTCTGTCTCGTTTCGTTGCCTATTGATAAGAGGGACATATGCATCCCGGC
ACGCGATCTTTGCATCTTGCACGTATGCGAGTTGTCCCTGTTTTGTCATG
GACGGGGTGGGGTGTTCAAGTGCTGCCTGAATGCGACGTATCCTCAAACA
TCCGAGGAACAAGCTACACCTTACAAAGTAAAGTAGACTATCCCTCTCAT
GGAAGAAGACGAGTAAAACGACAAGGCACACCATCAGCTTCTCTACAACT
GTGCAAAATTATTCATCTCTCAAGCCCATTGACAACTAATTGACATGCAA
ATTATAAACTTCACAGACGACAAGAAAAGCAAGGGTCCTCCCAAGATCAG
CAAGCAAGCACTCGAGGAAGCACTCAACTATGAGCAAAATCTGTGGTGTC
AAACGACGTTGCCTCTTGTATGGCATTGGTGCGGCACTAGTGCCCGCCAT
TGTGATTGCATCTTTAGTAGGGGTCTATTACCCCAGGGgtgagtgaggga
gcggagggagagggagagagaactggagagtcgtagaggggcgacggaaa
gggttcatacatgtaaggctgctgtcgcggtcaatcaatcctagtataga
gacaattacaggtatttacagagtaaatcacatctcgtttatcattgttc
tccccctacccctctcttgcacctaaccgcacagCCCCCGAAATCACTGC
GAACGAAACCACCATTAACACCTTCAAGTTCAACGGAGTGGAATCTGTTA
GCGTAGACGCTGACATAAACCTTGAAATCGTCAACAGCAACAAGCACTAT
CCCATTGCGTTTGATACTGTGGAGCTTGAATTCTACCTCCCCGCTAGTCC
CGACAAGCCTCTTGGGTTTGGACAACTAGACGGGGGGTGATACCAGCCGG
GGCGACGACGACAAGGAATTTACATACTGATTTCGAAGCATCATTGAATC
TGCTTGgttcgtatgcagaggagtgagaggaaaaggaagagagaaatgga
aaaaaggacgtggtgctggtggtgacagtgagagacgggcatccacccac
atcattctcatcttccgttcttctcctcccgtccaaccaaataaacagGC
AACAGCTTCATGAGTGATATAAAGAAAGGATCCTCCGGACTTATTGTCAA
AGGCAACGTGCTAGGATACTCCACCATTTTAAAAAGTGATTTCCGATTGT
CCTCCGAGTTTGAATGCGACCTTAGTTATACATGGAATGATCGCACAACC
CACAAGGACTGCCAAAGCACCAAAAAAGTGATTCTATTGAGGTCAAAGTA
AGATTCCTACGAGAGTCATTACACATGGAAGGAGAGAAAGGGATAGTCTC
GTAATTTGATTAGAAATAGGTAAGAGAAGCTGTGTGTGTGTTATGGCAGT
GAACGATGTGACTCTCATGAAATGGATGACCACCCGTGACAAGAAATCAG
TGCATGTTGGTCAACAAGGTAGTCAACAAAAAACTTAATATTTTCGCGAA
AACCTAGCGACAAAAAATAATTTATCGCATGTT
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protein sequence of NO24G01400.1

>NO24G01400.1-protein ID=NO24G01400.1-protein|Name=NO24G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MSKICGVKRRCLLYGIGAALVPAIVIASLVGVYYPRAPEITANETTINTF
KFNGVESVSVDADINLEIVNSNKHYPIAFDTVELEFYLPASPDKPLGFGQ
LDGG*
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Synonyms
Publications